Contacts of the helix formed by residues 82 - 111 (chain A) in PDB entry 2HTN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 82 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A TRP* 4.2 4.9 - - - -
80A GLY 3.4 1.6 + - - -
81A GLU* 1.3 80.6 - - - +
83A VAL* 1.3 65.1 + - - +
84A GLU* 3.3 9.1 + - - +
85A GLU* 2.7 52.7 + - - +
86A MET* 2.9 27.9 + - - +
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Residues in contact with VAL 83 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A PHE* 4.1 7.6 - - + -
35A TRP* 4.2 8.4 - - + -
37A LEU* 3.9 18.8 - - + -
40A LEU* 4.0 16.2 - - + -
82A ASP* 1.3 73.2 - - - +
84A GLU* 1.3 63.8 + - - +
86A MET* 3.2 9.0 + - - +
87A LEU* 3.0 45.6 + - + +
141A ILE* 4.5 3.4 - - + -
146A LEU* 4.9 6.3 - - + -
149A TYR* 4.2 17.9 - - + -
150A LEU* 3.8 26.2 - - + -
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Residues in contact with GLU 84 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A ASP* 3.3 6.9 + - - +
83A VAL* 1.3 79.6 - - - +
85A GLU* 1.3 58.5 + - - +
87A LEU* 3.3 1.2 + - - +
88A ARG* 2.7 75.0 + - - +
138A LEU* 3.5 22.4 - - + +
141A ILE* 3.9 32.6 - - + +
142A GLN* 5.6 2.8 + - - +
146A LEU* 5.5 3.9 - - + +
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Residues in contact with GLU 85 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A ASN* 5.7 3.1 - - - +
80A GLY* 3.3 15.9 - - - -
81A GLU* 2.9 24.6 + - - +
82A ASP* 2.7 37.2 + - - +
84A GLU* 1.3 73.8 + - - +
86A MET* 1.3 58.2 + - - +
88A ARG* 3.3 8.7 + - - +
89A SER* 2.9 34.7 + - - +
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Residues in contact with MET 86 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A HIS* 3.5 42.3 - - + +
31A MET* 3.8 18.6 - - + -
32A PHE* 3.5 32.1 - - + -
35A TRP* 3.6 19.3 - - + -
79A ILE 3.5 14.1 - - - +
80A GLY 3.4 20.6 - - - +
82A ASP 2.9 29.3 + - - +
83A VAL 3.5 4.5 - - - +
85A GLU* 1.3 76.9 - - - +
87A LEU* 1.3 62.8 + - - +
89A SER* 3.1 3.5 + - - -
90A ASP* 3.0 29.5 + - - +
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Residues in contact with LEU 87 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A PHE* 3.7 26.9 - - + -
40A LEU* 5.1 4.5 - - + -
44A GLU* 6.0 1.3 - - - -
83A VAL* 3.0 32.5 + - + +
86A MET* 1.3 75.6 - - - +
88A ARG* 1.3 58.1 + - - +
90A ASP* 3.5 10.8 + - - +
91A LEU* 3.0 28.6 + - - +
133A TRP* 5.0 7.2 - - + -
134A LEU* 4.0 18.1 - - + +
137A GLU* 3.9 27.4 - - + -
138A LEU* 3.7 20.2 - - + +
141A ILE* 4.0 24.5 - - + -
149A TYR* 4.1 8.3 - - - +
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Residues in contact with ARG 88 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84A GLU* 2.7 67.9 + - - +
85A GLU* 3.6 7.4 - - + +
86A MET 3.2 0.2 - - - -
87A LEU* 1.3 74.7 - - - +
89A SER* 1.3 59.7 + - - +
91A LEU* 3.5 10.1 + - - +
92A ALA* 3.0 28.8 + - - +
138A LEU* 3.4 34.0 + - + +
142A GLN* 5.9 2.2 + - - +
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Residues in contact with SER 89 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A GLN* 3.3 8.5 + - - -
78A ASN* 3.0 50.9 + - - +
79A ILE 3.5 7.6 + - - -
85A GLU* 2.9 23.7 + - - +
86A MET 3.1 8.3 + - - -
88A ARG* 1.3 73.7 - - - +
90A ASP* 1.3 65.4 + - - +
92A ALA* 3.2 7.6 + - - +
93A LEU* 2.9 22.9 + - - +
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Residues in contact with ASP 90 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A GLN* 3.1 19.3 + - - +
25A TYR* 4.2 19.9 - - + +
28A HIS* 3.1 19.9 + - - -
32A PHE* 5.6 0.2 - - - -
44A GLU* 3.2 25.3 - - - +
86A MET 3.0 17.2 + - - +
87A LEU* 3.7 11.1 - - - +
89A SER* 1.3 78.6 - - - +
91A LEU* 1.3 53.5 + - - +
93A LEU* 2.9 8.7 + - - +
94A GLU* 2.7 36.4 + - - +
134A LEU* 3.8 19.0 - - + +
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Residues in contact with LEU 91 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A LEU 3.0 18.3 + - - +
88A ARG* 3.5 9.4 - - + +
90A ASP* 1.3 76.6 - - - +
92A ALA* 1.3 63.8 + - - +
94A GLU* 3.0 3.2 + - - +
95A LEU* 2.9 53.9 + - + +
131A ILE* 4.1 13.0 - - + +
134A LEU* 3.5 24.8 - - + +
135A GLU* 4.0 27.1 - - + +
138A LEU* 3.7 24.7 - - + -
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Residues in contact with ALA 92 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88A ARG 3.0 14.6 + - - +
89A SER* 3.2 10.5 + - - +
91A LEU* 1.3 75.4 - - - +
93A LEU* 1.3 63.0 + - - +
95A LEU* 3.4 7.9 + - - +
96A ASP* 2.9 33.6 + - - +
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Residues in contact with LEU 93 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17A ASN* 4.8 11.4 - - + +
20A VAL* 4.0 24.7 - - + -
21A ALA* 3.7 35.9 - - + +
24A GLN* 4.1 23.1 - - + +
25A TYR* 5.4 2.2 - - + -
76A LYS* 5.6 3.6 - - + +
89A SER 2.9 11.8 + - - +
90A ASP* 2.9 11.1 + - - +
92A ALA* 1.3 76.5 - - - +
94A GLU* 1.3 69.6 + - - +
96A ASP* 3.4 7.2 + - + +
97A GLY* 3.1 19.9 + - - -
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Residues in contact with GLU 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21A ALA* 4.4 4.9 - - - +
25A TYR* 3.0 37.7 + - - +
51A GLU* 3.3 2.6 - - - +
90A ASP 2.7 17.7 + - - +
91A LEU* 3.5 4.9 - - - +
93A LEU* 1.3 75.8 - - - +
95A LEU* 1.3 65.6 + - - +
97A GLY* 3.2 2.2 + - - +
98A ALA* 3.0 24.4 + - - +
127A GLU* 3.0 16.6 - - - +
130A HIS* 3.6 8.9 + - + +
131A ILE* 3.2 23.9 - - + +
134A LEU* 3.9 10.1 - - + -
302A FE 2.1 31.4 - - - -
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Residues in contact with LEU 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A LEU* 2.9 59.4 + - + +
92A ALA* 3.7 7.2 - - - +
93A LEU 3.4 0.2 - - - -
94A GLU* 1.3 78.3 - - - +
96A ASP* 1.3 59.1 + - - +
98A ALA* 3.5 6.9 + - + +
99A LYS* 3.0 26.6 + - - +
131A ILE* 3.7 14.4 - - + -
135A GLU* 5.7 1.8 - - - +
1G MET* 4.5 23.8 - - + -
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Residues in contact with ASP 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A ALA* 2.9 24.1 + - - +
93A LEU* 3.7 11.9 - - + +
95A LEU* 1.3 76.7 - - - +
97A GLY* 1.3 67.3 + - - +
99A LYS* 3.1 33.8 + - - +
100A ASN* 3.0 30.1 + - - +
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Residues in contact with GLY 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14A LEU* 5.7 0.2 - - - +
17A ASN* 3.7 26.2 - - - +
93A LEU 3.1 12.4 + - - -
94A GLU* 3.2 4.0 + - - -
96A ASP* 1.3 79.2 - - - +
98A ALA* 1.3 55.6 + - - +
100A ASN* 3.1 5.8 + - - +
101A LEU* 2.9 35.0 + - - +
127A GLU* 6.0 0.9 - - - -
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Residues in contact with ALA 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A GLU 3.0 16.9 + - - +
95A LEU* 3.6 12.1 - - + +
97A GLY* 1.3 74.1 - - - +
99A LYS* 1.3 63.7 + - - +
101A LEU* 3.2 5.7 + - - +
102A ARG* 3.0 49.2 + - - +
124A LEU* 4.1 16.4 - - + -
127A GLU* 5.4 7.2 - - + +
128A GLU* 5.7 2.0 - - + -
131A ILE* 5.5 5.6 - - + -
1G MET* 5.7 3.8 - - - -
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Residues in contact with LYS 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A LEU 3.0 14.1 + - - +
96A ASP* 3.1 33.6 + - - +
98A ALA* 1.3 78.6 - - - +
100A ASN* 1.3 69.4 + - - +
102A ARG* 3.6 9.0 + - - +
103A GLU* 3.4 20.6 + - - +
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Residues in contact with ASN 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10A TYR* 4.9 2.5 - - + -
13A LYS* 3.3 32.7 + - + +
14A LEU* 4.1 15.1 - - + +
17A ASN* 2.8 33.5 + - - +
96A ASP* 3.0 23.7 + - - +
97A GLY 3.1 5.1 + - - +
99A LYS* 1.3 82.8 - - - +
101A LEU* 1.3 59.2 + - - +
103A GLU* 3.1 16.0 + - - +
104A ALA* 2.8 28.6 + - - +
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Residues in contact with LEU 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14A LEU* 3.9 12.7 - - + +
18A GLU* 5.9 0.2 - - - +
58A TYR* 3.4 24.5 - - - +
97A GLY 2.9 17.9 + - - +
98A ALA* 3.4 9.0 - - - +
100A ASN* 1.3 76.1 - - - +
102A ARG* 1.3 53.7 + - - +
104A ALA* 3.0 5.7 + - - +
105A ILE* 2.7 43.0 + - + +
120A MET* 3.8 32.5 - - + +
123A ILE* 4.4 4.9 - - + -
124A LEU* 3.8 37.5 - - + +
127A GLU* 3.9 18.2 - - + +
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Residues in contact with ARG 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98A ALA* 3.0 39.8 + - - +
99A LYS* 3.8 8.1 - - - +
101A LEU* 1.3 74.9 - - - +
103A GLU* 1.3 62.7 + - - +
105A ILE* 4.4 0.4 - - - -
106A GLY* 3.1 18.4 + - - -
124A LEU* 3.9 21.8 - - + +
128A GLU* 2.8 30.9 + - - -
1G MET* 4.4 11.0 - - - +
111G VAL 5.5 0.2 + - - -
112G HIS* 2.9 45.1 + - + +
113G ASP* 4.4 15.8 + - - +
114G TYR* 3.6 22.3 - - + +
115G VAL* 4.7 0.8 - - - +
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Residues in contact with GLU 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10A TYR* 3.0 32.1 + - + +
13A LYS* 5.9 3.6 - - - -
99A LYS* 3.4 12.1 + - - +
100A ASN* 3.1 17.8 + - - +
102A ARG* 1.3 81.1 - - - +
104A ALA* 1.3 63.1 + - - +
106A GLY* 3.5 1.4 + - - -
107A TYR* 3.1 22.2 + - - +
112G HIS* 5.5 2.2 - - - -
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Residues in contact with ALA 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10A TYR* 3.7 32.8 - - + +
14A LEU* 3.8 14.4 - - + -
100A ASN 2.8 13.2 + - - +
101A LEU 3.4 7.2 - - - +
103A GLU* 1.3 77.8 - - - +
105A ILE* 1.3 57.3 + - - +
107A TYR* 3.2 3.7 + - - +
108A ALA* 2.9 29.6 + - - +
120A MET* 3.6 22.1 - - - +
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Residues in contact with ILE 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A LEU* 2.7 27.5 + - + +
104A ALA* 1.3 70.0 - - - +
106A GLY* 1.3 63.0 + - - +
107A TYR 3.2 0.2 + - - -
108A ALA* 3.2 3.8 + - - +
109A ASP 3.1 11.8 + - - -
117A ARG* 2.7 50.7 + - + +
120A MET* 3.8 29.6 - - + +
121A ILE* 3.7 27.1 - - + +
124A LEU* 3.9 18.2 - - + -
114G TYR* 3.5 37.5 - - + -
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Residues in contact with GLY 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102A ARG 3.1 12.3 + - - -
103A GLU 4.0 1.6 - - - -
105A ILE* 1.3 79.7 - - - +
107A TYR* 1.3 61.7 + - - +
109A ASP* 3.3 15.9 - - - +
110A SER* 3.3 9.5 + - - -
117A ARG* 3.9 3.8 - - - -
112G HIS* 4.7 7.2 - - - -
114G TYR* 3.4 17.7 - - - -
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Residues in contact with TYR 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A ASP* 3.3 25.4 + - - -
6A LYS* 3.1 43.4 - - + +
7A VAL* 3.9 12.6 - - + -
10A TYR* 3.6 31.6 - + + +
103A GLU 3.1 14.6 + - - +
104A ALA 3.4 7.4 - - - +
105A ILE 3.1 0.6 - - - -
106A GLY* 1.3 75.6 - - - +
108A ALA* 1.3 67.8 + - - +
110A SER* 2.6 30.7 + - - -
111A VAL* 3.1 15.9 + - + +
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Residues in contact with ALA 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7A VAL* 4.6 5.2 - - + -
104A ALA 2.9 20.1 + - - +
105A ILE 3.7 3.1 - - - +
107A TYR* 1.3 74.9 - - - +
109A ASP* 1.3 56.5 + - - +
111A VAL* 3.2 11.4 - - - +
112A HIS 2.9 8.5 + - - -
113A ASP* 2.7 52.2 + - + +
116A SER* 4.7 2.2 - - - -
117A ARG* 4.0 5.2 - - + +
120A MET* 3.7 21.1 - - + -
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Residues in contact with ASP 109 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A ILE 3.1 4.9 + - - -
106A GLY* 3.3 10.3 - - - +
108A ALA* 1.3 77.7 - - - +
110A SER* 1.3 63.8 + - - +
112A HIS* 3.1 16.8 + - - -
114A TYR* 3.7 25.6 + - - -
117A ARG* 2.9 47.8 + - - +
109G ASP* 5.4 4.5 - - - +
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Residues in contact with SER 110 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A GLY 3.3 6.3 + - - -
107A TYR* 2.6 37.6 + - - -
109A ASP* 1.3 83.4 - - - +
111A VAL* 1.3 56.5 + - - +
112A HIS* 3.1 20.4 + - - -
----------------------------------------------------------
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Residues in contact with VAL 111 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A ASP* 3.6 33.2 - - + +
7A VAL* 3.5 27.1 - - + -
107A TYR* 3.1 22.6 + - + +
108A ALA* 3.2 15.0 - - - +
110A SER* 1.3 79.4 + - - +
112A HIS* 1.3 67.9 + - - +
113A ASP* 3.3 8.5 + - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il