Contacts of the helix formed by residues 150 - 176 (chain P) in PDB entry 2FJC
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 150 (chain P).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32P ILE* 6.1 0.5 - - - +
35P ILE* 3.9 12.9 - - + +
89P ARG* 2.8 28.5 + - - -
93P LEU* 4.0 14.3 - - - +
145P ALA* 2.8 20.2 + - + +
148P SER* 3.3 12.1 + - - +
149P GLY* 1.3 72.4 - - - +
151P ALA* 1.3 61.5 + - - +
152P VAL 3.6 1.0 + - - -
153P THR* 2.6 29.8 + - - -
154P ASP* 3.0 18.9 + - - +
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Residues in contact with ALA 151 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149P GLY 2.8 13.5 + - - +
150P ASP* 1.3 72.7 - - - +
152P VAL* 1.3 59.4 + - + +
154P ASP* 3.1 9.7 - - - +
155P GLY* 2.9 26.9 + - - -
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Residues in contact with VAL 152 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89P ARG* 3.4 38.6 - - - +
92P GLN* 4.7 4.3 - - - +
150P ASP* 3.3 1.4 + - - -
151P ALA* 1.3 79.0 - - + +
153P THR* 1.3 62.2 + - - +
155P GLY* 3.2 2.8 + - - -
156P ILE* 2.9 35.8 + - + +
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Residues in contact with THR 153 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35P ILE* 4.0 21.3 - - + -
39P LEU* 4.3 9.0 - - + -
89P ARG* 2.8 26.9 + - + +
93P LEU* 4.0 3.6 - - - +
141P THR* 4.4 3.4 - - + -
145P ALA* 4.1 9.9 - - + -
150P ASP* 2.6 34.1 + - - -
152P VAL* 1.3 75.6 - - - +
154P ASP* 1.3 64.5 + - - +
156P ILE* 3.2 5.7 + - - -
157P ILE* 2.9 48.2 + - + +
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Residues in contact with ASP 154 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142P GLN* 2.8 30.4 - - - +
145P ALA* 3.7 11.2 - - + +
146P ALA* 3.6 23.0 - - - +
150P ASP 3.0 14.6 + - - +
151P ALA* 3.1 15.4 - - - +
153P THR* 1.3 76.5 - - - +
155P GLY* 1.3 55.3 + - - +
157P ILE* 3.4 3.5 + - - +
158P THR* 2.7 43.1 + - - -
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Residues in contact with GLY 155 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151P ALA 2.9 13.7 + - - -
152P VAL* 3.7 2.7 - - - -
154P ASP* 1.3 80.1 - - - +
156P ILE* 1.3 60.5 + - - +
158P THR* 3.4 5.0 + - - -
159P ASP* 2.9 34.3 + - - +
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Residues in contact with ILE 156 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85P THR* 4.1 27.8 - - - +
86P ILE* 4.4 7.6 - - + -
89P ARG* 3.8 36.8 - - + -
92P GLN* 5.5 2.2 - - - +
152P VAL* 2.9 28.5 + - + +
153P THR* 3.2 5.1 + - - +
155P GLY* 1.3 78.8 - - - +
157P ILE* 1.3 73.8 + - + +
159P ASP* 3.4 7.6 + - - +
160P ILE* 3.3 28.1 + - + +
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Residues in contact with ILE 157 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39P LEU* 4.3 13.5 - - + -
42P HIS* 4.9 0.9 - - + -
86P ILE* 4.8 7.2 - - + -
89P ARG* 6.0 0.9 - - + -
138P PHE* 3.3 45.3 - - + +
141P THR* 4.1 14.8 - - + -
142P GLN* 3.6 18.8 - - + -
153P THR* 2.9 41.3 + - + +
154P ASP 4.0 2.0 - - - +
156P ILE* 1.3 86.9 - - + +
158P THR* 1.3 53.0 + - - +
160P ILE* 3.1 8.9 + - - +
161P LEU* 2.7 40.2 + - + +
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Residues in contact with THR 158 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142P GLN* 3.8 11.4 + - - +
154P ASP* 2.7 38.7 + - - -
155P GLY* 3.8 6.1 - - - -
157P ILE* 1.3 78.2 - - - +
159P ASP* 1.3 59.6 + - - +
161P LEU* 3.2 13.2 + - + +
162P ARG* 2.9 37.6 + - + +
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Residues in contact with ASP 159 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155P GLY* 2.9 24.0 + - - +
156P ILE* 3.6 7.5 - - - +
157P ILE 3.2 0.2 - - - -
158P THR* 1.3 78.4 - - - +
160P ILE* 1.3 64.7 + - + +
162P ARG* 3.2 30.2 + - - +
163P THR* 3.3 18.7 + - - +
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Residues in contact with ILE 160 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46P LEU* 6.2 0.2 - - + -
82P ALA* 3.7 29.8 - - + -
85P THR* 4.3 3.4 - - - +
86P ILE* 3.6 36.1 - - + -
138P PHE* 3.8 30.3 - - + -
156P ILE* 3.3 21.5 + - + +
157P ILE* 3.1 9.7 + - - +
159P ASP* 1.3 73.7 - - + +
161P LEU* 1.3 66.5 + - - +
163P THR* 3.0 12.4 + - - +
164P LEU* 2.9 27.6 + - + +
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Residues in contact with LEU 161 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135P SER* 3.7 31.1 + - - +
138P PHE* 3.3 29.8 - - + -
139P SER* 3.9 22.0 - - - +
142P GLN* 4.2 12.3 - - + -
157P ILE* 2.7 29.9 + - + +
158P THR* 3.2 16.6 + - + +
160P ILE* 1.3 77.3 - - - +
162P ARG* 1.3 56.4 + - - +
164P LEU* 3.3 4.7 + - + +
165P GLY* 2.9 26.3 + - - -
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Residues in contact with ARG 162 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158P THR* 2.9 21.9 + - + +
159P ASP* 3.4 24.8 + - - +
160P ILE 3.1 0.4 - - - -
161P LEU* 1.3 77.2 - - - +
163P THR* 1.3 64.1 + - + +
165P GLY* 3.3 2.5 + - - -
166P LYS* 3.2 22.1 + - + +
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Residues in contact with THR 163 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78P SER* 4.4 14.2 + - - +
159P ASP 3.5 14.1 - - - +
160P ILE* 3.0 16.2 + - - +
162P ARG* 1.3 78.4 - - + +
164P LEU* 1.3 65.6 + - - +
166P LYS* 3.4 8.0 + - - +
167P ALA* 3.1 23.6 + - - +
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Residues in contact with LEU 164 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131P PHE* 3.8 46.0 - - + +
134P LEU* 4.1 7.0 - - + -
135P SER* 4.0 23.3 - - - +
138P PHE* 3.5 37.5 - - + -
160P ILE* 2.9 22.4 + - + +
161P LEU* 3.6 8.7 - - + +
163P THR* 1.3 77.5 + - - +
165P GLY* 1.3 60.8 + - - +
167P ALA* 3.2 3.2 + - - +
168P ILE* 2.8 42.3 + - + +
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Residues in contact with GLY 165 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135P SER* 5.5 2.4 + - - -
161P LEU 2.9 16.7 + - - -
162P ARG 3.3 2.2 + - - -
164P LEU* 1.3 77.8 - - - +
166P LYS* 1.3 60.3 + - - +
168P ILE* 3.8 7.5 - - - +
169P TRP* 3.0 25.5 + - - +
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Residues in contact with LYS 166 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69O HIS* 5.4 3.8 + - - -
162P ARG* 3.2 13.4 + - + +
163P THR* 3.7 11.2 - - - +
165P GLY* 1.3 77.0 - - - +
167P ALA* 1.3 57.6 + - - +
169P TRP* 3.3 25.0 + - + +
170P MET* 3.0 56.7 + - + +
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Residues in contact with ALA 167 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75P TYR* 3.9 18.2 - - + -
131P PHE* 3.7 27.1 - - + -
163P THR 3.1 17.2 + - - +
164P LEU* 3.2 4.0 + - - +
166P LYS* 1.3 74.7 - - - +
168P ILE* 1.3 59.7 + - - +
170P MET* 3.2 8.8 + - - +
171P LEU* 2.8 36.1 + - - +
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Residues in contact with ILE 168 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128P LYS* 3.7 13.5 - - + +
131P PHE* 3.6 46.0 - - + +
132P GLU* 3.7 34.5 - - + +
135P SER* 4.0 14.4 - - - +
164P LEU* 2.8 29.3 + - + +
165P GLY* 3.8 6.3 - - - +
167P ALA* 1.3 72.4 - - - +
169P TRP* 1.3 59.3 + - - +
171P LEU* 3.4 6.4 + - - +
172P GLY* 2.9 24.4 + - - -
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Residues in contact with TRP 169 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57O HIS 5.0 0.2 - - - -
58O TRP* 3.9 30.9 + + + -
65O PHE* 3.8 14.8 - + - -
69O HIS* 3.8 28.5 - + - -
165P GLY 3.0 17.9 + - - +
166P LYS* 3.6 27.8 - - + +
167P ALA 3.2 0.2 - - - -
168P ILE* 1.3 79.1 - - - +
170P MET* 1.3 90.0 + - + +
172P GLY* 3.2 2.9 + - - -
173P ALA* 2.9 25.2 + - + +
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Residues in contact with MET 170 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65O PHE* 3.7 23.1 - - + -
66O LYS* 5.2 17.0 - - + -
69O HIS* 4.6 13.0 - - - +
75P TYR* 5.2 4.5 - - - +
166P LYS* 3.0 54.3 + - + +
167P ALA* 3.8 8.1 - - - +
169P TRP* 1.3 97.6 - - + +
171P LEU* 1.3 57.4 + - - +
173P ALA* 3.1 3.3 + - - +
174P THR* 2.6 37.8 + - + +
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Residues in contact with LEU 171 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71P LEU* 4.6 5.2 - - + -
75P TYR* 3.5 20.0 - - + +
124P LEU* 3.9 40.8 - - + -
127P VAL* 3.3 26.7 - - + -
128P LYS* 3.7 29.4 - - + -
131P PHE* 3.8 15.7 - - + -
167P ALA 2.8 23.5 + - - +
168P ILE* 3.8 4.0 - - - +
170P MET* 1.3 73.1 - - - +
172P GLY* 1.3 64.2 + - - +
174P THR* 3.2 6.5 + - + +
175P LEU* 2.9 29.7 + - + +
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Residues in contact with GLY 172 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128P LYS* 3.5 23.3 - - - +
168P ILE 2.9 12.0 + - - -
169P TRP* 3.6 3.8 - - - -
171P LEU* 1.3 77.8 - - - +
173P ALA* 1.3 55.7 + - - +
175P LEU* 3.8 2.7 - - - +
176P LYS* 2.9 31.2 + - - +
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Residues in contact with ALA 173 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58O TRP 6.1 0.2 - - - +
60O ILE 4.4 5.6 - - - +
61O TYR* 3.4 9.3 - - + +
62O GLY 2.9 22.7 + - - -
65O PHE* 3.7 33.4 - - + -
169P TRP* 2.9 21.3 + - + +
170P MET 3.1 8.0 + - - +
172P GLY* 1.3 79.3 - - - +
174P THR* 1.3 58.1 + - - +
176P LYS* 3.7 7.1 + - - -
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Residues in contact with THR 174 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62O GLY* 3.0 31.4 - - - -
63O ILE* 3.3 22.7 + - - +
65O PHE* 3.6 20.4 - - + -
66O LYS* 4.6 7.0 - - + +
124P LEU* 3.8 23.3 - - + +
170P MET* 2.6 32.0 + - + +
171P LEU* 3.7 9.1 + - + +
173P ALA* 1.3 76.0 - - - +
175P LEU* 1.3 63.7 + - - +
176P LYS 3.4 0.6 - - - +
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Residues in contact with LEU 175 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63O ILE* 5.9 0.9 - - + -
121P VAL* 3.7 42.0 - - + +
124P LEU* 3.8 17.3 - - + +
125P ALA* 3.5 34.5 - - + +
128P LYS* 4.2 15.7 - - + -
171P LEU 2.9 20.5 + - - +
172P GLY* 4.1 3.1 - - - +
174P THR* 1.3 83.2 - - - +
176P LYS* 1.3 66.7 + - - +
177P ALA* 3.4 5.7 + - - +
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Residues in contact with LYS 176 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59O HIS 5.6 0.2 + - - -
61O TYR* 3.6 42.9 - - + +
62O GLY* 4.2 10.4 - - - -
117O GLU* 2.7 50.3 + - - +
172P GLY 2.9 17.5 + - - +
173P ALA* 3.7 11.0 - - - +
174P THR 3.4 0.9 - - - +
175P LEU* 1.3 78.6 - - - +
177P ALA* 1.3 68.1 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il