Contacts of the helix formed by residues 150 - 176 (chain F) in PDB entry 2FJC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 150 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32F ILE* 6.0 1.4 - - - +
35F ILE* 3.8 12.6 - - + +
89F ARG* 2.8 26.9 + - - -
93F LEU* 4.0 13.3 - - - +
145F ALA* 2.8 20.3 + - - +
148F SER* 3.3 12.3 + - - +
149F GLY* 1.3 72.4 - - - +
151F ALA* 1.3 61.7 + - - +
152F VAL* 3.6 1.2 + - - +
153F THR* 2.6 30.0 + - - -
154F ASP* 3.0 19.1 + - - +
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Residues in contact with ALA 151 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149F GLY 2.8 9.8 + - - +
150F ASP* 1.3 70.9 + - - +
152F VAL* 1.3 57.9 + - - +
154F ASP* 3.1 9.1 - - - +
155F GLY 2.9 25.3 + - - -
142J GLN* 3.5 33.4 - - + +
158J THR* 3.4 33.3 - - + +
161J LEU* 4.6 7.9 - - + -
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Residues in contact with VAL 152 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89F ARG* 3.4 37.9 - - - +
92F GLN* 4.6 2.9 - - - +
150F ASP* 3.3 0.8 + - - -
151F ALA* 1.3 76.5 - - - +
153F THR* 1.3 63.9 + - - +
155F GLY* 3.2 1.9 + - - -
156F ILE* 2.9 35.8 + - + +
158J THR* 4.2 6.5 - - - +
161J LEU* 3.5 47.3 - - + +
162J ARG* 3.5 21.6 + - + +
165J GLY* 5.8 0.7 - - - -
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Residues in contact with THR 153 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35F ILE* 4.0 18.4 - - + -
39F LEU* 4.2 9.2 - - + -
89F ARG* 2.8 27.5 + - + +
93F LEU* 4.0 4.0 - - - +
141F THR* 4.3 3.1 - - + -
145F ALA* 4.0 12.6 - - + -
150F ASP* 2.6 34.0 + - - -
152F VAL* 1.3 75.8 - - - +
154F ASP* 1.3 62.7 + - - +
156F ILE* 3.2 5.3 + - - -
157F ILE* 2.9 42.8 + - + +
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Residues in contact with ASP 154 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142F GLN* 2.8 31.0 - - - +
145F ALA* 3.7 11.6 - - + +
146F ALA* 3.6 20.1 - - - +
150F ASP 3.0 14.8 + - - +
151F ALA* 3.1 14.9 - - - +
153F THR* 1.3 77.5 - - - +
155F GLY* 1.3 55.8 + - - +
157F ILE* 3.9 3.5 - - - +
158F THR* 2.7 43.8 + - - -
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Residues in contact with GLY 155 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151F ALA 2.9 14.2 + - - -
152F VAL 3.2 2.2 + - - -
154F ASP* 1.3 76.5 - - - +
156F ILE* 1.3 62.6 + - - +
158F THR* 3.4 5.3 + - - -
159F ASP* 3.0 30.4 + - - +
158J THR* 4.8 6.5 - - - -
162J ARG* 3.1 17.7 - - - -
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Residues in contact with ILE 156 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85F THR* 4.1 28.5 - - - +
86F ILE* 4.4 7.4 - - + -
89F ARG* 3.8 37.0 - - + -
92F GLN* 5.4 2.5 - - - +
152F VAL* 2.9 27.9 + - + +
153F THR* 3.2 4.2 + - - +
155F GLY* 1.3 78.2 - - - +
157F ILE* 1.3 73.4 + - + +
159F ASP* 3.4 3.5 + - - +
160F ILE* 3.3 28.6 + - + +
162J ARG* 3.9 32.1 - - + +
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Residues in contact with ILE 157 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39F LEU* 4.2 14.4 - - + -
86F ILE* 4.8 7.6 - - + -
89F ARG* 6.0 0.9 - - + -
138F PHE* 3.3 46.9 - - + +
141F THR* 4.0 14.8 - - + -
142F GLN* 3.9 12.6 - - + -
153F THR* 2.9 40.2 + - + +
154F ASP 4.0 2.0 - - - +
156F ILE* 1.3 88.3 - - + +
158F THR* 1.3 52.7 + - - +
160F ILE* 3.1 9.4 + - - +
161F LEU* 2.7 44.9 + - + +
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Residues in contact with THR 158 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151B ALA* 3.6 32.5 - - + +
152B VAL* 4.3 4.9 - - - +
155B GLY* 4.8 11.0 - - - -
142F GLN* 3.9 10.4 - - - +
154F ASP* 2.7 39.0 + - - -
155F GLY* 3.8 5.8 - - - -
157F ILE* 1.3 77.4 - - - +
159F ASP* 1.3 59.4 + - - +
161F LEU* 3.1 10.3 + - - +
162F ARG* 2.8 32.3 + - - +
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Residues in contact with ASP 159 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155F GLY 3.0 17.9 + - - +
156F ILE 3.6 5.8 - - - +
157F ILE 3.2 0.2 - - - -
158F THR* 1.3 76.2 - - - +
160F ILE* 1.3 62.7 + - + +
162F ARG* 3.2 29.6 + - - +
163F THR* 3.3 19.3 + - - +
162J ARG* 2.9 33.2 + - - +
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Residues in contact with ILE 160 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46F LEU* 6.2 0.2 - - + -
82F ALA* 3.7 29.6 - - + -
85F THR* 4.3 3.4 - - - +
86F ILE* 3.6 36.1 - - + -
138F PHE* 3.8 31.2 - - + -
156F ILE* 3.3 21.3 + - + +
157F ILE* 3.1 9.3 + - - +
159F ASP* 1.3 74.7 - - + +
161F LEU* 1.3 66.4 + - - +
163F THR* 3.0 12.7 + - - +
164F LEU* 2.9 26.8 + - + +
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Residues in contact with LEU 161 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151B ALA* 4.7 7.2 - - + -
152B VAL* 3.7 21.4 - - + +
135F SER* 3.6 30.7 + - - +
138F PHE* 3.3 29.4 - - + -
139F SER* 4.1 22.4 - - - +
142F GLN* 4.1 14.4 - - + -
157F ILE* 2.7 33.9 + - + +
158F THR* 3.3 11.9 - - - +
160F ILE* 1.3 74.4 - - - +
162F ARG* 1.3 56.6 + - - +
164F LEU* 3.6 4.0 - - + +
165F GLY* 2.9 25.5 + - - -
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Residues in contact with ARG 162 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92B GLN* 5.2 2.3 + - - +
152B VAL* 3.8 24.7 + - + +
155B GLY* 3.2 25.9 - - - -
156B ILE* 4.0 29.7 - - + +
159B ASP* 2.9 30.9 + - - +
158F THR* 2.8 17.9 + - + +
159F ASP* 3.4 24.6 + - - +
160F ILE 3.1 0.2 - - - -
161F LEU* 1.3 76.8 - - - +
163F THR* 1.3 64.2 + - + +
165F GLY* 3.4 2.1 + - - -
166F LYS* 3.2 24.1 + - + +
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Residues in contact with THR 163 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78F SER* 4.5 14.5 + - - +
159F ASP 3.3 13.9 + - - +
160F ILE* 3.0 15.8 + - - +
162F ARG* 1.3 78.6 - - + +
164F LEU* 1.3 66.2 + - - +
166F LYS* 3.4 8.1 + - - +
167F ALA* 3.1 22.9 + - - +
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Residues in contact with LEU 164 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131F PHE* 3.8 46.0 - - + +
134F LEU* 4.0 7.4 - - + -
135F SER* 3.9 23.3 - - - +
138F PHE* 3.5 37.2 - - + -
160F ILE* 2.9 23.2 + - + +
161F LEU* 3.6 8.5 - - + +
163F THR* 1.3 79.8 + - - +
165F GLY* 1.3 58.9 + - - +
167F ALA* 3.2 4.5 + - + +
168F ILE* 2.8 41.9 + - + +
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Residues in contact with GLY 165 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B ARG* 5.1 4.9 - - - -
92B GLN* 3.8 19.7 - - - +
152B VAL* 5.8 0.9 - - - -
135F SER* 5.6 2.2 + - - -
161F LEU 2.9 16.7 + - - -
162F ARG* 3.8 2.0 - - - -
164F LEU* 1.3 78.2 - - - +
166F LYS* 1.3 60.7 + - - +
168F ILE* 3.8 9.4 - - - +
169F TRP* 3.0 24.4 + - - +
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Residues in contact with LYS 166 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88B GLU* 3.8 24.3 + - + +
92B GLN* 3.7 18.9 + - - +
69C HIS* 5.1 4.4 + - - -
162F ARG* 3.2 14.2 + - + +
163F THR* 3.7 11.2 - - - +
164F LEU 3.2 0.2 - - - -
165F GLY* 1.3 75.2 - - - +
167F ALA* 1.3 57.2 + - - +
169F TRP* 3.3 12.2 + - + +
170F MET* 3.0 58.9 + - + +
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Residues in contact with ALA 167 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75F TYR* 4.0 18.6 - - + +
131F PHE* 3.8 26.2 - - + -
163F THR 3.1 16.4 + - - +
164F LEU* 3.7 5.4 - - + +
166F LYS* 1.3 74.7 - - - +
168F ILE* 1.3 59.8 + - - +
170F MET* 3.3 8.6 + - - +
171F LEU* 2.8 35.8 + - - +
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Residues in contact with ILE 168 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128F LYS* 3.7 12.1 - - - +
131F PHE* 3.6 45.5 - - + +
132F GLU* 3.7 33.4 - - + +
135F SER* 4.0 15.0 - - - +
164F LEU* 2.8 28.7 + - + +
165F GLY* 3.8 7.4 - - - +
167F ALA* 1.3 71.5 - - - +
169F TRP* 1.3 60.0 + - - +
171F LEU* 3.4 6.0 + - - +
172F GLY* 2.9 26.2 + - - -
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Residues in contact with TRP 169 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88B GLU* 3.5 27.1 - - + -
91B LEU* 3.6 50.0 - - + +
92B GLN* 3.4 35.7 - - + -
58C TRP 4.1 7.6 + - - -
65C PHE* 3.7 20.4 - + - -
69C HIS* 3.5 30.5 - + - -
165F GLY 3.0 9.6 + - - +
166F LYS* 3.6 13.7 - - + +
168F ILE* 1.3 78.7 - - - +
170F MET* 1.3 82.8 + - + +
172F GLY* 3.2 2.9 + - - -
173F ALA* 2.9 31.6 + - + +
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Residues in contact with MET 170 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C PHE* 3.8 22.9 - - + -
66C LYS* 4.9 24.7 - - + -
69C HIS* 4.7 12.1 - - - -
70C GLU* 5.9 0.4 - - - +
75F TYR* 5.2 4.0 - - - +
166F LYS* 3.0 56.8 + - + +
167F ALA* 3.3 8.5 + - - +
169F TRP* 1.3 95.6 - - + +
171F LEU* 1.3 56.0 + - - +
173F ALA* 3.1 3.8 + - - +
174F THR* 2.6 37.7 + - + +
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Residues in contact with LEU 171 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71F LEU* 4.6 5.2 - - + -
75F TYR* 3.5 19.7 - - + +
124F LEU* 3.8 41.3 - - + -
127F VAL* 3.3 27.6 - - + -
128F LYS* 3.7 29.6 - - + +
131F PHE* 3.8 14.6 - - + -
167F ALA 2.8 21.2 + - - +
168F ILE* 3.8 3.6 - - - +
170F MET* 1.3 75.9 - - - +
172F GLY* 1.3 63.6 + - - +
174F THR* 3.2 6.8 + - + +
175F LEU* 2.9 30.5 + - + +
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Residues in contact with GLY 172 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128F LYS* 3.5 22.8 - - - +
168F ILE 2.9 11.8 + - - -
169F TRP 3.2 4.2 + - - -
171F LEU* 1.3 77.0 - - - +
173F ALA* 1.3 56.3 + - - +
175F LEU* 3.8 3.1 - - - +
176F LYS* 2.9 30.3 + - - +
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Residues in contact with ALA 173 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60C ILE 4.4 4.7 - - - +
61C TYR* 3.4 9.1 - - + +
62C GLY 2.9 23.1 + - - -
65C PHE* 3.6 35.9 - - + -
169F TRP* 2.9 21.0 + - + +
170F MET 3.5 8.1 - - - +
172F GLY* 1.3 79.0 - - - +
174F THR* 1.3 60.0 + - - +
175F LEU 3.5 0.2 + - - -
176F LYS* 3.6 7.3 + - - -
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Residues in contact with THR 174 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C GLY* 3.0 15.6 - - - -
63C ILE* 3.2 39.6 + - - +
65C PHE* 3.7 18.2 - - + -
66C LYS* 4.6 7.6 - - + +
71F LEU* 6.2 3.6 - - + -
124F LEU* 3.9 23.2 - - + +
170F MET* 2.6 32.1 + - + +
171F LEU* 3.2 10.3 + - + -
173F ALA* 1.3 75.9 - - - +
175F LEU* 1.3 62.4 + - - +
176F LYS 4.4 0.5 - - - +
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Residues in contact with LEU 175 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63C ILE* 6.0 0.7 - - + -
121F VAL* 3.7 41.3 - - + +
124F LEU* 3.8 18.6 - - + +
125F ALA* 3.5 33.7 - - + +
128F LYS* 4.1 16.2 - - + -
171F LEU* 2.9 21.0 + - + +
172F GLY* 4.1 3.4 - - - +
174F THR* 1.3 83.4 + - - +
176F LYS* 1.3 65.5 + - - +
177F ALA* 3.4 5.4 + - - +
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Residues in contact with LYS 176 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C HIS 5.4 0.4 + - - -
61C TYR* 3.5 44.5 - - + +
62C GLY* 4.1 11.3 - - - -
117C GLU* 2.7 47.5 + - - +
172F GLY 2.9 18.7 + - - +
173F ALA* 3.7 10.3 - - - +
174F THR 3.4 1.3 - - - +
175F LEU* 1.3 78.9 - - - +
177F ALA* 1.3 68.8 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il