Contacts of the helix formed by residues 150 - 176 (chain L) in PDB entry 2FJC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 150 (chain L).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32L ILE* 5.9 2.9 - - - +
35L ILE* 3.9 13.1 - - + +
89L ARG* 2.9 27.3 + - - -
93L LEU* 4.0 14.4 - - - +
145L ALA* 2.8 19.4 + - + +
146L ALA* 5.8 0.2 - - - -
148L SER* 3.3 13.3 + - - +
149L GLY* 1.3 72.8 - - - +
151L ALA* 1.3 61.6 + - - +
152L VAL 3.7 1.0 + - - -
153L THR* 2.8 29.2 + - - -
154L ASP* 3.0 19.7 + - - +
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Residues in contact with ALA 151 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142C GLN* 3.6 39.0 - - + +
154C ASP* 5.1 0.2 - - - +
158C THR* 3.5 25.1 - - + +
161C LEU* 4.9 6.1 - - + -
149L GLY 2.8 9.9 + - - +
150L ASP* 1.3 70.3 - - - +
152L VAL* 1.3 58.0 + - - +
154L ASP* 3.2 9.3 - - - +
155L GLY 2.9 25.1 + - - -
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Residues in contact with VAL 152 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C THR* 4.2 7.0 - - - +
161C LEU* 3.7 45.3 - - + +
162C ARG* 3.8 21.6 + - + +
165C GLY* 6.0 0.7 - - - -
89L ARG* 3.5 37.2 - - - +
92L GLN* 4.6 2.5 - - - +
150L ASP* 3.3 1.0 + - - -
151L ALA* 1.3 77.6 - - + +
153L THR* 1.3 64.2 + - - +
155L GLY* 3.2 2.9 + - - -
156L ILE* 2.9 35.5 + - + +
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Residues in contact with THR 153 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35L ILE* 4.0 20.9 - - + -
39L LEU* 4.3 8.5 - - + -
89L ARG* 2.8 27.1 + - + +
93L LEU* 4.0 3.1 - - - +
141L THR* 4.4 2.7 - - + -
145L ALA* 4.0 10.3 - - + -
150L ASP* 2.8 32.7 + - - -
152L VAL* 1.3 76.7 - - - +
154L ASP* 1.3 63.3 - - - +
156L ILE* 3.2 5.5 + - - +
157L ILE* 2.9 43.7 + - + +
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Residues in contact with ASP 154 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151E ALA* 5.1 0.2 - - - +
142L GLN* 2.8 31.5 - - - +
145L ALA* 3.7 11.4 - - + +
146L ALA* 3.5 20.8 - - - +
150L ASP 3.0 14.2 + - - +
151L ALA* 3.2 14.4 - - - +
153L THR* 1.3 77.8 - - - +
155L GLY* 1.3 58.6 + - - +
157L ILE* 3.4 3.5 + - - +
158L THR* 2.8 41.2 + - - -
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Residues in contact with GLY 155 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C THR* 5.0 6.7 - - - -
162C ARG* 3.3 15.3 - - - -
151L ALA 2.9 13.8 + - - -
152L VAL 3.2 3.1 + - - -
154L ASP* 1.3 78.5 - - - +
156L ILE* 1.3 60.7 + - - +
158L THR* 3.8 5.2 - - - -
159L ASP* 3.0 31.1 + - - +
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Residues in contact with ILE 156 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162C ARG* 3.6 32.3 - - + +
85L THR* 3.9 29.6 - - - +
86L ILE* 4.4 7.6 - - + -
89L ARG* 3.9 27.8 - - + -
92L GLN* 5.5 2.0 - - - +
152L VAL* 2.9 36.6 + - + +
153L THR* 3.7 4.7 - - - +
155L GLY* 1.3 78.4 - - - +
157L ILE* 1.3 70.4 + - + +
159L ASP* 3.3 4.1 + - - +
160L ILE* 3.3 28.2 + - + +
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Residues in contact with ILE 157 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39L LEU* 4.2 15.7 - - + -
86L ILE* 4.8 7.6 - - + -
89L ARG* 6.1 1.1 - - + -
138L PHE* 3.3 46.7 - - + +
141L THR* 4.1 13.7 - - + -
142L GLN* 3.8 11.9 - - + -
153L THR* 2.9 41.1 + - + +
154L ASP 4.0 1.8 - - - +
156L ILE* 1.3 84.5 - - + +
158L THR* 1.3 62.2 + - - +
160L ILE* 3.1 8.9 + - - +
161L LEU* 2.7 40.4 + - + +
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Residues in contact with THR 158 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151E ALA* 3.6 41.8 - - + +
152E VAL* 4.2 6.0 - - + +
155E GLY* 5.0 9.2 - - - -
142L GLN* 3.9 3.1 - - - +
154L ASP* 2.8 38.3 + - - -
155L GLY* 3.8 6.3 - - - -
157L ILE* 1.3 76.6 - - - +
159L ASP* 1.3 60.2 + - - +
161L LEU* 3.2 10.4 + - - +
162L ARG* 2.9 32.7 + - + +
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Residues in contact with ASP 159 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162C ARG* 3.1 32.4 + - - +
155L GLY* 3.0 18.1 + - - +
156L ILE* 3.5 5.8 - - - +
157L ILE 3.2 0.2 - - - -
158L THR* 1.3 78.7 - - - +
160L ILE* 1.3 64.2 + - + +
162L ARG* 3.2 29.8 + - - +
163L THR* 3.3 18.6 + - - +
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Residues in contact with ILE 160 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82L ALA* 3.7 28.3 - - + -
85L THR* 4.3 3.6 - - - +
86L ILE* 3.6 36.6 - - + -
138L PHE* 3.8 30.1 - - + -
156L ILE* 3.4 21.1 - - + +
157L ILE* 3.1 8.7 + - - +
159L ASP* 1.3 74.9 - - + +
161L LEU* 1.3 65.9 + - - +
163L THR* 3.1 13.4 + - - +
164L LEU* 2.9 28.1 + - + +
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Residues in contact with LEU 161 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151E ALA* 5.0 4.5 - - + -
152E VAL* 3.8 19.7 - - + +
135L SER* 3.7 31.6 + - - +
138L PHE* 3.3 27.1 - - + -
139L SER* 3.9 23.3 - - - +
142L GLN* 4.1 13.7 - - + -
157L ILE* 2.7 35.0 + - + +
158L THR* 3.3 12.1 - - - +
160L ILE* 1.3 72.8 - - - +
162L ARG* 1.3 58.0 + - - +
164L LEU* 3.4 6.3 + - + +
165L GLY* 2.9 26.3 + - - -
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Residues in contact with ARG 162 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92E GLN* 5.1 3.5 + - - +
152E VAL* 3.9 25.7 + - + +
155E GLY* 3.3 26.3 + - - -
156E ILE* 3.9 29.6 - - + +
159E ASP* 3.1 30.3 + - - +
158L THR* 2.9 17.4 + - - +
159L ASP* 3.4 24.1 + - - +
160L ILE 3.1 0.6 - - - -
161L LEU* 1.3 77.5 - - - +
163L THR* 1.3 65.6 + - + +
165L GLY* 3.3 1.9 + - - -
166L LYS* 3.2 21.8 + - + +
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Residues in contact with THR 163 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78L SER* 4.4 14.1 + - - +
159L ASP 3.3 13.4 + - - +
160L ILE* 3.1 14.4 + - - +
162L ARG* 1.3 78.9 - - + +
164L LEU* 1.3 66.8 + - - +
166L LYS* 3.4 7.1 + - - +
167L ALA* 3.1 23.7 + - - +
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Residues in contact with LEU 164 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131L PHE* 3.8 44.4 - - + +
134L LEU* 4.0 7.6 - - + -
135L SER* 3.8 24.5 - - - +
138L PHE* 3.5 36.1 - - + -
160L ILE* 2.9 22.4 + - + +
161L LEU* 3.7 8.5 - - + +
163L THR* 1.3 81.7 + - - +
165L GLY* 1.3 57.9 + - - +
167L ALA* 3.2 3.5 + - - +
168L ILE* 2.8 42.5 + - + +
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Residues in contact with GLY 165 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89E ARG* 5.2 4.0 - - - -
92E GLN* 4.0 19.0 - - - +
152E VAL* 6.1 0.2 - - - -
135L SER* 5.6 1.5 + - - -
161L LEU 2.9 16.3 + - - -
162L ARG* 3.3 2.4 + - - -
163L THR 3.3 0.2 - - - -
164L LEU* 1.3 77.8 - - - +
166L LYS* 1.3 60.7 + - - +
168L ILE* 3.8 8.9 - - - +
169L TRP* 3.0 25.1 + - - +
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Residues in contact with LYS 166 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88E GLU* 3.0 29.8 + - + +
92E GLN* 3.8 17.8 + - - +
69H HIS* 4.6 6.7 + - - -
162L ARG* 3.2 12.8 + - + +
163L THR* 3.7 10.5 - - - +
165L GLY* 1.3 76.8 - - - +
167L ALA* 1.3 56.9 + - - +
169L TRP* 3.3 21.2 + - + +
170L MET* 2.9 68.6 + - + +
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Residues in contact with ALA 167 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75L TYR* 4.1 19.1 - - + +
131L PHE* 3.8 26.7 - - + -
163L THR 3.1 16.4 + - - +
164L LEU* 3.6 5.6 - - + +
166L LYS* 1.3 75.6 - - - +
168L ILE* 1.3 59.5 + - - +
170L MET* 3.7 7.3 - - - +
171L LEU* 2.8 36.9 + - - +
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Residues in contact with ILE 168 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128L LYS* 3.7 14.5 - - - +
131L PHE* 3.6 45.1 - - + +
132L GLU* 3.8 31.6 - - + +
135L SER* 4.0 14.6 - - - +
164L LEU* 2.8 28.8 + - + +
165L GLY* 3.8 7.4 - - - +
167L ALA* 1.3 71.5 - - - +
169L TRP* 1.3 59.3 + - - +
171L LEU* 3.4 7.2 + - - +
172L GLY* 2.9 24.4 + - - -
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Residues in contact with TRP 169 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88E GLU* 4.1 17.0 - - + -
91E LEU* 3.5 49.4 - - + +
92E GLN* 3.7 22.9 - - + -
58H TRP 4.0 8.7 + - - -
65H PHE* 3.6 19.5 - + - -
69H HIS* 3.5 29.6 - + - -
165L GLY 3.0 18.3 + - - +
166L LYS* 3.6 26.5 - - + +
168L ILE* 1.3 78.9 - - - +
170L MET* 1.3 88.0 + - + +
172L GLY* 3.2 2.3 + - - -
173L ALA* 2.9 25.4 + - + +
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Residues in contact with MET 170 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65H PHE* 3.7 23.5 - - + -
66H LYS* 5.0 22.0 - - + -
69H HIS* 4.6 9.6 - - - -
70H GLU* 6.1 0.2 - - - +
75L TYR* 5.2 4.3 - - - +
166L LYS* 2.9 59.5 + - + +
167L ALA* 3.2 7.2 + - - +
169L TRP* 1.3 97.0 - - + +
171L LEU* 1.3 57.3 + - - +
173L ALA* 3.1 3.3 + - - +
174L THR* 2.6 37.4 + - + +
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Residues in contact with LEU 171 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71L LEU* 4.5 5.2 - - + -
75L TYR* 3.5 19.7 - - + +
124L LEU* 3.9 38.6 - - + -
127L VAL* 3.3 28.9 - - + -
128L LYS* 3.6 28.7 - - + +
131L PHE* 3.8 19.5 - - + -
167L ALA 2.8 20.9 + - - +
168L ILE* 3.7 3.8 - - - +
170L MET* 1.3 72.1 - - - +
172L GLY* 1.3 57.7 - - - +
174L THR* 3.2 6.9 + - + +
175L LEU* 2.9 36.4 + - + +
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Residues in contact with GLY 172 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128L LYS* 3.5 23.5 - - - +
168L ILE 2.9 12.0 + - - -
169L TRP* 3.6 3.4 - - - -
170L MET 3.2 0.2 - - - -
171L LEU* 1.3 77.8 - - - +
173L ALA* 1.3 56.9 + - - +
175L LEU* 3.8 2.7 - - - +
176L LYS* 3.0 30.1 + - - +
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Residues in contact with ALA 173 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60H ILE 4.5 4.9 - - - +
61H TYR* 3.5 8.6 - - + +
62H GLY 2.8 25.2 + - - -
65H PHE* 3.6 35.4 - - + -
169L TRP* 2.9 21.0 + - + +
170L MET 3.1 7.8 + - - +
172L GLY* 1.3 78.5 - - - +
174L THR* 1.3 59.4 + - - +
176L LYS* 3.7 8.2 + - - -
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Residues in contact with THR 174 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62H GLY* 2.9 14.9 - - - -
63H ILE* 3.2 40.5 + - - +
65H PHE* 3.6 18.8 - - + -
66H LYS* 4.5 8.5 - - + +
71L LEU* 6.2 3.1 - - + -
124L LEU* 3.8 24.2 - - + +
170L MET* 2.6 32.0 + - + +
171L LEU* 3.7 9.9 + - + +
173L ALA* 1.3 75.4 - - - +
175L LEU* 1.3 61.2 + - - +
176L LYS 4.4 0.3 - - - +
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Residues in contact with LEU 175 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63H ILE* 5.9 0.4 - - + -
121L VAL* 3.7 41.7 - - + +
124L LEU* 3.8 17.5 - - + +
125L ALA* 3.4 35.0 - - + +
128L LYS* 4.2 15.0 - - + -
171L LEU 2.9 20.1 + - - +
172L GLY* 4.1 3.6 - - - +
174L THR* 1.3 83.1 - - - +
176L LYS* 1.3 65.1 + - - +
177L ALA* 3.4 5.7 + - - +
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Residues in contact with LYS 176 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59H HIS 5.5 0.4 + - - -
61H TYR* 3.6 45.8 - - + +
62H GLY* 4.1 12.0 - - - -
63H ILE 5.1 0.2 + - - -
117H GLU* 2.9 44.5 + - - +
172L GLY 3.0 18.0 + - - +
173L ALA* 3.7 10.8 - - - +
174L THR 3.4 1.1 - - - +
175L LEU* 1.3 77.4 - - - +
177L ALA* 1.3 67.8 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il