Contacts of the helix formed by residues 314 - 392 (chain C) in PDB entry 2M6I
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 314 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310C GLN* 4.3 15.7 + - - +
312C GLU* 3.2 18.6 + - - +
313C PHE* 1.3 82.0 - - - +
315C GLY* 1.3 59.1 + - - -
316C GLY 3.2 9.7 + - - -
317C GLY 4.5 3.6 + - - -
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Residues in contact with GLY 315 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310C GLN* 3.9 23.2 - - - +
314C GLY* 1.3 70.5 - - - -
316C GLY* 1.3 62.7 + - - +
317C GLY 3.2 2.7 - - - -
318C PHE* 3.4 24.3 + - - +
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Residues in contact with GLY 316 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314C GLY* 3.2 5.3 + - - -
315C GLY* 1.3 78.3 - - - +
317C GLY* 1.3 56.7 + - - +
318C PHE* 3.3 2.6 + - - +
389C ILE* 5.0 2.9 + - - +
390C GLN* 3.6 12.3 + - - +
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Residues in contact with GLY 317 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314C GLY 4.5 3.8 + - - -
315C GLY 3.2 1.0 - - - -
316C GLY* 1.3 76.6 - - - +
318C PHE* 1.3 61.5 + - - +
389C ILE 3.5 2.0 - - - -
390C GLN* 3.6 21.6 - - - -
391C ARG* 3.2 22.2 + - - +
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Residues in contact with PHE 318 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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307C VAL* 3.6 39.3 - - + -
308C SER* 4.9 7.9 - - - -
315C GLY* 3.4 20.3 + - - +
316C GLY 3.3 4.2 + - - -
317C GLY* 1.3 76.5 - - - +
389C ILE* 1.3 79.1 + - + +
391C ARG* 3.0 36.4 + - - +
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Residues in contact with ILE 389 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316C GLY 5.0 0.6 + - - -
318C PHE* 1.3 94.4 - - + +
390C GLN* 1.3 72.4 + - + +
391C ARG* 3.2 6.3 + - - -
392C ALA* 4.0 13.6 + - - +
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Residues in contact with GLN 390 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316C GLY 3.6 17.9 - - - +
317C GLY* 3.4 15.3 + - - -
318C PHE 3.2 0.8 - - - -
389C ILE* 1.3 87.7 - - + +
391C ARG* 1.3 60.0 + - - +
392C ALA 3.4 1.8 - - - -
393C LYS* 3.5 20.7 - - + +
395C ILE* 5.4 3.3 - - - +
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Residues in contact with ARG 391 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304C VAL* 3.4 46.8 + - - +
307C VAL* 3.5 25.4 - - + +
317C GLY 3.2 8.6 + - - +
318C PHE* 3.0 29.6 + - - +
389C ILE 4.9 0.4 - - - -
390C GLN* 1.3 77.4 - - - +
392C ALA* 1.3 73.5 + - + +
393C LYS 2.9 7.4 + - - -
394C LYS* 3.1 18.0 + - - +
395C ILE* 4.9 9.6 - - - +
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Residues in contact with ALA 392 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389C ILE 4.0 10.7 + - - +
390C GLN 3.4 0.4 - - - -
391C ARG* 1.3 88.2 - - + +
393C LYS* 1.3 62.1 + - - +
394C LYS* 2.9 25.1 + - - +
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Residues in contact with LYS 393 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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390C GLN* 3.5 18.9 + - + +
391C ARG 2.9 0.6 - - - +
392C ALA* 1.3 78.3 - - - +
394C LYS* 1.3 71.6 + - - +
395C ILE* 4.9 19.1 - - + +
308D SER* 4.7 18.0 + - - -
318D PHE* 6.0 3.8 - - - -
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Residues in contact with LYS 394 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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243C TRP* 3.2 29.2 - - + +
244C ILE* 4.8 1.8 - - - +
246C LEU* 4.8 16.3 - - - +
391C ARG* 3.1 14.4 + - - +
392C ALA* 2.9 20.2 + - - +
393C LYS* 1.3 86.0 - - - +
395C ILE* 1.3 55.6 + - - +
396C ASP* 2.7 33.5 - - - +
305D ASN* 3.0 29.4 - - - +
308D SER* 4.5 7.1 + - - -
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Residues in contact with ILE 395 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390C GLN 5.4 5.8 - - - +
391C ARG* 4.9 9.4 - - - +
393C LYS* 4.9 18.4 - - + +
394C LYS* 1.3 73.6 - - - +
396C ASP* 1.3 77.7 + - - +
397C LYS* 3.2 45.8 + - + +
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Residues in contact with ASP 396 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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243C TRP* 3.2 40.6 - - + -
394C LYS* 2.7 28.0 - - - +
395C ILE* 1.3 83.9 - - - +
397C LYS* 1.3 58.5 + - - +
398C ILE* 3.0 13.2 + - - +
399C SER* 3.3 22.7 + - - +
400C ARG* 4.5 3.5 + - - +
305D ASN 4.4 4.3 - - - +
308D SER* 4.1 18.2 + - - -
309D ARG* 5.4 0.9 + - - -
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Residues in contact with LYS 397 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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395C ILE* 3.2 45.4 - - + +
396C ASP* 1.3 76.5 - - - +
398C ILE* 1.3 60.4 + - - +
399C SER 3.3 1.1 - - - -
400C ARG* 3.5 53.1 - - + +
401C ILE* 4.7 4.7 + - - +
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Residues in contact with ILE 398 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239C TRP* 3.4 38.0 - - + -
242C PHE* 4.8 7.9 - - + -
243C TRP* 3.4 42.0 - - + -
300C GLU* 3.7 35.7 - - + +
396C ASP* 4.5 4.0 - - - -
397C LYS* 1.3 76.2 - - - +
399C SER* 1.3 60.1 + - - +
400C ARG 3.1 8.3 + - - -
401C ILE* 3.3 21.7 - - + +
402C GLY 3.4 3.8 + - - -
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Residues in contact with SER 399 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239C TRP* 6.1 0.2 - - - -
240C ILE* 5.9 0.9 - - - -
243C TRP* 5.5 5.6 - - - -
396C ASP* 3.3 19.0 + - - +
397C LYS 3.3 0.2 - - - -
398C ILE* 1.3 81.7 - - - +
400C ARG* 1.3 62.4 + - - +
401C ILE 3.3 1.1 - - - -
402C GLY* 4.0 4.0 - - - +
403C PHE* 3.2 53.9 - - - +
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Residues in contact with ARG 400 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396C ASP 4.5 2.9 + - - +
397C LYS* 3.5 54.1 - - + +
398C ILE 3.1 0.6 - - - -
399C SER* 1.3 83.4 - - - +
401C ILE* 1.3 62.2 + - + +
403C PHE* 5.3 0.2 - - - -
404C PRO* 3.0 20.0 - - - +
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Residues in contact with ILE 401 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239C TRP* 3.2 35.2 - - + -
296C SER* 5.3 6.1 - - - +
300C GLU* 5.7 0.4 - - - +
397C LYS 5.1 3.1 - - - +
398C ILE* 3.3 20.0 - - + +
400C ARG* 1.3 86.4 - - + +
402C GLY* 1.3 74.3 + - - +
403C PHE 3.4 0.2 - - - -
404C PRO* 3.3 6.6 - - - +
405C LEU* 2.9 37.1 + - + +
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Residues in contact with GLY 402 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239C TRP* 4.1 19.3 - - - -
240C ILE* 6.0 2.2 - - - -
398C ILE 3.4 6.0 + - - -
399C SER* 4.7 1.6 - - - -
401C ILE* 1.3 91.0 - - - +
403C PHE* 1.3 66.8 + - - +
405C LEU* 2.9 22.1 + - - +
406C ALA* 2.9 15.6 + - - +
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Residues in contact with PHE 403 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240C ILE* 3.4 33.4 - - + -
399C SER* 3.2 34.6 + - - +
400C ARG* 5.3 0.2 - - - -
402C GLY* 1.3 77.6 - - - +
404C PRO* 1.3 68.9 - - + +
405C LEU 3.2 0.3 + - - -
406C ALA* 3.3 11.8 + - - +
407C PHE* 3.4 12.6 + - - +
306D PHE* 6.2 4.0 - + - -
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Residues in contact with PRO 404 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400C ARG* 3.0 28.9 - - - +
401C ILE* 3.3 12.3 - - - +
403C PHE* 1.3 99.5 - - + +
405C LEU* 1.3 57.8 + - - -
406C ALA 3.4 0.2 - - - -
407C PHE* 4.1 8.3 - - + +
408C LEU* 3.3 27.2 + - - +
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Residues in contact with LEU 405 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236C ILE* 6.4 1.1 - - - -
239C TRP* 5.1 23.8 - - + +
296C SER* 5.4 10.5 - - - +
401C ILE* 2.9 30.8 + - + +
402C GLY* 2.9 13.5 + - - +
404C PRO* 1.3 79.1 - - - +
406C ALA* 1.3 69.3 + - + +
408C LEU* 4.0 5.4 - - - +
409C ILE* 3.4 38.4 + - + +
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Residues in contact with ALA 406 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236C ILE* 3.2 53.2 - - + +
402C GLY 2.9 13.3 + - - +
403C PHE* 3.3 6.0 + - - +
405C LEU* 1.3 84.3 - - + +
407C PHE* 1.3 59.2 + - - +
409C ILE* 3.4 5.8 + - - +
410C PHE* 3.0 30.0 + - - +
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Residues in contact with PHE 407 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403C PHE 3.4 12.2 + - - +
404C PRO* 4.4 7.6 - - + +
406C ALA* 1.3 76.4 - - - +
408C LEU* 1.3 63.4 + - + +
410C PHE* 4.4 15.7 - + - -
411C ASN* 3.0 41.2 + - + +
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Residues in contact with LEU 408 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404C PRO 3.3 19.6 + - - +
405C LEU* 4.0 6.7 - - - +
406C ALA 3.3 0.6 - - - -
407C PHE* 1.3 82.3 - - + +
409C ILE* 1.3 57.4 + - + +
411C ASN* 3.8 2.8 - - - +
412C LEU* 2.9 52.8 + - + +
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Residues in contact with ILE 409 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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232C LEU* 3.2 32.5 - - + -
235C VAL* 6.2 4.3 - - + -
236C ILE* 6.3 2.5 - - + -
289C VAL* 6.4 2.7 - - + -
405C LEU* 3.4 32.8 + - + +
406C ALA* 3.4 5.1 + - - +
407C PHE 3.3 0.2 - - - -
408C LEU* 1.3 80.2 - - + +
410C PHE* 1.3 60.1 + - - +
412C LEU* 3.5 11.8 - - + +
413C PHE* 2.9 40.4 + - + +
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Residues in contact with PHE 410 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229C ILE* 3.6 31.4 - - + -
232C LEU* 5.1 17.0 - - + -
233C LEU* 5.6 15.3 - - + -
236C ILE* 4.7 10.8 - - + -
406C ALA 3.0 18.8 + - - +
407C PHE* 4.0 16.8 - + - +
409C ILE* 1.3 80.3 - - - +
411C ASN* 1.3 59.4 + - - +
413C PHE* 3.8 2.8 + - + +
414C TYR* 3.1 41.2 + + + +
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Residues in contact with ASN 411 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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407C PHE* 3.0 37.9 + - + +
408C LEU* 3.8 4.0 - - + +
410C PHE* 1.3 75.9 - - - +
412C LEU* 1.3 60.5 + - - +
413C PHE 3.4 0.2 - - - -
414C TYR* 3.9 8.3 - - - +
415C TRP* 3.2 71.0 + - - +
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Residues in contact with LEU 412 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408C LEU* 2.9 46.3 + - + +
409C ILE* 3.0 14.1 + - + +
411C ASN* 1.3 80.5 - - - +
413C PHE* 1.3 59.2 + - + +
415C TRP* 5.2 0.7 - - - -
416C ILE* 2.9 40.8 + - + +
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Residues in contact with PHE 413 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228C TYR* 3.6 35.9 - + - -
232C LEU* 4.0 33.9 - - + -
285C ILE* 5.0 15.9 - - + -
289C VAL* 5.9 7.4 - - + -
409C ILE* 2.9 26.0 + - + +
410C PHE* 4.4 2.0 - - + +
412C LEU* 1.3 79.0 - - + +
414C TYR* 1.3 59.7 + - - +
416C ILE* 4.0 10.8 - - + -
417C ILE* 2.9 48.7 + - + +
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Residues in contact with TYR 414 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225C ILE* 6.3 1.8 - - + -
229C ILE* 5.5 7.9 - - + -
410C PHE* 3.1 38.6 + + + +
411C ASN* 3.8 8.0 + - - -
412C LEU 3.4 0.2 - - - -
413C PHE* 1.3 77.9 - - - +
415C TRP* 1.3 78.3 + + - +
417C ILE* 3.7 5.4 + - + +
418C TYR* 3.4 61.5 + + - +
430C HIS* 5.0 0.6 + - - -
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Residues in contact with TRP 415 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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411C ASN* 3.2 47.7 + - - +
412C LEU* 5.0 0.9 - - - +
414C TYR* 1.3 92.0 - + - +
416C ILE* 1.3 61.1 + - + +
418C TYR* 3.7 1.4 + - - +
419C LYS* 2.9 60.2 + - - +
430C HIS* 3.8 32.5 - + + -
431C HIS* 3.5 39.3 - + - -
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Residues in contact with ILE 416 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412C LEU* 2.9 34.6 + - + +
413C PHE* 4.4 13.5 - - + +
414C TYR 3.4 0.2 - - - -
415C TRP* 1.3 79.3 - - + +
417C ILE* 1.3 61.1 + - + +
419C LYS* 3.7 14.3 - - + +
420C ILE* 2.9 34.9 + - + +
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Residues in contact with ILE 417 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225C ILE* 3.5 66.2 - - + +
228C TYR* 5.2 7.6 - - + -
413C PHE* 2.9 40.7 + - + +
414C TYR* 3.9 7.4 - - + +
415C TRP 3.3 0.2 - - - -
416C ILE* 1.3 80.7 - - + +
418C TYR* 1.3 71.1 + - + +
419C LYS 3.1 0.4 - - - -
420C ILE* 3.0 23.3 - - + +
421C VAL* 3.2 14.2 - - + +
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Residues in contact with TYR 418 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225C ILE* 5.6 3.8 - - + -
414C TYR* 3.4 55.9 + + - +
415C TRP 3.9 0.7 - - - +
417C ILE* 1.3 91.2 - - + +
419C LYS* 1.3 59.1 + - - +
421C VAL* 4.4 6.6 - - - +
422C ARG* 2.9 43.0 + - - +
428C GLU* 4.7 0.7 - - - +
430C HIS* 3.7 30.3 - + + +
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Residues in contact with LYS 419 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415C TRP* 2.9 58.8 + - - +
416C ILE* 3.7 17.7 - - + +
417C ILE 3.1 0.2 - - - -
418C TYR* 1.3 78.2 - - - +
420C ILE* 1.3 57.1 + - - +
421C VAL 3.1 1.3 - - - -
422C ARG* 2.7 27.3 + - - +
423C ARG* 2.8 13.2 + - - -
425C ASP* 4.7 10.0 - - - +
428C GLU* 2.8 41.1 + - + +
430C HIS* 4.4 2.1 - - + +
431C HIS* 5.9 3.4 - - - +
----------------------------------------------------------
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Residues in contact with ILE 420 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225C ILE* 6.2 1.6 - - + -
281C LYS* 4.2 24.5 - - - +
416C ILE* 2.9 22.2 + - + +
417C ILE* 3.0 23.3 - - + +
419C LYS* 1.3 75.8 - - - +
421C VAL* 1.3 75.8 + - + +
422C ARG 3.0 1.6 + - - -
423C ARG* 3.3 18.1 + - - +
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Residues in contact with VAL 421 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222C TYR* 5.3 17.7 - - + +
225C ILE* 5.5 6.5 - - + -
417C ILE* 3.2 22.7 - - + +
418C TYR* 4.5 8.5 - - - +
419C LYS 3.1 0.6 - - - -
420C ILE* 1.3 81.6 - - + +
422C ARG* 1.3 69.3 + - + +
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Residues in contact with ARG 422 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418C TYR* 2.9 39.6 + - - +
419C LYS* 2.7 8.3 + - - +
421C VAL* 1.3 90.9 + - - +
423C ARG* 1.3 60.1 + - - +
424C GLU* 2.7 18.6 + - - +
425C ASP* 3.6 16.5 + - - +
426C GLU* 3.8 9.7 + - + +
427C PHE* 3.1 45.8 + - - +
428C GLU* 3.1 41.5 + - - +
430C HIS* 5.6 1.2 - - - -
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Residues in contact with ARG 423 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419C LYS 2.8 16.3 + - - -
420C ILE* 3.3 12.0 + - - +
422C ARG* 1.3 75.0 - - - +
424C GLU* 1.3 75.0 + - + +
425C ASP* 3.4 10.8 - - - +
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Residues in contact with GLU 424 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422C ARG 2.7 9.4 + - - +
423C ARG* 1.3 91.3 + - + +
425C ASP* 1.3 78.8 + - - +
426C GLU* 3.5 5.1 - - + +
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Residues in contact with ASP 425 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419C LYS* 4.7 11.1 - - - +
422C ARG* 3.6 16.0 - - - +
423C ARG 3.4 9.8 - - - +
424C GLU* 1.3 85.4 - - - +
426C GLU* 1.3 63.1 + - - +
427C PHE 3.7 0.7 - - - -
428C GLU* 3.9 36.3 + - + +
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Residues in contact with GLU 426 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422C ARG* 3.8 12.0 - - + +
424C GLU* 3.5 6.0 - - + -
425C ASP* 1.3 77.2 - - - +
427C PHE* 1.3 77.8 + - + +
428C GLU 3.5 0.9 - - - -
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Residues in contact with PHE 427 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422C ARG* 3.1 38.0 + - - +
426C GLU* 1.3 94.8 - - + +
428C GLU* 1.3 67.9 + - - +
429C HIS* 3.5 8.4 - - - +
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Residues in contact with GLU 428 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418C TYR 4.7 0.4 - - - +
419C LYS* 2.8 50.3 + - + -
422C ARG* 3.1 25.8 + - - +
425C ASP* 3.9 29.5 - - + +
426C GLU 3.5 2.2 - - - -
427C PHE* 1.3 80.2 - - - +
429C HIS* 1.3 69.8 + - - +
430C HIS* 2.8 50.0 + - + +
431C HIS* 4.5 5.0 + - - +
432C HIS 5.1 3.3 + - - -
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Residues in contact with HIS 429 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427C PHE* 3.5 6.9 - - - +
428C GLU* 1.3 80.3 - - - +
430C HIS* 1.3 63.7 + - - +
431C HIS 5.4 0.9 - - - -
432C HIS* 5.2 19.0 + + + +
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Residues in contact with HIS 430 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414C TYR* 5.0 0.4 + - - -
415C TRP* 3.8 44.9 - + + -
418C TYR* 3.7 33.7 - + + +
419C LYS* 4.4 5.2 - - + +
422C ARG* 5.6 0.7 - - - -
428C GLU* 2.8 56.7 + - + +
429C HIS* 1.3 82.7 + - - +
431C HIS* 1.3 70.8 + - + +
432C HIS 4.9 0.6 - - - +
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Residues in contact with HIS 431 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415C TRP* 3.5 39.2 - + - -
419C LYS* 5.9 3.8 - - - +
428C GLU* 4.5 4.0 + - - +
430C HIS* 1.3 84.7 - - + +
432C HIS* 1.3 72.6 + - - +
433C HIS* 2.9 38.1 + + + +
434C HIS 5.6 0.9 - - - +
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Residues in contact with HIS 432 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428C GLU* 5.1 3.6 + - - -
429C HIS* 5.2 17.2 + + + +
430C HIS 4.9 4.6 - - - +
431C HIS* 1.3 81.1 - - - +
433C HIS* 1.3 63.3 + - - +
434C HIS 3.8 2.8 - - - -
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Residues in contact with HIS 433 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431C HIS* 2.9 36.0 - + + +
432C HIS* 1.3 79.2 - - - +
434C HIS* 1.3 68.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 434 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431C HIS* 5.6 1.0 + - - +
432C HIS 3.8 2.2 - - - -
433C HIS* 1.3 85.6 - - - +
----------------------------------------------------------
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Residues in contact with MET 215 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216D LEU* 1.3 73.0 + - + +
217D GLU* 3.4 18.1 + - - +
218D ARG 5.2 0.3 + - - -
219D GLN* 4.4 10.2 + - - +
274D LEU* 3.0 45.0 - - + +
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Residues in contact with LEU 216 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215D MET* 1.3 88.5 - - + +
217D GLU* 1.3 61.5 + - - +
218D ARG 3.4 2.0 - - - -
219D GLN* 3.3 39.6 + - + +
220D LEU* 3.5 8.5 + - - +
272D ALA 3.8 22.0 - - - +
273D SER* 2.8 30.6 + - - +
274D LEU* 5.4 0.2 - - + -
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Residues in contact with GLU 217 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215D MET* 3.4 14.3 - - - +
216D LEU* 1.3 77.8 - - - +
218D ARG* 1.3 94.1 + - - +
219D GLN 3.2 0.6 + - - -
220D LEU* 3.5 17.7 - - - +
221D GLY 5.0 0.2 + - - -
273D SER 3.0 1.4 + - - -
274D LEU* 2.9 53.0 - - + +
276D LYS* 5.4 1.9 - - - +
277D VAL* 3.0 34.0 - - + +
278D SER* 4.2 11.6 + - - -
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Residues in contact with ARG 218 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215D MET 5.2 0.4 + - - -
216D LEU* 3.4 0.4 - - - +
217D GLU* 1.3 105.6 + - + +
219D GLN* 1.3 59.4 + - + +
220D LEU 3.2 5.5 + - - -
221D GLY* 4.2 6.3 + - - -
222D TYR* 4.2 8.3 - - - -
277D VAL* 3.2 34.0 - - + +
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Residues in contact with GLN 219 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215D MET 4.4 11.0 + - - +
216D LEU* 3.3 36.7 + - + +
217D GLU 3.2 1.0 - - - -
218D ARG* 1.3 84.0 - - + +
220D LEU* 1.3 59.2 + - - +
221D GLY 3.5 1.6 - - - -
222D TYR* 3.3 38.7 + - + +
223D TYR* 4.7 1.4 + - - +
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Residues in contact with LEU 220 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216D LEU 3.5 3.2 + - - +
217D GLU 3.5 13.0 - - - +
218D ARG 3.2 0.8 - - - -
219D GLN* 1.3 77.7 - - - +
221D GLY* 1.3 68.7 + - - +
222D TYR 3.0 2.5 - - - -
223D TYR* 2.9 33.0 + - + +
224D LEU* 3.1 20.0 + - + +
267D SER 6.2 0.2 - - - +
268D SER* 4.2 11.9 - - - +
273D SER* 3.2 32.1 - - - +
275D PRO* 3.6 39.0 - - + -
278D SER* 3.8 17.9 - - - +
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Residues in contact with GLY 221 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217D GLU 5.0 0.2 + - - -
218D ARG 4.2 6.5 + - - -
219D GLN 3.5 0.8 - - - -
220D LEU* 1.3 78.1 - - - +
222D TYR* 1.3 56.7 + - - +
224D LEU* 3.2 14.7 + - - +
225D ILE* 2.9 42.4 + - - +
278D SER* 5.2 1.0 + - - -
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Residues in contact with TYR 222 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218D ARG 4.2 5.8 - - - -
219D GLN* 3.3 46.6 + - + +
220D LEU 2.9 0.2 + - - -
221D GLY* 1.3 79.4 - - - +
223D TYR* 1.3 59.9 + - - +
225D ILE* 3.4 21.4 + - + +
226D GLN* 3.5 21.7 + - - +
421D VAL* 5.3 17.3 - - + +
----------------------------------------------------------
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Residues in contact with TYR 223 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219D GLN 4.7 0.8 + - - +
220D LEU* 2.9 26.4 + - + +
222D TYR* 1.3 78.1 - - - +
224D LEU* 1.3 61.4 + - + +
225D ILE 3.3 0.2 - - - -
226D GLN* 4.7 4.4 - - + +
227D LEU* 2.9 62.1 + - + +
267D SER* 3.8 24.2 + - - -
279E TYR* 5.8 3.6 - - - -
283E ILE* 5.5 17.3 - - + +
----------------------------------------------------------
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Residues in contact with LEU 224 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220D LEU* 3.1 31.8 + - + +
221D GLY* 3.2 12.1 + - - +
223D TYR* 1.3 80.9 - - + +
225D ILE* 1.3 59.9 + - + +
227D LEU* 4.3 5.2 - - + -
228D TYR* 2.9 73.1 + - + +
264D THR* 4.9 9.6 - - + -
267D SER* 5.1 11.2 - - - +
268D SER* 5.6 5.2 - - - +
278D SER* 3.5 24.5 - - - +
286D TRP* 5.9 1.6 - - + -
----------------------------------------------------------
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Residues in contact with ILE 225 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221D GLY* 2.9 34.9 + - - +
222D TYR* 3.7 16.6 - - + +
223D TYR 3.3 0.4 - - - -
224D LEU* 1.3 74.2 - - + +
226D GLN* 1.3 70.4 + - + +
227D LEU 3.1 1.3 - - - -
228D TYR* 3.1 12.5 + - - +
229D ILE* 3.3 17.5 + - + +
414D TYR* 6.3 1.6 - - + -
417D ILE* 3.5 59.9 - - + +
418D TYR* 5.7 4.0 - - + -
420D ILE* 6.2 1.6 - - + -
421D VAL* 5.5 7.2 - - + -
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Residues in contact with GLN 226 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222D TYR 3.5 16.9 + - - +
223D TYR* 4.7 5.6 - - + +
225D ILE* 1.3 80.8 - - + +
227D LEU* 1.3 57.2 + - - +
228D TYR 3.4 0.2 - - - -
229D ILE* 3.8 8.2 - - - +
230D PRO* 3.0 21.3 - - - +
287E LEU* 4.5 13.6 - - + +
----------------------------------------------------------
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Residues in contact with LEU 227 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223D TYR* 2.9 61.5 + - + +
224D LEU* 4.0 5.4 - - + +
225D ILE 3.1 0.4 - - - -
226D GLN* 1.3 75.5 - - - +
228D TYR* 1.3 74.8 + - + +
229D ILE 3.3 0.7 - - - -
230D PRO* 3.2 20.5 - - + +
231D SER* 3.3 15.7 - - - -
263D LEU* 4.9 7.6 - - + +
264D THR* 5.7 3.4 - - + +
267D SER* 3.5 24.9 - - - +
287E LEU* 5.9 1.6 - - - -
----------------------------------------------------------
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Residues in contact with TYR 228 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
224D LEU* 2.9 54.8 + - + +
225D ILE* 3.1 7.6 + - - +
227D LEU* 1.3 86.5 - - + +
229D ILE* 1.3 56.0 + - - +
231D SER* 2.9 12.9 + - - -
232D LEU* 2.7 47.2 + - + +
264D THR* 4.3 16.2 - - + +
286D TRP* 3.9 21.3 + - - -
413D PHE* 3.6 48.9 - + - -
417D ILE* 5.2 7.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 229 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225D ILE* 3.3 14.2 + - + +
226D GLN* 3.8 8.1 - - - +
228D TYR* 1.3 79.6 - - - +
230D PRO* 1.3 68.1 - - + +
232D LEU* 3.7 6.5 - - + +
233D LEU* 3.0 49.5 + - + +
410D PHE* 3.7 34.3 - - + -
414D TYR* 5.5 9.6 - - + -
----------------------------------------------------------
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Residues in contact with PRO 230 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226D GLN 3.0 16.2 - - - +
227D LEU* 3.2 20.4 - - + +
229D ILE* 1.3 103.7 - - + +
231D SER* 1.3 62.2 + - - +
233D LEU* 3.9 8.9 - - + +
234D ILE* 3.1 39.2 + - + +
287E LEU* 4.8 18.4 - - + -
290E CYS* 5.6 6.7 - - - -
291E LEU* 5.3 11.9 - - + -
----------------------------------------------------------
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Residues in contact with SER 231 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227D LEU* 3.3 21.5 - - - -
228D TYR* 2.9 27.9 + - - +
230D PRO* 1.3 82.1 - - - +
232D LEU* 1.3 60.3 + - - +
234D ILE* 4.5 6.3 - - - +
235D VAL* 2.9 28.8 + - - +
260D VAL* 4.9 6.6 - - - +
263D LEU* 5.5 15.7 - - - -
264D THR* 6.0 2.7 - - - -
----------------------------------------------------------
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Residues in contact with LEU 232 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228D TYR* 2.7 33.3 + - + +
229D ILE* 3.7 6.5 - - + +
231D SER* 1.3 81.2 + - - +
233D LEU* 1.3 64.9 + - + +
234D ILE 3.3 0.2 - - - -
235D VAL* 3.0 13.9 + - + +
236D ILE* 3.0 33.1 + - + +
409D ILE* 3.2 33.4 - - + +
410D PHE* 5.1 17.9 - - + +
413D PHE* 4.0 35.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 233 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229D ILE* 3.0 47.3 + - + +
230D PRO* 3.5 8.7 + - + +
232D LEU* 1.3 76.8 - - + +
234D ILE* 1.3 62.1 + - - +
235D VAL 3.3 0.9 + - - -
236D ILE* 3.3 20.8 + - + +
237D LEU* 3.2 23.0 + - + +
410D PHE* 5.6 15.5 - - + -
291E LEU* 4.0 30.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE 234 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
230D PRO* 3.1 22.7 + - + +
231D SER* 4.5 5.4 - - - +
233D LEU* 1.3 77.2 - - - +
235D VAL* 1.3 59.9 + - + +
237D LEU* 3.7 10.9 + - + +
238D SER* 3.3 19.1 + - - -
252D ARG* 4.7 7.4 + - - +
256D GLY* 6.6 0.2 - - - -
259D THR* 5.8 8.3 - - + -
260D VAL* 6.5 0.7 - - + -
263D LEU* 5.2 12.8 - - + -
290E CYS* 4.6 24.5 - - + +
291E LEU* 4.1 24.0 - - + -
294E VAL* 4.6 23.8 - - + -
298E LEU* 4.8 3.9 - - + +
----------------------------------------------------------
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Residues in contact with VAL 235 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231D SER 2.9 22.2 - - - +
232D LEU* 3.0 19.4 + - + +
234D ILE* 1.3 77.2 - - + +
236D ILE* 1.3 69.5 + - + +
238D SER* 3.1 24.4 + - - +
239D TRP* 3.5 7.2 + - + +
260D VAL* 3.2 40.8 - - + -
293D PHE* 5.3 14.8 - - + -
409D ILE* 6.2 4.3 - - + -
----------------------------------------------------------
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Residues in contact with ILE 236 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232D LEU* 3.0 21.6 + - + +
233D LEU* 3.3 17.5 + - + +
235D VAL* 1.3 80.9 - - + +
237D LEU* 1.3 67.2 + - + +
238D SER 3.4 0.3 + - - -
239D TRP* 3.5 7.4 + - - +
240D ILE* 3.2 26.8 + - + +
405D LEU* 6.4 0.9 - - - -
406D ALA* 3.2 50.3 - - + +
409D ILE* 6.3 1.6 - - + -
410D PHE* 4.7 13.5 - - + -
----------------------------------------------------------
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Residues in contact with LEU 237 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233D LEU* 3.2 20.4 + - + +
234D ILE* 3.9 12.1 - - + +
235D VAL 3.2 0.4 - - - -
236D ILE* 1.3 76.1 - - + +
238D SER* 1.3 67.8 + - - +
240D ILE* 3.2 23.6 + - + +
241D SER 3.3 8.0 + - - -
291E LEU* 4.8 13.2 - - + -
294E VAL 5.5 0.4 - - - -
295E PHE* 4.8 26.9 - - + -
298E LEU* 3.4 40.9 - - + +
----------------------------------------------------------
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Residues in contact with SER 238 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
234D ILE 3.3 8.6 + - - -
235D VAL* 3.1 17.9 + - - +
237D LEU* 1.3 78.6 - - - +
239D TRP* 1.3 66.2 + - - +
241D SER* 2.8 22.7 + - - -
242D PHE* 2.9 14.2 + - - +
252D ARG* 3.6 32.1 + - - +
253D VAL* 5.0 3.6 - - - +
256D GLY* 5.2 9.2 - - - -
257D ILE* 5.5 4.3 - - - +
260D VAL* 6.4 0.4 - - - -
293D PHE* 5.4 6.6 - - - -
298E LEU* 4.4 0.2 - - - +
----------------------------------------------------------
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Residues in contact with TRP 239 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235D VAL* 3.5 6.6 + - + +
236D ILE* 3.5 9.5 + - - +
237D LEU 3.3 0.4 - - - -
238D SER* 1.3 81.7 + - - +
240D ILE* 1.3 61.3 + - + +
241D SER 2.9 2.2 - - - -
242D PHE* 2.7 45.7 + + + +
243D TRP* 3.0 38.2 + + + -
293D PHE* 4.5 24.6 + + - -
296D SER* 4.4 32.3 - - - -
297D ALA* 4.6 9.0 - - - +
300D GLU* 5.6 1.3 - - + -
398D ILE* 3.4 30.7 - - + -
401D ILE* 3.2 35.2 - - + -
402D GLY* 4.1 15.7 - - - -
405D LEU* 5.2 20.3 - - + +
----------------------------------------------------------
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Residues in contact with ILE 240 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236D ILE* 3.2 24.9 - - + +
237D LEU* 3.2 19.7 + - + +
239D TRP* 1.3 76.9 - - + +
241D SER* 1.3 57.2 + - - +
243D TRP* 3.2 42.4 - - + +
244D ILE* 5.3 0.3 + - - +
402D GLY 6.1 1.6 - - - -
403D PHE* 3.4 35.9 - - + -
302E ALA* 3.7 18.7 - - + +
306E PHE* 6.5 0.4 - - + -
----------------------------------------------------------
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Residues in contact with SER 241 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237D LEU 3.3 0.6 + - - -
238D SER 2.8 17.5 + - - -
239D TRP 2.9 0.4 - - - -
240D ILE* 1.3 76.6 - - - +
242D PHE* 1.3 62.7 + - - +
243D TRP 3.0 4.0 + - - -
244D ILE* 3.1 8.7 - - - +
245D ASN* 2.7 42.1 + - - -
252D ARG* 3.2 13.9 - - - -
298E LEU* 3.4 19.8 - - - +
301E TYR* 4.3 9.2 - - - -
302E ALA* 3.9 19.1 - - - -
----------------------------------------------------------
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Residues in contact with PHE 242 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238D SER* 2.9 12.9 + - - +
239D TRP* 2.7 42.6 + + + +
241D SER* 1.3 78.6 + - - +
243D TRP* 1.3 75.9 + + - +
245D ASN 3.7 0.2 - - - -
246D LEU* 2.9 39.6 + - + +
253D VAL* 3.5 40.4 - - + -
257D ILE* 6.0 0.4 - - + -
297D ALA* 3.9 35.0 - - + -
300D GLU* 4.0 25.1 - - + -
301D TYR* 4.5 14.6 - + - -
398D ILE* 4.9 2.7 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il