Contacts of the helix formed by residues 150 - 176 (chain A) in PDB entry 2FJC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 150 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A ILE* 6.0 1.9 - - - +
35A ILE* 3.8 13.0 - - + +
89A ARG* 2.9 27.0 + - - -
93A LEU* 4.1 12.8 - - - +
145A ALA* 2.8 20.5 + - + +
148A SER* 3.3 12.2 - - - +
149A GLY* 1.3 71.9 - - - +
151A ALA* 1.3 60.2 + - - +
152A VAL 3.6 1.0 + - - -
153A THR* 2.6 30.5 + - - +
154A ASP* 3.0 19.3 + - - +
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Residues in contact with ALA 151 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A GLY 2.8 10.0 + - - +
150A ASP* 1.3 72.0 - - - +
152A VAL* 1.3 57.6 + - - +
154A ASP* 3.1 9.2 - - - +
155A GLY 2.9 24.9 + - - -
142H GLN* 3.5 39.5 - - + +
158H THR* 3.5 24.9 - - + +
161H LEU* 4.9 6.1 - - + -
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Residues in contact with VAL 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A ARG* 3.5 35.9 - - - +
92A GLN* 4.7 2.7 - - - +
150A ASP* 3.3 0.8 + - - -
151A ALA* 1.3 76.1 - - - +
153A THR* 1.3 63.6 + - - +
155A GLY* 3.2 2.6 + - - -
156A ILE* 3.0 35.9 + - + +
158H THR* 4.2 7.4 - - + +
161H LEU* 3.7 45.3 - - + +
162H ARG* 3.7 20.7 + - + +
165H GLY* 6.1 0.9 - - - -
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Residues in contact with THR 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A ILE* 4.0 21.3 - - + -
39A LEU* 4.3 9.4 - - + -
89A ARG* 2.8 28.0 + - + +
93A LEU* 4.1 2.9 - - - +
141A THR* 4.4 2.9 - - + -
145A ALA* 4.0 9.9 - - + -
150A ASP* 2.6 31.9 + - - -
152A VAL* 1.3 75.0 - - - +
154A ASP* 1.3 64.3 + - - +
156A ILE* 3.2 5.3 + - - -
157A ILE* 2.9 48.7 + - + +
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Residues in contact with ASP 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A GLN* 2.9 30.4 - - - +
145A ALA* 3.7 11.4 - - + +
146A ALA* 3.5 21.7 - - - +
150A ASP 3.0 13.8 + - - +
151A ALA* 3.1 14.8 - - - +
153A THR* 1.3 78.3 - - - +
155A GLY* 1.3 55.6 + - - +
157A ILE* 3.8 3.6 - - - +
158A THR* 2.8 44.5 + - - -
151K ALA* 5.1 0.3 - - - +
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Residues in contact with GLY 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151A ALA 2.9 14.3 + - - -
152A VAL 3.2 2.0 + - - -
154A ASP* 1.3 77.3 - - - +
156A ILE* 1.3 62.3 + - - +
158A THR* 3.8 5.6 - - - -
159A ASP* 3.0 31.3 + - - +
158H THR* 5.0 6.3 - - - -
162H ARG* 3.3 16.2 - - - -
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Residues in contact with ILE 156 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A THR* 4.1 27.6 - - - +
86A ILE* 4.4 7.9 - - + -
89A ARG* 3.9 36.3 - - + -
92A GLN* 5.5 2.5 - - - +
152A VAL* 3.0 27.5 + - + +
153A THR* 3.6 4.7 - - - +
155A GLY* 1.3 77.7 - - - +
157A ILE* 1.3 72.3 + - + +
159A ASP* 3.3 3.5 + - - +
160A ILE* 3.3 28.0 + - + +
162H ARG* 3.5 32.3 - - + +
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Residues in contact with ILE 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A LEU* 4.2 10.5 - - + -
42A HIS* 4.9 0.7 - - + -
86A ILE* 4.8 7.4 - - + -
89A ARG* 6.0 0.7 - - + -
138A PHE* 3.3 44.6 - - + +
141A THR* 4.0 19.5 - - + -
142A GLN* 3.8 11.2 - - + -
153A THR* 2.9 40.4 + - + +
154A ASP 4.0 2.2 - - - +
156A ILE* 1.3 87.5 - - + +
158A THR* 1.3 52.8 + - - +
160A ILE* 3.1 9.9 + - - +
161A LEU* 2.7 46.2 + - + +
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Residues in contact with THR 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A GLN* 3.9 3.3 - - - +
154A ASP* 2.8 37.6 + - - -
155A GLY* 3.8 6.1 - - - -
157A ILE* 1.3 77.7 - - - +
159A ASP* 1.3 60.1 + - - +
161A LEU* 3.2 10.0 + - - +
162A ARG* 2.8 31.9 + - + +
151K ALA* 3.5 44.4 - - + +
152K VAL* 4.1 6.0 - - + +
155K GLY* 5.0 8.5 - - - -
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Residues in contact with ASP 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155A GLY* 3.0 17.5 + - - +
156A ILE* 3.6 5.8 - - - +
158A THR* 1.3 77.5 - - - +
160A ILE* 1.3 64.4 + - + +
162A ARG* 3.2 30.6 + - - +
163A THR* 3.3 19.4 + - - +
162H ARG* 3.2 31.1 + - - +
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Residues in contact with ILE 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A ALA* 3.7 30.1 - - + -
85A THR* 4.3 3.4 - - - +
86A ILE* 3.6 36.6 - - + -
138A PHE* 3.8 31.9 - - + -
156A ILE* 3.4 21.5 - - + +
157A ILE* 3.1 9.1 + - - +
159A ASP* 1.3 75.1 - - + +
161A LEU* 1.3 67.2 + - - +
163A THR* 3.0 12.9 + - - +
164A LEU* 2.9 27.5 + - + +
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Residues in contact with LEU 161 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A SER* 3.6 31.1 + - - +
138A PHE* 3.3 29.2 - - + -
139A SER* 4.0 16.4 - - - +
142A GLN* 4.0 19.7 - - + -
157A ILE* 2.7 33.6 + - + +
158A THR* 3.2 12.8 + - - +
160A ILE* 1.3 74.0 - - - +
162A ARG* 1.3 56.3 + - - +
164A LEU* 3.6 4.6 - - + +
165A GLY* 2.9 26.9 + - - -
151K ALA* 4.9 5.6 - - + -
152K VAL* 3.7 18.9 - - + +
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Residues in contact with ARG 162 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158A THR* 2.8 16.4 + - - +
159A ASP* 3.4 24.8 + - - +
160A ILE 3.1 0.2 - - - -
161A LEU* 1.3 76.8 - - - +
163A THR* 1.3 64.0 + - + +
165A GLY* 3.3 2.4 + - - -
166A LYS* 3.2 22.5 + - + +
92K GLN* 5.1 3.3 + - - +
152K VAL* 3.8 26.2 + - + +
155K GLY* 3.2 26.7 + - - -
156K ILE* 3.9 30.5 - - + +
159K ASP* 3.0 28.9 + - - +
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Residues in contact with THR 163 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A SER* 4.5 14.3 + - - +
159A ASP 3.4 13.9 - - - +
160A ILE* 3.0 15.4 + - - +
162A ARG* 1.3 78.6 - - + +
164A LEU* 1.3 66.6 + - - +
166A LYS* 3.4 6.1 + - - +
167A ALA* 3.1 23.6 + - - +
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Residues in contact with LEU 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A PHE* 3.8 45.8 - - + +
134A LEU* 4.0 7.6 - - + -
135A SER* 3.9 22.7 - - - +
138A PHE* 3.5 37.7 - - + -
160A ILE* 2.9 22.4 + - + +
161A LEU* 3.6 8.1 - - + +
163A THR* 1.3 80.4 + - - +
165A GLY* 1.3 57.8 + - - +
167A ALA* 3.2 4.2 + - + +
168A ILE* 2.8 42.5 + - + +
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Residues in contact with GLY 165 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A SER* 5.7 1.5 + - - -
161A LEU 2.9 16.5 + - - -
162A ARG* 3.3 2.7 + - - -
164A LEU* 1.3 77.8 - - - +
166A LYS* 1.3 61.2 + - - +
168A ILE* 3.5 9.1 + - - +
169A TRP* 3.0 24.4 + - - +
89K ARG* 5.1 4.0 - - - -
92K GLN* 3.9 17.9 - - - +
152K VAL* 6.0 0.7 - - - -
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Residues in contact with LYS 166 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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162A ARG* 3.2 12.8 + - + +
163A THR* 3.8 9.4 - - - +
164A LEU 3.2 0.2 - - - -
165A GLY* 1.3 78.5 - - - +
167A ALA* 1.3 56.9 + - - +
169A TRP* 3.4 19.2 + - + +
170A MET* 3.0 54.2 + - + +
69J HIS* 4.8 3.8 + - - -
88K GLU* 3.0 34.2 + - - +
92K GLN* 3.7 18.0 + - - +
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Residues in contact with ALA 167 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75A TYR* 4.0 20.4 + - + -
131A PHE* 3.8 26.0 - - + -
163A THR 3.1 17.4 + - - +
164A LEU* 3.2 5.1 + - + +
166A LYS* 1.3 74.9 - - - +
168A ILE* 1.3 59.8 + - - +
170A MET* 3.3 9.0 + - - +
171A LEU* 2.8 36.8 + - - +
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Residues in contact with ILE 168 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A LYS* 3.8 10.4 - - + +
131A PHE* 3.6 44.4 - - + +
132A GLU* 3.8 33.9 - - + +
135A SER* 4.0 15.0 - - - +
164A LEU 2.8 28.0 + - - +
165A GLY* 3.8 7.0 - - - +
167A ALA* 1.3 71.7 - - - +
169A TRP* 1.3 60.6 + - - +
171A LEU* 3.4 7.4 + - - +
172A GLY* 2.9 26.3 + - - -
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Residues in contact with TRP 169 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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165A GLY 3.0 18.3 + - - +
166A LYS* 3.8 28.3 - - + -
168A ILE* 1.3 79.8 - - - +
170A MET* 1.3 88.2 + - + +
172A GLY* 3.2 2.5 + - - -
173A ALA* 3.0 24.9 + - + +
58J TRP 4.1 8.3 + - - -
65J PHE* 3.7 19.3 - + - -
69J HIS* 3.6 28.0 - + - -
88K GLU* 4.2 9.9 - - + -
91K LEU* 3.4 54.7 + - + +
92K GLN* 3.7 24.0 - - + -
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Residues in contact with MET 170 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A TYR* 5.2 4.3 - - - +
166A LYS* 3.0 56.6 + - + +
167A ALA* 3.8 7.6 - - - +
169A TRP* 1.3 95.0 - - + +
171A LEU* 1.3 56.9 + - - +
173A ALA* 3.1 3.8 + - - +
174A THR* 2.7 37.8 + - + +
65J PHE* 3.8 24.9 - - + -
66J LYS* 5.1 21.8 - - + -
69J HIS* 4.6 11.7 - - + -
70J GLU* 6.1 0.2 - - - +
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Residues in contact with LEU 171 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A LEU* 4.5 5.8 - - + -
75A TYR* 3.5 20.0 - - + +
124A LEU* 4.0 39.0 - - + -
127A VAL* 3.3 27.4 - - + -
128A LYS* 3.6 29.6 - - + -
131A PHE* 3.8 15.7 - - + -
167A ALA 2.8 20.1 + - - +
168A ILE* 3.7 3.6 - - - +
170A MET* 1.3 75.4 - - - +
172A GLY* 1.3 63.7 + - - +
174A THR* 3.2 5.9 + - + +
175A LEU* 2.9 29.9 + - + +
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Residues in contact with GLY 172 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A LYS* 3.5 23.8 - - - +
168A ILE 2.9 12.4 + - - -
169A TRP* 3.6 4.0 - - - -
170A MET 3.2 0.2 - - - -
171A LEU* 1.3 77.7 - - - +
173A ALA* 1.3 55.4 + - - +
175A LEU* 3.8 2.3 - - - +
176A LYS* 2.9 31.4 + - - +
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Residues in contact with ALA 173 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169A TRP* 3.0 21.2 + - - +
170A MET* 3.1 8.7 + - - +
172A GLY* 1.3 77.7 - - - +
174A THR* 1.3 59.0 + - - +
175A LEU 3.6 0.2 + - - -
176A LYS* 3.7 8.1 + - - -
60J ILE 4.5 4.7 - - - +
61J TYR* 3.4 8.9 - - + +
62J GLY 2.9 23.8 + - - -
65J PHE* 3.6 34.8 - - + -
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Residues in contact with THR 174 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124A LEU* 3.8 23.7 - - + +
170A MET* 2.7 32.3 + - + +
171A LEU* 3.7 10.2 + - + +
173A ALA* 1.3 75.3 - - - +
175A LEU* 1.3 62.4 + - - +
176A LYS 3.4 0.6 - - - +
62J GLY* 2.9 14.6 - - - -
63J ILE* 3.1 41.7 + - - +
65J PHE* 3.6 18.2 - - + -
66J LYS* 4.5 8.3 - - + +
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Residues in contact with LEU 175 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A VAL* 3.7 41.3 - - + +
124A LEU* 3.8 16.8 - - + +
125A ALA* 3.5 35.2 - - + +
128A LYS* 4.2 15.3 - - + -
171A LEU* 2.9 21.6 + - + +
172A GLY* 4.1 3.6 - - - +
174A THR* 1.3 84.2 - - - +
176A LYS* 1.3 63.8 + - - +
177A ALA* 3.4 5.4 + - - +
63J ILE* 5.9 0.2 - - + -
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Residues in contact with LYS 176 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172A GLY 2.9 17.8 + - - +
173A ALA* 3.8 10.3 - - - +
174A THR 3.4 1.3 - - - +
175A LEU* 1.3 78.9 - - - +
177A ALA* 1.3 68.2 + - - +
59J HIS 5.6 0.2 + - - -
61J TYR* 3.6 44.1 - - + +
62J GLY* 4.1 10.7 - - - -
63J ILE 5.2 0.2 + - - -
117J GLU* 2.8 46.6 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il