Contacts of the helix formed by residues 76 - 127 (chain B) in PDB entry 2GFP
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 76 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B LEU* 4.9 8.7 - - + -
63B TYR* 3.9 33.7 - - + +
66B ILE* 5.4 6.7 - - + -
71B GLY 3.0 17.5 + - - +
72B ARG* 2.8 27.9 + - + +
75B VAL* 1.3 84.6 - - + +
77B LEU* 1.3 68.0 + - + +
80B MET* 3.2 48.0 + - + +
109B GLY 5.4 1.1 - - - +
110B THR* 6.0 2.0 - - + -
112B VAL* 5.3 3.4 - - + -
113B GLY* 4.9 19.3 - - - +
169B LEU* 5.0 0.6 - - - +
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Residues in contact with LEU 77 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B LEU* 3.9 28.3 - - + -
72B ARG* 3.1 38.4 + - + +
73B ARG* 2.9 36.1 - - + +
76B ILE* 1.3 78.4 - - + +
78B VAL* 1.3 71.1 + - + +
81B SER* 2.7 37.8 + - - -
169B LEU* 3.3 36.2 - - + +
172B CYS* 5.3 0.7 - - - -
173B ALA* 3.6 33.4 - - + +
176B THR* 5.3 3.6 - - - +
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Residues in contact with VAL 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B ARG* 2.9 39.6 + - - +
74B PRO* 3.0 16.2 - - + +
77B LEU* 1.3 80.7 - - + +
79B GLY* 1.3 62.6 + - - +
81B SER* 2.7 20.0 + - - +
82B ILE* 3.1 17.0 + - + +
169B LEU* 5.1 0.4 - - - -
173B ALA* 5.6 2.2 - - + -
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Residues in contact with GLY 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74B PRO 2.8 12.0 + - - -
75B VAL* 3.1 13.9 + - - -
78B VAL* 1.3 76.3 - - - +
80B MET* 1.3 63.8 + - - +
82B ILE* 3.0 27.9 - - - +
83B PHE* 3.2 23.3 - - - -
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Residues in contact with MET 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B VAL* 3.4 5.6 + - + +
76B ILE* 3.2 49.0 + - + +
79B GLY* 1.3 72.7 - - - +
81B SER* 1.3 61.6 + - - +
83B PHE* 3.4 15.7 - - + +
84B MET* 3.2 18.2 + - - +
105B MET* 6.2 0.7 - - - -
106B GLN* 3.4 29.5 - - - +
109B GLY* 3.5 44.0 - - - +
110B THR* 4.1 2.2 - - - -
112B VAL* 5.1 5.6 - - + -
165B TYR* 3.1 19.7 + - - +
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Residues in contact with SER 81 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B LEU 2.7 23.7 + - - -
78B VAL* 2.7 18.0 + - - -
80B MET* 1.3 74.7 - - - +
82B ILE* 1.3 58.4 + - - +
84B MET* 2.7 35.2 + - - +
85B LEU* 3.2 5.6 - - - +
165B TYR* 3.6 14.7 + - - -
166B LEU* 3.7 18.1 - - - +
169B LEU* 3.6 19.2 - - - +
170B VAL* 5.1 3.3 - - - +
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Residues in contact with ILE 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78B VAL* 3.1 15.2 + - + +
79B GLY* 3.0 22.4 - - - +
81B SER* 1.3 80.3 + - - +
83B PHE* 1.3 75.0 + - + +
85B LEU* 2.8 46.7 + - + +
86B ALA* 3.6 2.4 + - - +
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Residues in contact with PHE 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B VAL* 5.7 1.6 - - + -
79B GLY* 3.2 27.1 - - - -
80B MET* 3.4 22.4 - - + +
81B SER 3.1 0.4 - - - -
82B ILE* 1.3 87.9 - - + +
84B MET* 1.3 57.1 + - - +
86B ALA* 2.9 31.1 + - - +
87B THR* 3.2 4.0 + - - -
106B GLN* 4.8 18.8 - - + -
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Residues in contact with MET 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23B ALA* 6.1 0.2 - - + -
80B MET 3.2 12.2 + - - +
81B SER* 2.7 24.6 + - - +
83B PHE* 1.3 69.3 - - - +
85B LEU* 1.3 59.1 + - + +
86B ALA 3.2 0.2 - - - -
87B THR* 2.6 35.9 + - + +
106B GLN* 5.8 5.6 - - + +
161B TRP* 3.4 26.7 - - + +
162B ARG* 2.7 35.9 + - - +
165B TYR* 3.0 57.0 - - + -
166B LEU* 3.5 22.0 - - + -
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Residues in contact with LEU 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81B SER 3.2 17.0 - - - +
82B ILE* 2.8 28.4 + - + +
84B MET* 1.3 73.4 - - - +
86B ALA* 1.3 66.5 + - - +
87B THR* 2.8 7.6 + - - -
88B LEU 4.0 2.1 + - - -
89B VAL* 3.7 12.5 + - - +
162B ARG* 3.1 24.0 + - - +
166B LEU* 3.7 20.4 - - + -
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Residues in contact with ALA 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B ILE 3.6 2.5 + - - +
83B PHE* 2.9 17.2 + - - +
85B LEU* 1.3 78.6 - - - +
87B THR* 1.3 65.1 - - - +
89B VAL* 3.2 9.1 - - - +
90B ALA* 3.1 30.4 + - + +
91B VAL* 4.9 0.7 - - - -
99B LEU* 5.8 2.0 - - + -
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Residues in contact with THR 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B PHE 3.2 5.1 + - - -
84B MET* 2.6 32.3 + - + +
85B LEU 2.8 1.2 - - - -
86B ALA* 1.3 82.6 - - - +
88B LEU* 1.3 77.5 + - - +
91B VAL* 2.7 27.9 + - + +
99B LEU* 5.7 0.2 - - - -
103B SER* 3.8 22.7 + - - -
106B GLN* 5.9 2.9 - - - +
161B TRP* 3.0 38.6 - - + +
162B ARG* 3.6 4.7 - - - +
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Residues in contact with LEU 88 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B MET* 5.7 5.6 - - + -
84B MET 4.1 0.2 + - - -
85B LEU 4.0 3.6 + - - -
86B ALA 4.0 0.4 - - - -
87B THR* 1.3 81.5 - - - +
89B VAL* 1.3 66.5 + - + +
91B VAL* 3.4 9.0 - - + +
92B THR* 2.9 39.7 + - - +
158B MET* 3.5 44.2 - - + -
159B TRP 5.3 0.2 - - - +
161B TRP* 3.5 28.3 - - + -
162B ARG* 4.4 12.2 - - + +
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Residues in contact with VAL 89 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B LEU 3.7 13.2 + - - +
86B ALA* 3.2 16.4 - - - +
87B THR 3.0 0.4 + - - -
88B LEU* 1.3 79.8 - - + +
90B ALA* 1.3 69.3 + - + +
92B THR* 3.2 13.7 + - - -
93B THR* 4.0 5.9 + - - -
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Residues in contact with ALA 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B ALA* 3.1 20.0 + - + +
89B VAL* 1.3 80.8 - - + +
91B VAL* 1.3 57.6 + - - +
92B THR 2.9 0.9 + - - -
93B THR* 4.6 1.3 - - - +
94B SER* 2.8 40.4 + - - +
99B LEU* 3.8 20.4 - - + -
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Residues in contact with VAL 91 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B MET* 5.0 3.6 - - - +
87B THR* 2.7 51.5 + - - +
88B LEU* 3.4 19.5 - - + +
89B VAL 3.2 0.2 - - - -
90B ALA* 1.3 70.8 - - - +
92B THR* 1.3 51.8 + - - -
95B SER* 2.6 28.0 + - - -
99B LEU* 3.3 33.9 - - + +
100B ILE* 5.6 0.7 - - - -
102B ALA* 5.5 0.2 - - + -
103B SER* 2.8 30.3 - - - +
161B TRP* 4.2 10.8 - - + -
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Residues in contact with THR 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B MET* 5.3 11.2 - - + +
88B LEU* 2.9 33.3 + - - +
89B VAL* 3.2 9.4 + - - -
90B ALA 2.9 1.6 + - - -
91B VAL* 1.3 77.4 - - - +
93B THR* 1.3 69.2 + - - +
95B SER* 2.7 26.4 + - - -
96B LEU* 3.8 1.6 + - - +
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Residues in contact with THR 93 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B VAL 4.0 4.3 + - - -
90B ALA* 3.7 2.8 + - - -
92B THR* 1.3 83.8 - - - +
94B SER* 1.3 65.8 + - - +
95B SER 3.2 0.2 + - - -
96B LEU* 3.4 26.2 - - + +
97B THR* 4.2 2.0 + - - -
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Residues in contact with SER 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B ALA* 2.8 25.3 + - - +
93B THR* 1.3 74.9 - - - +
95B SER* 1.3 67.7 + - - +
96B LEU 3.0 2.9 - - - -
97B THR* 2.4 46.2 + - - +
99B LEU* 2.8 30.0 - - - +
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Residues in contact with SER 95 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B MET* 3.4 28.7 + - - +
38B LEU* 5.6 0.3 - - - +
91B VAL* 2.6 33.0 + - - +
92B THR* 2.7 18.3 + - - -
94B SER* 1.3 76.2 - - - +
96B LEU* 1.3 68.2 + - - +
99B LEU 4.3 0.2 - - - -
100B ILE* 2.6 41.5 + - - +
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Residues in contact with LEU 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38B LEU* 3.8 32.3 - - + +
39B ASN* 4.5 18.6 - - + +
92B THR 3.8 1.5 + - - +
93B THR* 3.4 18.3 + - + +
94B SER 3.0 0.2 - - - -
95B SER* 1.3 87.3 + - - +
97B THR* 1.3 75.3 + - - +
98B VAL 2.6 17.8 + - - -
100B ILE* 2.8 11.1 - - - +
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Residues in contact with THR 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93B THR 4.2 1.4 + - - -
94B SER* 2.4 32.5 + - - +
96B LEU* 1.3 88.7 - - - +
98B VAL* 1.3 60.2 - - + +
99B LEU* 2.2 30.1 + - + +
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Residues in contact with VAL 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96B LEU 2.6 10.8 + - - -
97B THR* 1.3 81.0 - - + +
99B LEU* 1.3 65.8 + - + +
100B ILE* 3.6 9.6 - - - +
101B ALA* 2.8 36.4 - - + +
102B ALA* 3.1 7.6 + - - +
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Residues in contact with LEU 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B ALA* 5.4 2.7 - - + +
87B THR* 5.7 0.4 - - - -
90B ALA* 3.7 18.8 - - + +
91B VAL* 3.3 30.0 - - + +
94B SER* 2.8 39.9 - - - +
95B SER* 4.3 1.6 - - - -
97B THR* 2.2 27.7 + - + +
98B VAL* 1.3 76.4 - - + +
100B ILE* 1.3 67.3 + - - +
101B ALA 2.7 0.4 - - - -
102B ALA* 3.8 20.0 - - + +
103B SER* 2.8 30.0 + - - -
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Residues in contact with ILE 100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31B ILE* 4.0 17.1 - - + +
34B MET* 4.2 14.6 - - + -
35B ALA* 4.5 5.6 - - + +
38B LEU* 3.3 27.4 - - + -
40B VAL* 6.4 0.7 - - + -
44B ALA* 5.9 4.3 - - + -
48B VAL* 5.8 5.1 - - + +
91B VAL* 5.6 0.7 - - - -
95B SER* 2.6 47.0 + - - +
96B LEU 2.8 30.1 - - - +
98B VAL* 3.6 10.5 - - - +
99B LEU* 1.3 78.1 - - - +
101B ALA* 1.3 74.4 + - + +
103B SER* 4.0 4.4 - - - -
104B ALA* 3.3 21.5 + - - +
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Residues in contact with ALA 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B VAL* 2.8 39.2 + - + +
99B LEU 2.7 0.8 - - - -
100B ILE* 1.3 91.1 - - + +
102B ALA* 1.3 61.7 + - - +
104B ALA* 3.8 3.6 - - - +
105B MET* 3.2 20.7 + - - +
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Residues in contact with ALA 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B VAL 3.1 7.2 + - - +
99B LEU* 3.4 26.4 + - + -
101B ALA* 1.3 78.3 - - - +
103B SER* 1.3 63.3 + - - +
105B MET* 3.4 5.7 + - - +
106B GLN* 3.1 34.3 + - + +
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Residues in contact with SER 103 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B TYR* 4.8 3.2 - - - +
31B ILE* 6.1 0.7 - - - -
87B THR* 3.8 13.8 + - - -
91B VAL* 2.8 38.6 - - - +
99B LEU 2.8 10.5 + - - -
100B ILE* 4.0 4.9 - - - -
102B ALA* 1.3 79.7 - - - +
104B ALA* 1.3 66.1 + - - +
106B GLN* 3.2 4.5 + - - +
107B GLY* 3.2 15.2 + - - -
161B TRP* 6.2 1.8 - - - -
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Residues in contact with ALA 104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B TYR* 3.1 45.3 - - + +
31B ILE* 3.5 32.9 - - + +
48B VAL* 4.1 14.8 - - + -
51B ALA* 5.6 5.4 - - + -
100B ILE 3.3 10.1 + - - +
101B ALA* 3.8 3.8 - - - +
103B SER* 1.3 78.5 - - - +
105B MET* 1.3 64.0 + - - +
107B GLY 3.1 1.0 + - - -
108B MET* 4.4 0.2 - - - +
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Residues in contact with MET 105 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51B ALA* 5.3 7.7 - - + +
54B LEU* 4.4 22.0 - - + -
55B THR* 3.1 37.0 - - + +
58B VAL* 6.3 2.0 - - + -
80B MET* 6.2 0.2 - - - -
101B ALA 3.2 10.2 + - - +
102B ALA* 3.6 9.2 - - - +
103B SER 3.3 0.2 - - - -
104B ALA* 1.3 78.8 - - - +
106B GLN* 1.3 86.2 + - - +
108B MET* 3.0 8.2 + - - +
109B GLY* 3.0 18.1 + - - -
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Residues in contact with GLN 106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80B MET* 3.4 41.2 - - - +
83B PHE* 4.8 23.3 - - + -
84B MET* 5.8 5.2 - - + +
87B THR* 5.9 2.9 - - - +
102B ALA* 3.1 27.2 + - + +
103B SER* 3.2 5.8 + - - +
105B MET* 1.3 100.9 - - - +
107B GLY* 1.3 64.3 - - - +
109B GLY* 2.8 13.9 + - - +
110B THR* 3.2 9.0 + - - -
165B TYR* 4.0 11.7 + - + +
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Residues in contact with GLY 107 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B GLY 3.5 8.5 - - - +
23B ALA* 3.6 25.1 - - - -
24B GLN 4.1 3.6 - - - -
27B TYR* 3.6 17.7 - - - -
103B SER 3.2 7.1 + - - -
104B ALA 3.1 4.9 + - - -
106B GLN* 1.3 77.3 - - - +
108B MET* 1.3 61.6 + - - +
109B GLY 3.0 1.4 + - - -
110B THR* 3.1 14.8 + - - -
111B GLY 3.4 4.9 + - - -
165B TYR* 4.7 1.1 - - - -
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Residues in contact with MET 108 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24B GLN* 3.3 39.0 - - - +
27B TYR* 3.1 25.9 - - + +
52B TYR* 4.1 27.4 - - + +
55B THR* 3.7 27.1 - - + +
56B TYR* 4.5 24.0 - - + -
104B ALA 4.4 0.9 - - - +
105B MET* 3.0 9.8 + - - +
107B GLY* 1.3 74.8 - - - +
109B GLY* 1.3 57.6 + - - +
111B GLY* 2.9 30.1 + - - +
112B VAL* 3.0 14.6 + - - +
115B VAL* 5.8 0.4 - - + -
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Residues in contact with GLY 109 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B THR* 4.1 3.8 - - - -
76B ILE* 5.4 1.0 - - - +
80B MET* 3.5 26.8 - - - +
105B MET* 3.0 10.3 + - - -
106B GLN* 2.8 12.6 + - - -
108B MET* 1.3 74.3 - - - +
110B THR* 1.3 60.4 + - - +
111B GLY 2.9 0.9 - - - -
112B VAL* 2.7 36.5 + - - +
113B GLY 3.5 1.7 + - - -
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Residues in contact with THR 110 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B LEU* 3.7 19.5 - - + +
17B VAL* 5.3 1.0 - - - -
19B VAL* 3.5 25.1 + - + -
20B GLY* 3.2 25.1 + - - +
76B ILE* 6.0 2.7 - - + -
80B MET* 4.1 3.2 - - - -
106B GLN 3.2 1.8 + - - -
107B GLY* 3.1 8.2 + - - -
109B GLY* 1.3 73.8 - - - +
111B GLY* 1.3 56.5 + - - +
113B GLY* 2.8 23.4 + - - +
114B GLY 3.3 3.3 + - - -
165B TYR* 2.9 28.9 - - - +
169B LEU* 3.7 22.2 - - + -
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Residues in contact with GLY 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B GLY* 4.1 5.8 - - - -
24B GLN* 4.3 11.7 - - - -
107B GLY 3.4 3.0 + - - -
108B MET* 2.9 34.8 + - - +
110B THR* 1.3 81.6 - - - +
112B VAL* 1.3 51.7 + - - +
114B GLY* 2.7 27.1 + - - -
115B VAL* 3.2 6.8 + - - +
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Residues in contact with VAL 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B THR* 3.7 8.5 - - + -
56B TYR* 5.4 0.9 - - - +
59B SER* 3.0 31.0 - - - +
63B TYR* 3.4 43.2 - - + -
76B ILE* 5.3 3.8 - - + -
80B MET* 5.1 6.7 - - + -
108B MET* 3.0 11.6 + - + +
109B GLY* 2.7 24.5 + - - +
111B GLY* 1.3 72.4 - - - +
113B GLY* 1.3 60.5 + - - +
115B VAL* 2.8 35.1 + - + +
116B MET 3.5 2.6 + - - -
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Residues in contact with GLY 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B LEU* 5.7 0.5 - - - +
16B LEU* 4.4 19.9 - - - +
17B VAL* 5.0 3.3 - - - +
63B TYR* 4.6 7.4 - - - -
76B ILE* 4.9 12.5 - - - +
109B GLY 3.5 2.4 + - - -
110B THR 2.8 11.9 + - - -
112B VAL* 1.3 77.6 - - - +
114B GLY* 1.3 62.2 + - - +
116B MET* 3.2 8.2 + - - +
117B ALA* 3.2 17.4 + - - +
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Residues in contact with GLY 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17B VAL* 4.1 8.4 - - - +
110B THR 3.3 6.4 + - - -
111B GLY* 2.7 13.8 + - - -
113B GLY* 1.3 77.2 - - - +
115B VAL* 1.3 61.9 + - - +
117B ALA* 2.9 24.9 - - - +
118B ARG* 3.2 5.9 + - - +
139B MET* 3.7 26.2 - - - +
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Residues in contact with VAL 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56B TYR* 3.9 31.0 - - + -
59B SER* 4.8 4.3 - - - -
60B GLN* 3.4 39.9 - - + +
63B TYR* 4.2 13.0 - - + -
108B MET* 5.8 0.7 - - + -
111B GLY 3.2 4.8 + - - +
112B VAL* 2.8 36.7 + - + +
114B GLY* 1.3 69.4 - - - +
116B MET* 1.3 64.8 + - + +
117B ALA 3.0 0.3 + - - -
118B ARG* 3.0 33.1 - - - +
119B THR* 3.4 5.2 + - - +
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Residues in contact with MET 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B LEU* 5.3 0.9 - - - -
63B TYR* 3.2 22.9 + - - +
67B SER* 3.0 40.2 - - - +
72B ARG* 4.9 16.2 - - - +
112B VAL 3.5 1.4 + - - -
113B GLY* 3.2 9.0 + - - +
115B VAL* 1.3 80.5 - - + +
117B ALA* 1.3 63.8 + - - +
119B THR* 3.0 54.8 + - + +
120B LEU* 3.4 12.8 + - + +
183B MET* 4.2 21.1 - - + -
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Residues in contact with ALA 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B LEU* 3.7 29.6 - - + +
17B VAL* 3.9 14.8 - - + -
113B GLY 3.2 7.0 + - - +
114B GLY* 2.9 25.3 + - - +
116B MET* 1.3 76.6 - - - +
118B ARG* 1.3 53.4 + - - +
121B PRO* 2.6 37.1 - - - +
135B SER* 3.6 11.4 - - - +
138B ASN* 5.3 0.2 - - - +
139B MET* 4.1 2.7 - - + -
----------------------------------------------------------
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Residues in contact with ARG 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56B TYR* 2.8 43.9 + - - -
60B GLN* 3.4 16.4 + - - +
114B GLY 3.2 4.6 + - - +
115B VAL* 3.0 29.5 + - - +
117B ALA* 1.3 78.8 - - - +
119B THR* 1.3 68.6 + - - +
121B PRO* 3.8 1.7 - - - +
122B ARG* 3.2 24.2 + - - +
132B HIS* 3.7 36.4 + - + +
135B SER* 3.8 16.0 + - - +
136B LEU* 4.9 17.7 - - + +
139B MET* 4.6 5.6 - - + +
304B VAL* 6.1 2.4 - - - +
307B ALA* 4.9 15.6 + - - +
311B PHE* 4.0 20.5 - - + -
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Residues in contact with THR 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60B GLN* 6.0 0.3 + - - -
115B VAL* 3.4 12.8 + - - +
116B MET* 3.0 38.7 + - + +
118B ARG* 1.3 80.8 - - - +
120B LEU* 1.3 70.0 + - + +
122B ARG* 2.8 25.4 + - + +
123B ASP* 3.5 6.5 + - - +
183B MET* 4.5 15.0 - - + -
311B PHE* 4.6 15.6 - - + -
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Residues in contact with LEU 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9B LEU* 6.5 1.3 - - + -
13B LEU* 5.7 7.0 - - + -
72B ARG* 5.3 13.0 - - - +
116B MET* 3.4 11.0 + - + +
119B THR* 1.3 83.5 - - + +
121B PRO* 1.3 66.3 - - + +
123B ASP* 2.6 53.1 + - + +
124B LEU* 3.4 1.7 + - - +
181B ARG 5.6 4.9 - - - +
182B TRP* 5.7 15.9 - - + -
183B MET* 5.1 19.1 - - + -
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Residues in contact with PRO 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13B LEU* 3.5 28.3 - - + -
117B ALA* 2.6 30.7 - - - +
118B ARG 4.1 1.8 - - - +
120B LEU* 1.3 87.5 - - + +
122B ARG* 1.3 56.7 + - - +
124B LEU* 2.9 35.3 + - + +
125B TYR* 3.0 5.0 + - - +
134B ASN* 3.9 17.9 + - - +
135B SER* 3.8 24.7 - - - +
----------------------------------------------------------
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Residues in contact with ARG 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ARG 3.2 16.5 + - - +
119B THR* 2.8 15.4 + - - +
121B PRO* 1.3 73.9 - - - +
123B ASP* 1.3 61.9 + - - +
125B TYR* 2.8 65.5 + - + +
126B GLU* 3.2 1.7 + - - +
131B ARG* 3.1 25.2 + - - +
132B HIS* 3.2 23.9 + - + +
134B ASN* 5.6 0.7 - - - +
308B LEU* 3.2 28.3 + - - +
311B PHE* 4.0 26.0 - - + -
312B GLY* 4.9 12.1 - - - +
----------------------------------------------------------
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Residues in contact with ASP 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B THR* 4.2 6.8 - - - +
120B LEU* 2.6 38.4 + - + +
122B ARG* 1.3 72.6 - - - +
124B LEU* 1.3 54.9 + - - +
126B GLU* 2.8 35.4 + - - +
127B ARG* 3.5 3.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B LEU 3.4 2.2 + - - +
121B PRO* 2.9 24.8 + - + +
123B ASP* 1.3 79.4 - - - +
125B TYR* 1.3 60.5 + - - +
127B ARG* 3.0 46.6 - - + +
128B THR 3.9 0.2 + - - -
130B LEU* 3.5 24.0 - - + +
134B ASN* 5.2 6.7 - - + +
----------------------------------------------------------
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Residues in contact with TYR 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B PRO 3.0 5.5 + - - +
122B ARG* 2.8 58.9 + - - +
124B LEU* 1.3 72.7 - - - +
126B GLU* 1.3 66.7 + - + +
127B ARG 2.8 10.9 + - - -
128B THR 2.9 23.4 + - - +
130B LEU* 2.7 45.5 - - + +
131B ARG* 3.8 29.4 + - - +
134B ASN* 5.6 1.8 - - - +
----------------------------------------------------------
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Residues in contact with GLU 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B ARG 3.2 2.6 + - - +
123B ASP* 2.8 21.0 + - - +
125B TYR* 1.3 90.2 - - + +
127B ARG* 1.3 59.4 + - - +
128B THR* 3.4 2.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B ASP 3.5 3.2 + - - +
124B LEU* 3.0 39.3 + - + +
125B TYR 2.8 2.2 + - - -
126B GLU* 1.3 80.1 - - - +
128B THR* 1.3 70.5 + - - +
130B LEU* 5.7 0.4 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il