Contacts of the helix formed by residues 289 - 316 (chain A) in PDB entry 2GFP


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with TRP 289 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    237A  VAL*     5.9     3.8    -      -       +      -
    240A  LEU*     6.4     2.2    -      -       +      -
    243A  MET*     6.1     6.7    -      -       +      -
    244A  THR*     5.5     5.8    -      -       +      -
    287A  LEU      2.8    10.6    +      -       -      +
    288A  MET*     1.3    85.3    -      -       +      +
    290A  ILE*     1.3    69.5    +      -       +      +
    293A  TRP*     2.8    75.5    -      +       -      -
----------------------------------------------------------
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Residues in contact with ILE 290 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    282A  LEU*     3.8    21.3    -      -       +      -
    286A  LEU*     3.5    39.3    -      -       +      -
    287A  LEU      4.3     5.4    -      -       -      +
    289A  TRP*     1.3    80.3    -      -       +      +
    291A  PRO*     1.3    80.3    -      -       +      +
    293A  TRP*     5.0     0.7    -      -       -      -
    294A  PHE*     2.8    27.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 291 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    279A  ILE*     4.7     3.7    -      -       -      +
    282A  LEU*     3.0    39.1    -      -       +      +
    283A  LEU*     4.2    13.2    -      -       +      +
    285A  GLY      5.0     0.2    -      -       -      +
    286A  LEU      4.0    16.8    -      -       -      +
    287A  LEU      4.3     1.3    -      -       -      +
    288A  MET*     2.8    29.8    -      -       -      +
    289A  TRP      3.1     0.4    -      -       -      -
    290A  ILE*     1.3   101.2    -      -       +      +
    292A  ASP*     1.3    67.8    +      -       -      +
    294A  PHE*     3.4     7.1    -      -       -      +
    295A  GLY*     3.2    11.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 292 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    226A  PHE*     4.9     3.1    -      -       +      +
    227A  GLU*     3.0    36.2    -      -       +      +
    230A  SER*     3.1    34.8    +      -       -      +
    279A  ILE*     5.8     2.0    -      -       -      -
    283A  LEU*     5.2     7.2    -      -       +      +
    288A  MET*     4.6     2.6    -      -       -      +
    291A  PRO*     1.3    83.3    -      -       +      +
    293A  TRP*     1.3    84.6    +      -       -      +
    295A  GLY*     2.8    22.5    +      -       -      +
    296A  VAL*     3.2    12.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 293 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    230A  SER*     5.0     8.0    +      -       -      -
    231A  GLY*     6.3     1.8    -      -       -      -
    237A  VAL*     3.6    36.8    -      -       +      -
    244A  THR*     4.7    32.6    -      -       +      +
    245A  VAL*     6.1     0.2    -      -       -      -
    248A  LEU*     5.6     0.4    -      -       -      +
    288A  MET*     3.9    32.3    +      -       -      +
    289A  TRP*     2.8    83.9    +      +       -      +
    290A  ILE*     4.5     0.9    -      -       -      +
    291A  PRO      3.2     0.8    -      -       -      -
    292A  ASP*     1.3   101.5    +      -       -      +
    294A  PHE*     1.3    61.1    +      -       -      +
    295A  GLY      3.3     0.2    +      -       -      -
    296A  VAL*     3.4    17.1    +      -       -      +
    297A  MET*     3.4    10.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 294 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    275A  TRP*     3.3    41.3    -      +       -      -
    278A  VAL*     3.9    14.8    -      -       +      -
    279A  ILE*     3.4    37.4    -      -       +      +
    282A  LEU*     3.9    24.9    -      -       +      -
    290A  ILE*     2.8    26.8    +      -       +      +
    291A  PRO      4.1     1.8    -      -       -      -
    293A  TRP*     1.3    74.9    -      -       -      +
    295A  GLY*     1.3    64.6    +      -       -      +
    297A  MET*     2.9    46.6    -      -       +      +
    298A  ASN*     3.0    19.8    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 295 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    223A  ILE*     5.8     0.2    -      -       -      -
    227A  GLU*     3.1    18.6    -      -       -      +
    279A  ILE*     3.4    28.7    -      -       -      +
    291A  PRO      3.2     6.7    +      -       -      -
    292A  ASP*     2.8    14.1    +      -       -      -
    294A  PHE*     1.3    79.4    -      -       -      +
    296A  VAL*     1.3    60.8    +      -       -      -
    298A  ASN*     3.4     2.9    +      -       -      +
    299A  VAL*     3.2    16.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 296 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    227A  GLU*     3.4    49.9    +      -       +      +
    228A  ALA*     4.2     9.4    -      -       +      +
    241A  SER*     5.9     2.5    -      -       -      +
    245A  VAL*     3.3    35.0    -      -       +      -
    249A  PHE*     5.4     0.4    -      -       +      -
    292A  ASP      3.2     9.1    +      -       -      +
    293A  TRP*     3.7     9.9    -      -       -      +
    295A  GLY*     1.3    71.7    -      -       -      +
    297A  MET*     1.3    67.7    +      -       -      +
    299A  VAL*     3.1    11.9    +      -       +      +
    300A  TRP*     3.2    12.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 297 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    245A  VAL*     5.4     3.2    -      -       -      +
    248A  LEU*     3.3    58.4    -      -       +      +
    249A  PHE*     5.9     0.4    -      -       -      -
    251A  LEU*     5.2     8.7    -      -       +      -
    252A  PRO*     4.6     8.9    -      -       +      +
    275A  TRP*     5.9     3.8    -      -       +      -
    293A  TRP      3.4     4.8    +      -       -      +
    294A  PHE*     2.9    51.8    +      -       +      +
    296A  VAL*     1.3    79.9    -      -       -      +
    298A  ASN*     1.3    63.6    +      -       -      +
    300A  TRP*     3.4     6.0    +      -       -      +
    301A  THR*     2.9    24.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 298 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    275A  TRP*     3.1    49.5    -      -       -      +
    276A  GLN*     3.4    13.5    +      -       -      +
    279A  ILE*     3.4    31.4    -      -       +      +
    294A  PHE*     3.0    10.0    +      -       +      +
    295A  GLY      3.8     0.2    -      -       -      +
    297A  MET*     1.3    81.7    -      -       -      +
    299A  VAL*     1.3    65.1    +      -       -      +
    301A  THR*     2.9    26.2    +      -       -      -
    302A  LEU*     3.0    32.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 299 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    220A  LEU*     3.5    41.1    -      -       +      +
    223A  ILE*     4.2     6.1    -      -       +      -
    224A  ALA*     5.4     3.4    -      -       +      -
    227A  GLU*     3.0    39.7    -      -       -      +
    276A  GLN*     6.2     0.2    -      -       +      -
    279A  ILE*     6.3     1.1    -      -       +      -
    295A  GLY      3.2     2.8    +      -       -      +
    296A  VAL*     3.1    10.2    +      -       +      +
    298A  ASN*     1.3    80.3    -      -       +      +
    300A  TRP*     1.3    65.8    +      -       +      +
    302A  LEU*     3.3    10.0    +      -       +      +
    303A  LEU*     3.1    37.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 300 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  TYR*     4.8    13.9    +      -       -      -
    136A  LEU*     4.6    19.7    -      -       +      -
    140A  GLY*     6.2     1.3    -      -       -      -
    248A  LEU      4.5     0.4    -      -       -      -
    249A  PHE*     2.8    92.1    -      +       +      -
    252A  PRO*     4.4     4.7    -      -       +      -
    253A  ILE*     3.8    27.6    -      -       +      -
    296A  VAL      3.2     5.4    +      -       -      +
    297A  MET      3.8     6.1    -      -       -      +
    299A  VAL*     1.3    78.5    -      -       +      +
    301A  THR*     1.3    75.2    +      -       -      +
    303A  LEU*     3.2    16.3    +      -       +      +
    304A  VAL*     3.1    44.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with THR 301 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    252A  PRO*     3.1    43.1    -      -       +      +
    255A  ALA*     5.9     2.5    -      -       +      -
    256A  ALA*     6.4     0.2    -      -       -      -
    268A  LYS*     6.5     0.4    -      -       +      -
    271A  SER*     5.5     3.8    -      -       -      +
    275A  TRP*     5.0    10.5    -      -       +      +
    297A  MET*     2.9    17.1    +      -       -      +
    298A  ASN*     2.9    22.1    +      -       -      +
    300A  TRP*     1.3    82.5    -      -       -      +
    302A  LEU*     1.3    59.9    +      -       +      +
    304A  VAL*     3.7     0.2    -      -       -      -
    305A  PRO*     2.6    40.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 302 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    216A  LEU*     4.2    10.8    -      -       +      -
    220A  LEU*     3.9    22.2    -      -       +      -
    268A  LYS*     3.8     3.8    -      -       +      +
    271A  SER*     4.8     2.2    -      -       -      +
    272A  THR*     3.3    39.9    -      -       +      +
    275A  TRP*     4.3     4.7    -      -       +      -
    276A  GLN*     3.1    29.2    -      -       +      +
    298A  ASN*     3.0    45.8    -      -       -      +
    299A  VAL*     3.5     3.1    -      -       -      +
    301A  THR*     1.3    75.9    -      -       +      +
    303A  LEU*     1.3    64.7    +      -       -      +
    305A  PRO*     3.8     5.0    -      -       -      +
    306A  ALA*     3.0    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 303 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  TYR*     4.4    25.6    -      -       +      +
     53A  LEU*     6.3     3.1    -      -       +      -
    213A  LEU*     5.6     0.8    -      -       -      +
    216A  LEU*     4.5     1.3    -      -       +      -
    217A  ILE*     3.9    21.8    -      -       +      -
    220A  LEU*     3.4    25.1    -      -       +      -
    299A  VAL*     3.1    29.3    +      -       +      +
    300A  TRP*     3.2    22.6    +      -       +      +
    302A  LEU*     1.3    79.4    -      -       -      +
    304A  VAL*     1.3    60.2    +      -       +      +
    306A  ALA*     3.5     4.6    -      -       -      +
    307A  ALA*     3.0    31.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 304 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    118A  ARG*     6.1     2.2    -      -       -      +
    132A  HIS*     5.0     6.4    -      -       +      -
    136A  LEU*     3.6    14.4    -      -       +      -
    253A  ILE*     3.6    29.2    -      -       +      -
    256A  ALA*     3.9     5.4    -      -       +      -
    300A  TRP*     3.1    50.2    +      -       +      +
    301A  THR      3.0     5.5    +      -       -      +
    303A  LEU*     1.3    72.8    -      -       +      +
    305A  PRO*     1.4    77.2    -      -       +      +
    306A  ALA      3.0     1.4    +      -       -      -
    307A  ALA*     3.0     6.9    +      -       -      +
    308A  LEU*     2.9    21.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 305 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    256A  ALA*     3.5    26.7    -      -       +      -
    259A  GLY*     4.1    23.3    -      -       -      +
    260A  ALA*     4.5     0.4    -      -       -      +
    263A  ALA*     4.6     2.4    -      -       -      +
    268A  LYS*     3.0    28.2    +      -       +      +
    301A  THR*     2.6    35.2    -      -       +      +
    302A  LEU      3.8     2.2    -      -       -      +
    304A  VAL*     1.4    83.1    -      -       +      +
    306A  ALA*     1.3    62.6    +      -       -      +
    308A  LEU*     3.0    23.5    +      -       +      +
    309A  PHE*     3.2     9.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 306 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    213A  LEU*     3.5    38.4    -      -       +      -
    216A  LEU*     5.5     0.4    -      -       +      -
    268A  LYS*     2.8    17.4    -      -       -      +
    272A  THR*     6.1     0.2    -      -       +      -
    302A  LEU*     3.0    19.4    +      -       +      +
    303A  LEU      3.5     4.3    -      -       -      +
    304A  VAL      3.0     0.6    +      -       -      -
    305A  PRO*     1.3    74.5    -      -       -      +
    307A  ALA*     1.3    58.5    +      -       -      +
    308A  LEU      3.0     5.5    +      -       -      -
    309A  PHE*     3.0    18.2    -      -       -      -
    310A  PHE*     3.0    20.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 307 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56A  TYR*     4.9    11.9    -      -       -      +
    118A  ARG*     4.9    15.2    +      -       -      +
    132A  HIS*     5.4     2.3    +      -       -      -
    213A  LEU*     5.6     0.2    -      -       -      +
    303A  LEU      3.0    19.6    +      -       -      +
    304A  VAL*     3.0     5.1    +      -       -      +
    306A  ALA*     1.3    75.3    -      -       -      +
    308A  LEU*     1.3    56.8    +      -       -      +
    310A  PHE*     3.9     9.6    -      -       -      -
    311A  PHE*     2.9    32.0    +      -       -      +
    327A  PRO*     6.4     0.4    -      -       -      -
    331A  LEU*     6.5     1.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 308 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122A  ARG*     3.2    33.0    +      -       -      +
    131A  ARG*     4.2     6.3    -      -       +      +
    132A  HIS*     3.6    39.5    -      -       +      +
    253A  ILE*     6.0     0.7    -      -       +      -
    256A  ALA*     3.7    17.9    -      -       +      +
    257A  PHE*     5.1     2.7    -      -       -      +
    260A  ALA*     3.3    32.1    -      -       +      -
    304A  VAL*     2.9    11.7    +      -       +      +
    305A  PRO*     3.1    14.8    -      -       +      +
    306A  ALA      3.0     2.4    -      -       -      -
    307A  ALA*     1.3    74.6    -      -       -      +
    309A  PHE*     1.3    65.4    +      -       -      +
    310A  PHE      3.0     0.7    -      -       -      -
    311A  PHE*     3.0    14.1    +      -       +      +
    312A  GLY*     3.3     9.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 309 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209A  PHE*     4.0    23.3    -      +       -      -
    212A  TYR*     3.5    37.7    -      +       -      -
    260A  ALA*     5.2     3.5    -      -       +      +
    263A  ALA*     4.0    27.1    -      -       +      +
    268A  LYS*     4.3     2.9    -      -       +      -
    305A  PRO      3.2    11.8    +      -       -      -
    306A  ALA*     3.0    34.5    -      -       +      -
    308A  LEU*     1.3    79.3    -      -       -      +
    310A  PHE*     1.3    85.7    +      +       -      +
    312A  GLY*     5.6     0.2    -      -       -      -
    313A  ALA*     3.1    35.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 310 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209A  PHE*     4.2    24.9    -      +       +      -
    210A  ASN*     5.7     1.3    -      -       -      -
    213A  LEU*     3.3    44.2    -      -       +      -
    306A  ALA      3.0    18.9    +      -       -      +
    307A  ALA*     3.9     9.0    -      -       -      -
    309A  PHE*     1.3    99.2    -      +       -      +
    311A  PHE*     1.3    60.5    +      -       -      +
    314A  GLY*     2.8    34.6    +      -       -      +
    315A  MET*     3.7     2.3    +      -       -      +
    326A  GLU*     3.6    26.9    -      -       +      -
    327A  PRO*     3.8    29.7    -      -       +      +
    331A  LEU*     4.0    16.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 311 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  GLN*     3.7    22.2    -      -       -      -
    118A  ARG*     4.0    27.6    -      -       +      -
    119A  THR*     4.6    17.5    -      -       +      -
    122A  ARG*     4.0    36.8    -      -       +      -
    132A  HIS*     4.1     9.2    -      +       +      -
    307A  ALA*     2.9    24.0    +      -       +      +
    308A  LEU*     3.0     8.7    +      -       +      +
    310A  PHE*     1.3    74.6    -      -       -      +
    312A  GLY*     1.3    59.1    +      -       -      +
    315A  MET*     3.0    65.3    +      -       -      +
    316A  LEU*     5.6     0.5    -      -       -      +
    327A  PRO*     6.3     0.4    -      -       -      -
    328A  PHE*     4.9     4.5    -      +       -      -
----------------------------------------------------------
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Residues in contact with GLY 312 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122A  ARG*     4.9    13.8    -      -       -      +
    308A  LEU      3.3     8.4    +      -       -      -
    309A  PHE*     4.1     0.9    -      -       -      -
    311A  PHE*     1.3    80.8    -      -       -      +
    313A  ALA*     1.3    59.1    +      -       -      +
    314A  GLY      2.8    10.7    +      -       -      -
    316A  LEU*     3.3    33.0    +      -       -      +
    317A  PHE*     5.3     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 313 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    309A  PHE*     3.1    22.6    +      -       +      +
    310A  PHE*     5.4     0.7    -      -       -      -
    312A  GLY*     1.3    71.2    -      -       -      +
    314A  GLY*     1.3    56.8    +      -       -      +
    317A  PHE*     3.2    33.9    -      -       +      -
    319A  LEU*     5.4     3.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 314 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    310A  PHE*     2.8    23.4    +      -       -      +
    312A  GLY      2.8     0.8    +      -       -      -
    313A  ALA*     1.3    79.7    -      -       -      +
    315A  MET*     1.3    57.4    +      -       -      -
    316A  LEU      3.2     2.9    +      -       -      -
    317A  PHE      3.7     5.2    +      -       -      -
    319A  LEU*     2.5    32.1    -      -       -      +
    323A  GLY*     4.6     4.3    -      -       -      -
    326A  GLU*     4.9    16.2    -      -       -      -
    327A  PRO*     5.8     2.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with MET 315 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  GLN*     5.0     4.7    -      -       -      +
    310A  PHE      3.7     0.9    +      -       -      +
    311A  PHE*     3.0    54.3    +      -       +      +
    314A  GLY*     1.3    73.3    -      -       -      +
    316A  LEU*     1.3    63.7    +      -       +      +
    317A  PHE      3.6     0.4    -      -       -      -
    319A  LEU      3.9     4.5    -      -       -      -
    320A  ALA*     3.4    32.5    -      -       +      +
    323A  GLY*     5.0     2.5    -      -       -      +
    324A  ALA*     5.1    10.3    -      -       +      +
    327A  PRO*     5.4     3.6    -      -       +      -
    328A  PHE*     3.8    32.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 316 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    311A  PHE      5.6     0.2    -      -       -      +
    312A  GLY*     3.3    22.5    +      -       -      +
    314A  GLY      3.2     0.6    +      -       -      -
    315A  MET*     1.3    80.9    -      -       +      +
    317A  PHE*     1.3    68.5    +      -       +      +
    320A  ALA*     5.1     0.4    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il