Contacts of the helix formed by residues 150 - 176 (chain K) in PDB entry 2FJC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 150 (chain K).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32K ILE* 5.9 2.7 - - + +
35K ILE* 3.8 13.8 - - + +
89K ARG* 2.9 27.5 + - - -
93K LEU* 4.1 12.6 - - - +
145K ALA* 2.8 18.3 + - - +
148K SER* 3.3 12.5 + - - +
149K GLY* 1.3 73.3 - - - +
151K ALA* 1.3 60.8 + - - +
152K VAL 3.6 0.9 + - - -
153K THR* 2.6 30.6 + - - -
154K ASP* 3.0 19.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 151 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A GLN* 3.5 42.6 - - + +
158A THR* 3.5 22.3 - - + +
161A LEU* 4.9 5.4 - - + -
149K GLY 2.7 10.2 + - - +
150K ASP* 1.3 72.0 - - - +
152K VAL* 1.3 56.3 + - + +
154K ASP* 3.1 9.1 - - - +
155K GLY 2.9 25.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 152 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158A THR* 4.2 6.7 - - - +
161A LEU* 3.7 44.2 - - + +
162A ARG* 3.8 21.3 + - + +
165A GLY* 6.0 0.7 - - - -
89K ARG* 3.4 37.2 - - - +
92K GLN* 4.7 3.1 - - - +
150K ASP* 3.3 1.0 + - - -
151K ALA* 1.3 76.5 - - + +
153K THR* 1.3 63.2 + - - +
155K GLY* 3.2 2.3 + - - -
156K ILE* 2.9 35.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 153 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35K ILE* 4.0 21.1 - - + -
39K LEU* 4.4 7.2 - - + -
89K ARG* 2.9 27.3 + - + +
93K LEU* 4.1 3.1 - - - +
141K THR* 4.4 4.7 - - + -
145K ALA* 4.0 10.1 - - + -
150K ASP* 2.6 34.4 + - - -
152K VAL* 1.3 75.8 - - - +
154K ASP* 1.3 64.4 + - - +
156K ILE* 4.3 4.7 - - - -
157K ILE* 2.9 49.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 154 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151H ALA* 5.1 0.3 - - - +
142K GLN* 2.9 25.4 - - - +
145K ALA* 3.7 10.9 - - + +
146K ALA* 3.4 26.9 - - - +
150K ASP 3.0 14.2 + - - +
151K ALA* 3.1 15.0 - - - +
153K THR* 1.3 78.1 - - - +
155K GLY* 1.3 58.3 + - - +
157K ILE* 3.4 3.8 + - - +
158K THR* 2.8 40.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 155 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158A THR* 5.0 5.4 - - - -
162A ARG* 3.2 16.8 - - - -
151K ALA 2.9 14.8 + - - -
152K VAL 3.7 1.6 - - - -
154K ASP* 1.3 78.1 - - - +
156K ILE* 1.3 61.3 + - - +
158K THR* 3.9 5.9 - - - -
159K ASP* 3.0 30.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 156 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162A ARG* 3.9 32.8 - - + +
85K THR* 4.0 30.1 - - - +
86K ILE* 4.4 7.0 - - + -
89K ARG* 3.9 36.8 - - + -
92K GLN* 5.5 2.2 - - - +
152K VAL* 2.9 24.8 + - + +
153K THR 3.2 7.2 + - - +
155K GLY* 1.3 77.9 - - - +
157K ILE* 1.3 74.5 + - + +
159K ASP* 3.3 3.5 + - - +
160K ILE* 3.3 27.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 157 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39K LEU* 4.3 9.2 - - + -
42K HIS* 4.9 0.4 - - + -
86K ILE* 4.9 7.2 - - + -
89K ARG* 6.1 0.7 - - + -
138K PHE* 3.3 45.8 - - + +
141K THR* 4.0 18.4 - - + -
142K GLN* 3.6 11.7 - - + -
153K THR* 2.9 40.9 + - + +
154K ASP 4.0 2.0 - - - +
156K ILE* 1.3 87.7 - - + +
158K THR* 1.3 53.9 + - - +
160K ILE* 3.1 8.7 + - - +
161K LEU* 2.7 46.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 158 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151H ALA* 3.5 44.0 - - + +
152H VAL* 4.1 5.6 - - + +
155H GLY* 5.1 8.5 - - - -
142K GLN* 3.8 2.9 + - - +
154K ASP* 2.8 38.7 + - - -
155K GLY* 3.9 6.3 - - - -
157K ILE* 1.3 77.5 - - - +
159K ASP* 1.3 60.0 + - - +
161K LEU* 3.1 9.6 + - - +
162K ARG* 2.8 32.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 159 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162A ARG* 3.0 32.2 + - - +
155K GLY* 3.0 18.1 + - - +
156K ILE* 3.6 5.8 - - - +
157K ILE 3.2 0.2 - - - -
158K THR* 1.3 77.9 - - - +
160K ILE* 1.3 63.5 + - + +
162K ARG* 3.3 29.9 + - - +
163K THR* 3.3 19.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 160 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46K LEU* 6.2 0.2 - - + -
82K ALA* 3.7 28.9 - - + -
85K THR* 4.3 2.9 - - - +
86K ILE* 3.6 35.7 - - + -
138K PHE* 3.8 31.0 - - + -
156K ILE* 3.5 21.3 - - + +
157K ILE* 3.1 10.4 + - - +
159K ASP* 1.3 74.9 - - + +
161K LEU* 1.3 62.7 + - - +
163K THR* 3.0 12.5 + - - +
164K LEU* 2.9 33.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 161 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151H ALA* 4.8 6.3 - - + -
152H VAL* 3.7 19.6 - - + +
135K SER* 3.6 30.5 + - - +
138K PHE* 3.3 29.2 - - + -
139K SER* 4.0 21.3 - - - +
142K GLN* 4.2 12.6 - - + -
157K ILE* 2.7 33.6 + - + +
158K THR* 3.1 13.7 + - - +
160K ILE* 1.3 73.8 - - - +
162K ARG* 1.3 56.8 + - - +
164K LEU* 3.3 4.8 + - + +
165K GLY* 2.9 26.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 162 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92H GLN* 5.0 3.0 + - - +
152H VAL* 3.7 25.6 + - + +
155H GLY* 3.3 25.9 - - - -
156H ILE* 3.9 29.0 - - + +
159H ASP* 3.1 30.1 + - - +
158K THR* 2.8 17.7 + - - +
159K ASP* 3.4 25.8 + - - +
160K ILE 3.2 0.4 - - - -
161K LEU* 1.3 77.0 - - - +
163K THR* 1.3 66.6 + - + +
165K GLY* 3.3 2.1 + - - -
166K LYS* 3.2 21.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 163 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78K SER* 4.4 15.1 + - - +
159K ASP 3.5 13.9 - - - +
160K ILE* 3.0 19.4 + - - +
162K ARG* 1.3 79.3 - - + +
164K LEU* 1.3 62.5 + - - +
166K LYS* 3.4 7.9 + - - +
167K ALA* 3.1 23.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 164 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131K PHE* 3.8 45.8 - - + +
134K LEU* 4.0 7.4 - - + -
135K SER* 3.8 24.0 - - - +
138K PHE* 3.5 37.5 - - + -
160K ILE* 2.9 23.0 + - + +
161K LEU* 3.6 8.1 - - + +
162K ARG 3.2 0.2 - - - -
163K THR* 1.3 78.6 + - - +
165K GLY* 1.3 58.4 + - - +
167K ALA* 3.1 4.1 + - + +
168K ILE* 2.8 42.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 165 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89H ARG* 5.1 4.0 - - - -
92H GLN* 3.9 19.4 - - - +
152H VAL* 6.0 0.7 - - - -
135K SER* 5.6 2.4 + - - -
161K LEU 2.9 16.8 + - - -
162K ARG 3.8 1.8 - - - -
163K THR 3.3 0.2 - - - -
164K LEU* 1.3 77.5 - - - +
166K LYS* 1.3 60.9 + - - +
168K ILE* 3.8 8.3 - - - +
169K TRP* 3.0 24.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 166 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69E HIS* 5.0 3.6 + - - -
88H GLU* 3.1 29.5 + - - +
92H GLN* 3.6 18.0 + - - +
162K ARG* 3.2 13.6 + - + +
163K THR* 3.7 10.3 - - - +
165K GLY* 1.3 76.3 - - - +
167K ALA* 1.3 57.4 + - - +
169K TRP* 3.4 12.3 + - + +
170K MET* 3.0 57.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 167 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75K TYR* 4.0 19.5 - - + -
131K PHE* 3.8 26.9 - - + -
163K THR 3.1 17.9 + - - +
164K LEU* 3.7 4.5 - - + +
166K LYS* 1.3 74.7 - - - +
168K ILE* 1.3 60.7 + - - +
170K MET* 3.2 8.8 + - - +
171K LEU* 2.8 36.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 168 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128K LYS* 3.8 10.0 - - + +
131K PHE* 3.6 44.4 - - + +
132K GLU* 3.7 33.7 - - + +
135K SER* 4.0 14.8 - - - +
164K LEU* 2.8 27.8 + - + +
165K GLY* 3.8 7.2 - - - +
167K ALA* 1.3 71.7 - - - +
169K TRP* 1.3 59.4 + - - +
171K LEU* 3.4 7.8 + - - +
172K GLY* 2.9 26.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TRP 169 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58E TRP 3.9 9.4 + - - -
65E PHE* 3.8 18.4 - + - -
69E HIS* 3.6 27.6 - + - -
88H GLU* 4.0 14.8 - - + -
91H LEU* 3.4 53.4 - - + +
92H GLN* 3.6 27.8 - - + -
165K GLY 3.0 18.1 + - - +
166K LYS* 3.6 24.7 - - + +
168K ILE* 1.3 79.7 - - - +
170K MET* 1.3 83.0 + - + +
172K GLY* 3.2 2.7 + - - -
173K ALA* 2.9 30.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 170 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65E PHE* 3.8 24.0 - - + -
66E LYS* 5.1 20.2 - - + -
69E HIS* 4.7 11.0 - - - +
70E GLU* 6.1 0.4 - - - +
75K TYR* 5.2 4.5 - - - +
166K LYS* 3.0 61.0 + - + +
167K ALA* 3.2 7.8 + - - +
169K TRP* 1.3 96.2 - - + +
171K LEU* 1.3 56.9 + - - +
173K ALA* 3.1 2.8 + - - +
174K THR* 2.7 37.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 171 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71K LEU* 4.6 4.9 - - + -
75K TYR* 3.5 18.8 - - + +
124K LEU* 3.8 41.5 - - + -
127K VAL* 3.3 27.6 - - + -
128K LYS* 3.7 28.9 - - + -
131K PHE* 3.8 14.6 - - + -
167K ALA 2.8 21.2 + - - +
168K ILE* 3.8 3.8 - - - +
170K MET* 1.3 75.6 - - - +
172K GLY* 1.3 64.8 + - - +
174K THR* 3.2 6.8 + - + +
175K LEU* 2.9 29.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 172 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128K LYS* 3.4 23.1 - - - +
168K ILE 2.9 12.6 + - - -
169K TRP* 3.6 4.0 - - - -
170K MET 3.2 0.2 - - - -
171K LEU* 1.3 78.0 - - - +
173K ALA* 1.3 55.9 + - - +
175K LEU* 3.8 2.7 - - - +
176K LYS* 2.9 31.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 173 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60E ILE 4.4 5.2 - - - +
61E TYR* 3.3 9.7 - - + +
62E GLY 2.9 23.0 + - - -
65E PHE* 3.6 35.4 - - + -
169K TRP* 2.9 22.1 + - + +
170K MET 3.1 8.0 + - - +
172K GLY* 1.3 77.4 - - - +
174K THR* 1.3 59.1 + - - +
175K LEU 3.5 0.2 + - - -
176K LYS* 3.6 8.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 174 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62E GLY* 2.9 32.4 - - - -
63E ILE* 3.1 22.6 + - - +
65E PHE* 3.5 19.7 - - + -
66E LYS* 4.5 7.4 - - + +
71K LEU* 6.2 3.6 - - + -
124K LEU* 3.8 24.2 - - + +
170K MET* 2.7 31.2 + - + +
171K LEU* 3.5 9.1 + - + +
173K ALA* 1.3 76.2 - - - +
175K LEU* 1.3 63.0 + - - +
176K LYS 3.4 0.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 175 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63E ILE* 6.0 0.7 - - + -
121K VAL* 3.7 41.1 - - + +
124K LEU* 3.8 17.5 - - + +
125K ALA* 3.4 35.2 - - + +
128K LYS* 4.2 14.8 - - + -
171K LEU 2.9 20.3 + - - +
172K GLY* 4.1 3.6 - - - +
174K THR* 1.3 81.9 - - - +
176K LYS* 1.3 67.1 + - - +
177K ALA* 3.4 5.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 176 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59E HIS 5.5 0.4 + - - -
61E TYR* 3.5 42.3 - - + +
62E GLY* 4.1 10.7 - - - -
63E ILE 5.3 0.2 + - - -
117E GLU* 2.5 51.8 + - - +
172K GLY 2.9 18.7 + - - +
173K ALA* 3.7 10.8 - - - +
174K THR 3.4 1.7 - - - +
175K LEU* 1.3 78.7 - - - +
177K ALA* 1.3 68.1 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il