Contacts of the helix formed by residues 314 - 392 (chain D) in PDB entry 2M6I
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 314 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310D GLN* 4.3 16.0 + - - +
312D GLU* 3.2 21.0 + - - +
313D PHE* 1.3 82.2 - - - +
315D GLY* 1.3 58.3 + - - -
316D GLY 3.2 9.2 + - - -
317D GLY 4.5 3.5 + - - -
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Residues in contact with GLY 315 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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307D VAL* 6.5 0.7 - - - -
310D GLN* 3.9 22.3 - - - +
312D GLU* 5.0 3.6 - - - -
314D GLY* 1.3 70.3 - - - -
316D GLY* 1.3 62.9 + - - +
317D GLY 3.2 2.5 - - - -
318D PHE* 3.4 24.2 + - - +
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Residues in contact with GLY 316 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314D GLY* 3.2 5.5 - - - -
315D GLY* 1.3 78.9 - - - +
317D GLY* 1.3 57.0 + - - +
318D PHE* 3.3 2.8 + - - +
389D ILE* 5.0 2.1 + - - +
390D GLN* 4.8 7.3 - - - +
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Residues in contact with GLY 317 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314D GLY 4.5 3.0 + - - -
315D GLY* 3.2 1.0 - - - -
316D GLY* 1.3 77.4 - - - +
318D PHE* 1.3 61.9 + - - +
389D ILE 3.5 2.0 - - - -
390D GLN* 3.6 18.2 - - - -
391D ARG* 3.2 25.5 + - - +
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Residues in contact with PHE 318 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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393C LYS* 6.0 4.3 - - - -
304D VAL 5.7 0.9 - - - -
307D VAL* 3.4 36.6 - - + -
308D SER* 5.4 4.7 - - - -
315D GLY* 3.4 21.1 + - - +
316D GLY 3.3 3.6 + - - -
317D GLY* 1.3 79.7 - - - +
389D ILE* 1.3 74.1 + - + +
391D ARG* 3.3 14.8 - - - +
392D ALA 4.8 0.3 + - - -
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Residues in contact with ILE 389 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316D GLY 5.0 2.0 + - - +
318D PHE* 1.3 90.9 - - + +
390D GLN* 1.3 72.1 + - + +
391D ARG 3.2 5.9 + - - -
392D ALA* 4.0 13.4 + - - +
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Residues in contact with GLN 390 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316D GLY 4.8 4.9 - - - +
317D GLY* 3.5 20.6 + - - -
318D PHE 3.2 1.0 - - - -
389D ILE* 1.3 88.7 - - + +
391D ARG* 1.3 62.2 + - - +
392D ALA 3.4 1.3 - - - -
393D LYS* 3.6 29.4 - - + +
395D ILE* 5.4 2.8 - - - +
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Residues in contact with ARG 391 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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303D ALA* 5.5 4.6 + - - +
304D VAL* 5.9 1.4 - - - +
307D VAL* 3.5 37.5 - - - +
311D ARG* 3.4 29.0 - - - +
312D GLU* 4.2 12.9 + - - +
317D GLY 3.2 10.7 + - - +
318D PHE* 3.3 13.2 - - - +
389D ILE 3.2 1.4 - - - -
390D GLN* 1.3 76.2 - - - +
392D ALA* 1.3 62.5 + - - +
393D LYS* 2.9 7.6 + - - +
394D LYS* 3.2 12.3 + - - +
395D ILE* 4.8 18.7 - - + +
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Residues in contact with ALA 392 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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318D PHE 4.8 0.2 + - - -
389D ILE 4.0 11.3 + - - +
390D GLN 3.4 0.2 - - - -
391D ARG* 1.3 73.2 - - - +
393D LYS* 1.3 69.1 + - - +
394D LYS* 2.9 14.1 + - - +
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Residues in contact with LYS 393 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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390D GLN* 3.6 27.8 - - + +
391D ARG 2.9 0.8 - - - -
392D ALA* 1.3 79.9 - - - +
394D LYS* 1.3 71.8 + - - +
395D ILE* 5.0 8.1 - - + +
308E SER* 4.9 5.9 + - - -
318E PHE* 5.7 12.6 - - + -
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Residues in contact with LYS 394 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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243D TRP* 3.3 31.3 + - - +
244D ILE* 4.7 0.4 - - - +
246D LEU* 4.8 11.7 - - - +
391D ARG 3.2 10.5 + - - +
392D ALA* 2.9 11.0 + - - +
393D LYS* 1.3 84.8 - - - +
395D ILE* 1.3 60.1 + - - +
396D ASP* 3.0 25.3 + - - +
398D ILE* 4.5 12.3 - - - +
305E ASN* 3.1 39.7 - - + +
308E SER* 4.5 13.5 + - - -
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Residues in contact with ILE 395 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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390D GLN 5.4 5.6 - - - +
391D ARG* 4.8 21.3 - - + +
393D LYS* 5.1 6.3 - - + -
394D LYS* 1.3 75.6 - - - +
396D ASP* 1.3 70.3 + - - +
397D LYS* 3.3 45.3 - - + +
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Residues in contact with ASP 396 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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243D TRP* 3.5 29.8 - - - +
394D LYS* 3.0 19.9 - - - +
395D ILE* 1.3 83.0 - - - +
397D LYS* 1.3 58.4 + - - +
398D ILE* 3.0 15.9 + - - +
399D SER* 3.2 39.3 + - - -
400D ARG* 4.5 3.3 + - - +
305E ASN* 4.7 13.6 - - - +
306E PHE* 5.2 10.8 - - - -
308E SER* 6.2 2.7 - - - -
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Residues in contact with LYS 397 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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395D ILE* 3.3 46.7 - - + +
396D ASP* 1.3 76.4 - - - +
398D ILE* 1.3 60.1 + - - +
399D SER 3.3 0.4 - - - -
400D ARG* 3.5 55.1 - - + +
401D ILE* 4.7 4.0 + - - +
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Residues in contact with ILE 398 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239D TRP* 3.4 35.9 - - + -
242D PHE* 4.9 3.8 - - + -
243D TRP* 3.4 42.3 + - + -
300D GLU* 3.3 39.0 - - + +
394D LYS* 4.5 12.6 - - - +
396D ASP* 4.5 8.3 - - - -
397D LYS* 1.3 77.2 - - - +
399D SER* 1.3 59.7 + - - +
400D ARG 3.1 7.5 + - - -
401D ILE* 3.3 23.4 - - + +
402D GLY* 3.4 4.0 + - - -
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Residues in contact with SER 399 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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243D TRP* 3.2 39.3 - - - -
396D ASP* 3.2 24.6 + - - -
397D LYS 3.3 0.6 - - - -
398D ILE* 1.3 79.5 - - - +
400D ARG* 1.3 61.4 + - - +
401D ILE 3.3 0.7 - - - -
402D GLY 4.0 2.9 - - - +
403D PHE* 3.2 40.4 - - - +
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Residues in contact with ARG 400 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396D ASP 4.5 2.9 + - - +
397D LYS* 3.5 54.5 - - + +
398D ILE 3.1 0.6 - - - -
399D SER* 1.3 82.2 - - - +
401D ILE* 1.3 62.7 + - + +
404D PRO* 3.0 19.9 - - - +
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Residues in contact with ILE 401 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239D TRP* 3.2 34.8 - - + -
296D SER* 5.3 6.1 - - - +
397D LYS 5.1 2.9 - - - +
398D ILE* 3.3 20.2 - - + +
400D ARG* 1.3 87.0 - - + +
402D GLY* 1.3 73.5 + - - +
403D PHE 3.4 0.4 - - - -
404D PRO* 3.3 6.2 - - - +
405D LEU* 2.9 38.0 + - + +
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Residues in contact with GLY 402 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239D TRP* 4.1 19.3 - - - -
240D ILE* 6.1 1.6 - - - -
243D TRP* 5.7 2.0 - - - -
398D ILE 3.4 5.7 + - - -
399D SER* 4.0 1.5 - - - -
401D ILE* 1.3 90.1 - - - +
403D PHE* 1.3 67.3 + - - +
405D LEU* 2.9 21.5 + - - +
406D ALA* 2.9 15.6 + - - +
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Residues in contact with PHE 403 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240D ILE* 3.4 33.0 - - + -
243D TRP* 3.8 14.8 - + - -
399D SER* 3.2 25.2 + - - +
402D GLY* 1.3 77.5 - - - +
404D PRO* 1.3 69.8 - - + +
405D LEU 3.2 0.2 + - - -
406D ALA* 3.3 11.6 + - - +
407D PHE* 3.4 12.6 + - - +
306E PHE* 6.1 5.6 - + - -
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Residues in contact with PRO 404 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400D ARG 3.0 28.9 - - - +
401D ILE* 3.3 13.0 - - - +
403D PHE* 1.3 100.1 - - + +
405D LEU* 1.3 58.4 + - - -
406D ALA 3.4 0.2 - - - -
407D PHE* 4.1 8.5 - - + +
408D LEU* 3.3 27.4 + - - +
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Residues in contact with LEU 405 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236D ILE* 6.4 0.9 - - - -
239D TRP* 5.2 22.7 - - + +
296D SER* 5.4 10.3 - - - +
401D ILE* 2.9 30.6 + - + +
402D GLY* 2.9 14.2 + - - +
404D PRO* 1.3 78.6 - - - +
406D ALA* 1.3 68.8 + - + +
408D LEU* 4.0 5.5 - - - +
409D ILE* 3.4 36.5 + - + +
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Residues in contact with ALA 406 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236D ILE* 3.2 53.5 - - + +
402D GLY 2.9 13.1 + - - +
403D PHE* 3.3 5.8 + - - +
405D LEU* 1.3 83.2 - - + +
407D PHE* 1.3 59.1 + - - +
409D ILE* 3.4 5.0 + - - +
410D PHE* 3.0 30.5 + - - +
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Residues in contact with PHE 407 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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403D PHE 3.4 12.0 + - - +
404D PRO* 4.4 7.4 - - + +
405D LEU 3.5 0.2 - - - -
406D ALA* 1.3 75.7 - - - +
408D LEU* 1.3 62.4 + - + +
410D PHE* 4.4 16.4 - + - -
411D ASN* 3.0 41.7 + - + +
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Residues in contact with LEU 408 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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404D PRO 3.3 18.8 + - - +
405D LEU* 4.0 6.7 - - - +
406D ALA 3.3 0.4 - - - -
407D PHE* 1.3 83.2 - - + +
409D ILE* 1.3 58.4 + - + +
411D ASN* 3.8 3.4 - - - +
412D LEU* 2.9 51.7 + - + +
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Residues in contact with ILE 409 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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232D LEU* 3.2 33.7 - - + -
235D VAL* 6.2 4.0 - - + -
236D ILE* 6.3 2.0 - - + -
289D VAL* 6.4 2.5 - - + -
405D LEU* 3.4 34.9 + - + +
406D ALA* 3.9 5.2 - - - +
408D LEU* 1.3 79.3 - - + +
410D PHE* 1.3 59.6 + - - +
412D LEU* 3.0 12.9 + - + +
413D PHE* 2.9 40.1 + - + +
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Residues in contact with PHE 410 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229D ILE* 3.7 30.7 - - + -
232D LEU* 5.1 17.7 - - + -
233D LEU* 5.6 15.0 - - + -
236D ILE* 4.7 13.2 - - + -
406D ALA 3.0 18.6 + - - +
407D PHE* 4.0 16.8 - + - +
409D ILE* 1.3 78.8 - - - +
411D ASN* 1.3 58.0 + - - +
413D PHE* 4.1 2.8 - - + +
414D TYR* 3.1 40.5 + + + +
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Residues in contact with ASN 411 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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407D PHE* 3.0 38.0 + - + +
408D LEU* 3.8 4.3 - - - +
410D PHE* 1.3 75.7 - - - +
412D LEU* 1.3 59.9 + - - +
413D PHE 3.4 0.2 - - - -
414D TYR* 3.9 8.0 - - - +
415D TRP* 3.2 71.9 + - - +
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Residues in contact with LEU 412 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408D LEU* 2.9 46.0 + - + +
409D ILE* 3.0 13.4 + - + +
411D ASN* 1.3 81.1 - - - +
413D PHE* 1.3 59.4 + - + +
414D TYR 3.4 0.2 - - - -
415D TRP* 5.2 0.4 - - - -
416D ILE* 2.9 40.3 + - + +
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Residues in contact with PHE 413 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228D TYR* 3.6 34.5 - + - -
232D LEU* 4.0 33.2 - - + -
285D ILE* 5.0 16.8 - - + -
289D VAL* 5.9 7.2 - - + -
409D ILE* 2.9 26.4 + - + +
410D PHE* 4.4 1.6 - - + +
412D LEU* 1.3 79.9 - - + +
414D TYR* 1.3 59.9 + - - +
416D ILE* 4.0 11.0 - - + -
417D ILE* 2.9 48.7 + - + +
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Residues in contact with TYR 414 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225D ILE* 6.3 1.6 - - + -
229D ILE* 5.5 8.3 - - + -
410D PHE* 3.1 40.5 + + + +
411D ASN* 4.3 8.3 - - - -
412D LEU 3.4 0.2 - - - -
413D PHE* 1.3 77.6 - - - +
415D TRP* 1.3 78.1 + + - +
417D ILE* 3.7 5.2 + - + +
418D TYR* 3.4 61.8 + + - +
430D HIS* 5.0 4.6 - - - -
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Residues in contact with TRP 415 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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411D ASN* 3.2 47.3 + - - +
412D LEU* 5.0 1.1 - - - +
414D TYR* 1.3 91.0 - + - +
416D ILE* 1.3 62.5 + - + +
418D TYR* 3.7 1.6 + - - +
419D LYS* 2.9 61.6 + - - +
430D HIS* 4.0 39.2 - + + -
431D HIS* 5.4 19.5 - + + -
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Residues in contact with ILE 416 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412D LEU* 2.9 33.6 + - + +
413D PHE* 4.4 12.6 - - + +
414D TYR 3.4 0.2 - - - -
415D TRP* 1.3 78.6 - - + +
417D ILE* 1.3 61.0 + - + +
419D LYS* 3.7 14.3 - - + +
420D ILE* 2.9 34.6 + - + +
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Residues in contact with ILE 417 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225D ILE* 3.5 65.7 - - + +
228D TYR* 5.2 7.6 - - + -
413D PHE* 2.9 40.6 + - + +
414D TYR* 3.9 7.9 - - + +
415D TRP 3.3 0.2 - - - -
416D ILE* 1.3 82.2 - - + +
418D TYR* 1.3 71.7 + - + +
419D LYS 3.2 0.4 - - - -
420D ILE* 3.0 23.0 - - + +
421D VAL* 3.2 14.2 - - + +
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Residues in contact with TYR 418 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225D ILE* 5.7 3.8 - - + -
414D TYR* 3.4 55.9 + + - +
415D TRP 3.9 0.2 - - - -
417D ILE* 1.3 90.7 - - + +
419D LYS* 1.3 61.6 + - - +
421D VAL* 4.4 6.0 - - - +
422D ARG* 2.8 48.1 + - - +
428D GLU* 5.0 0.3 - - - +
430D HIS* 3.7 28.7 - + + -
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Residues in contact with LYS 419 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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415D TRP* 2.9 57.2 + - - +
416D ILE* 3.7 17.3 - - + +
417D ILE 3.2 0.2 - - - -
418D TYR* 1.3 79.2 - - - +
420D ILE* 1.3 57.7 + - - +
421D VAL 3.1 1.1 - - - -
422D ARG* 2.7 26.6 + - - +
423D ARG* 2.8 13.3 + - - -
425D ASP* 4.7 10.0 - - - +
428D GLU* 2.8 39.6 + - + +
430D HIS* 4.5 3.2 + - - +
431D HIS* 6.0 2.6 - - - +
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Residues in contact with ILE 420 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225D ILE* 6.2 1.1 - - + -
281D LYS* 6.2 3.8 - - + -
416D ILE* 2.9 21.6 + - + +
417D ILE* 3.0 22.7 - - + +
419D LYS* 1.3 76.5 - - - +
421D VAL* 1.3 76.0 + - + +
422D ARG 3.0 1.9 + - - -
423D ARG* 3.3 17.4 + - - +
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Residues in contact with VAL 421 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222D TYR* 5.3 17.0 - - + +
225D ILE* 5.5 7.2 - - + -
417D ILE* 3.2 22.9 - - + +
418D TYR* 4.5 4.5 - - - +
419D LYS 3.1 0.8 - - - -
420D ILE* 1.3 80.3 - - + +
422D ARG* 1.3 73.9 + - - +
426D GLU* 5.7 0.3 - - - +
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Residues in contact with ARG 422 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418D TYR* 2.8 46.1 + - - +
419D LYS* 2.7 12.4 + - - +
421D VAL* 1.3 94.3 - - - +
423D ARG* 1.3 59.6 + - - +
424D GLU* 2.7 16.5 + - - +
425D ASP* 3.6 17.9 + - - +
426D GLU* 3.6 37.3 - - + +
427D PHE* 2.8 49.2 + - - +
428D GLU* 3.4 15.8 + - + +
430D HIS* 5.3 0.8 - - - -
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Residues in contact with ARG 423 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419D LYS 2.8 15.9 + - - -
420D ILE* 3.3 12.4 + - - +
422D ARG* 1.3 75.4 - - - +
424D GLU* 1.3 88.6 + - + +
425D ASP* 3.4 10.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 424 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422D ARG 2.7 9.6 + - - +
423D ARG* 1.3 95.7 + - - +
425D ASP* 1.3 78.8 + - - +
426D GLU* 3.5 14.1 - - + +
----------------------------------------------------------
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Residues in contact with ASP 425 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419D LYS* 4.7 12.8 - - - +
422D ARG* 3.6 16.2 - - - +
423D ARG 3.4 9.6 - - - +
424D GLU* 1.3 86.0 - - - +
426D GLU* 1.3 62.4 + - - +
427D PHE 3.7 0.7 - - - -
428D GLU* 3.9 35.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 426 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422D ARG* 3.6 28.9 - - + +
424D GLU* 4.4 12.2 - - + +
425D ASP* 1.3 78.7 - - - +
427D PHE* 1.3 79.5 + - + +
428D GLU 3.5 0.7 - - - -
----------------------------------------------------------
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Residues in contact with PHE 427 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422D ARG* 2.8 42.2 + - - +
426D GLU* 1.3 93.9 - - + +
428D GLU* 1.3 66.6 + - - +
429D HIS* 3.5 8.5 - - - +
----------------------------------------------------------
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Residues in contact with GLU 428 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418D TYR 5.0 0.4 - - - +
419D LYS* 2.8 44.8 + - + -
422D ARG* 3.4 17.8 + - + +
425D ASP* 3.9 35.3 + - + +
426D GLU 3.5 2.4 - - - -
427D PHE* 1.3 79.6 - - - +
429D HIS* 1.3 69.6 + - - +
430D HIS* 3.0 48.1 + - + +
431D HIS* 4.4 6.4 + - - +
432D HIS* 4.9 5.7 + - - -
----------------------------------------------------------
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Residues in contact with HIS 429 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427D PHE 3.5 8.0 - - - +
428D GLU* 1.3 80.3 + - - +
430D HIS* 1.3 64.2 + - - +
431D HIS 5.4 0.9 - - - -
432D HIS* 5.4 17.4 - + + +
----------------------------------------------------------
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Residues in contact with HIS 430 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414D TYR* 5.8 4.4 - - - -
415D TRP* 4.0 49.0 + + + -
418D TYR* 3.7 34.0 - + + +
419D LYS* 4.5 6.0 - - - +
422D ARG* 5.3 0.9 - - - -
428D GLU* 3.0 45.3 + - + +
429D HIS* 1.3 82.2 - - - +
431D HIS* 1.3 66.7 + - + +
432D HIS* 4.9 0.6 - - - +
----------------------------------------------------------
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Residues in contact with HIS 431 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415D TRP* 5.4 16.8 - + + -
419D LYS* 6.0 2.7 - - - +
428D GLU* 4.4 5.3 + - - +
430D HIS* 1.3 82.4 - - + +
432D HIS* 1.3 71.9 + - - +
433D HIS* 3.0 46.7 + + + +
434D HIS 4.4 3.4 + - - -
----------------------------------------------------------
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Residues in contact with HIS 432 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428D GLU* 4.9 6.2 + - - -
429D HIS* 5.4 15.7 - + + +
430D HIS 4.9 4.4 - - - +
431D HIS* 1.3 80.6 - - - +
433D HIS* 1.3 62.6 + - - +
434D HIS* 3.8 2.9 - - - +
----------------------------------------------------------
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Residues in contact with HIS 433 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431D HIS* 3.0 43.1 + + + +
432D HIS* 1.3 79.2 - - - +
434D HIS* 1.3 81.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS 434 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431D HIS* 4.4 4.4 + - - -
432D HIS* 5.0 2.2 - - - -
433D HIS* 1.3 91.7 - - - +
----------------------------------------------------------
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Residues in contact with MET 215 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216E LEU* 1.3 72.6 + - + +
217E GLU* 3.4 18.8 + - - +
218E ARG 5.2 0.2 + - - -
219E GLN* 4.4 10.0 + - - +
274E LEU* 3.6 32.7 - - + +
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Residues in contact with LEU 216 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215E MET* 1.3 88.8 - - - +
217E GLU* 1.3 62.4 + - - +
218E ARG 3.4 2.0 - - - -
219E GLN* 3.3 37.2 + - + +
220E LEU* 3.5 8.1 + - - +
272E ALA 3.6 24.0 - - - +
273E SER* 2.8 31.2 + - - +
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Residues in contact with GLU 217 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215E MET* 3.4 11.8 + - - +
216E LEU* 1.3 78.3 - - - +
218E ARG* 1.3 96.0 + - - +
219E GLN 3.2 0.8 + - - -
220E LEU* 3.5 18.2 - - - +
221E GLY 5.0 0.3 + - - -
273E SER 3.0 1.4 + - - -
274E LEU* 2.9 56.0 - - + +
277E VAL* 3.2 33.8 - - + +
278E SER* 4.2 11.8 + - - -
----------------------------------------------------------
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Residues in contact with ARG 218 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215E MET 5.2 0.4 + - - -
216E LEU* 3.4 0.4 - - - +
217E GLU* 1.3 105.8 + - - +
219E GLN* 1.3 60.6 + - + +
220E LEU 3.2 5.9 + - - -
221E GLY* 4.2 6.0 + - - -
222E TYR* 4.2 8.1 - - - -
277E VAL* 3.2 32.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 219 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215E MET 4.4 11.0 + - - +
216E LEU* 3.6 35.0 - - + +
217E GLU 3.2 1.2 - - - -
218E ARG* 1.3 83.5 - - + +
220E LEU* 1.3 59.1 + - - +
221E GLY 3.5 1.6 - - - -
222E TYR* 3.3 37.4 + - + +
223E TYR* 4.7 1.6 + - - +
273E SER* 6.1 0.2 - - - -
----------------------------------------------------------
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Residues in contact with LEU 220 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216E LEU 3.5 2.6 + - - +
217E GLU 3.5 13.7 - - - +
218E ARG 3.2 1.0 - - - -
219E GLN* 1.3 77.2 - - - +
221E GLY* 1.3 66.6 + - - +
222E TYR 3.0 2.9 - - - -
223E TYR* 2.8 33.4 + - + +
224E LEU* 3.1 19.2 + - + +
267E SER 6.2 0.4 - - - +
268E SER* 4.2 11.7 - - - +
273E SER* 3.2 32.3 - - - +
274E LEU 4.9 0.2 - - - -
275E PRO* 3.6 39.0 - - + -
278E SER* 3.8 16.8 - - - +
----------------------------------------------------------
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Residues in contact with GLY 221 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218E ARG 4.2 6.3 + - - -
219E GLN 3.5 1.0 - - - -
220E LEU* 1.3 78.7 - - - +
222E TYR* 1.3 56.4 + - - +
224E LEU* 3.2 15.1 + - - +
225E ILE* 2.9 41.4 + - - +
278E SER* 5.2 1.2 + - - -
----------------------------------------------------------
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Residues in contact with TYR 222 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218E ARG 4.2 6.1 - - - -
219E GLN* 3.3 46.6 + - + +
220E LEU 2.9 0.8 + - - -
221E GLY* 1.3 79.6 - - - +
223E TYR* 1.3 61.2 + - - +
225E ILE* 3.4 21.9 + - + +
226E GLN* 3.5 21.1 + - - +
421E VAL* 5.3 16.5 - - + +
----------------------------------------------------------
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Residues in contact with TYR 223 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279A TYR* 5.9 2.9 - - - -
283A ILE* 5.6 16.3 - - + +
219E GLN 4.7 1.5 + - - +
220E LEU* 2.8 25.5 + - + +
222E TYR* 1.3 78.4 - - - +
224E LEU* 1.3 61.7 + - + +
226E GLN* 4.3 5.1 - - + +
227E LEU* 2.9 62.7 + - + +
267E SER* 3.8 24.0 - - - -
----------------------------------------------------------
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Residues in contact with LEU 224 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220E LEU* 3.1 30.5 + - + +
221E GLY* 3.2 11.6 + - - +
223E TYR* 1.3 80.4 - - + +
225E ILE* 1.3 59.6 + - + +
227E LEU* 3.8 5.6 - - + -
228E TYR* 2.9 71.6 + - + +
264E THR* 4.9 10.1 - - + -
267E SER* 5.1 10.5 - - - +
268E SER* 5.6 5.8 - - - +
278E SER* 3.5 24.9 - - - +
286E TRP* 5.9 2.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 225 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221E GLY* 2.9 33.7 + - - +
222E TYR* 3.7 16.8 - - + +
223E TYR 3.3 0.4 - - - -
224E LEU* 1.3 75.4 - - + +
226E GLN* 1.3 70.0 + - + +
227E LEU 3.1 1.1 - - - -
228E TYR* 3.1 12.7 + - - +
229E ILE* 3.3 17.9 + - + +
414E TYR* 6.3 1.6 - - + -
417E ILE* 3.5 60.1 - - + +
418E TYR* 5.7 4.3 - - + -
420E ILE* 6.2 1.8 - - + -
----------------------------------------------------------
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Residues in contact with GLN 226 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287A LEU* 4.6 13.1 - - + +
222E TYR 3.5 17.3 + - - +
223E TYR* 4.7 6.1 - - + +
225E ILE* 1.3 80.7 - - + +
227E LEU* 1.3 57.8 + - - +
229E ILE* 3.8 8.2 - - - +
230E PRO* 3.0 21.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 227 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287A LEU* 6.0 1.1 - - - -
223E TYR* 2.9 62.6 + - + +
224E LEU* 4.0 4.9 - - + +
225E ILE 3.1 0.6 - - - -
226E GLN* 1.3 76.0 - - - +
228E TYR* 1.3 74.7 + - + +
229E ILE 3.3 0.7 - - - -
230E PRO* 3.2 20.8 - - + +
231E SER* 3.3 14.9 - - - -
263E LEU* 4.9 7.9 - - + +
264E THR* 5.7 3.1 - - + -
267E SER* 3.5 25.8 - - - +
----------------------------------------------------------
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Residues in contact with TYR 228 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
224E LEU* 2.9 55.3 + - + +
225E ILE* 3.1 7.4 + - - +
227E LEU* 1.3 87.0 - - + +
229E ILE* 1.3 56.1 + - - +
231E SER* 2.9 13.3 + - - -
232E LEU* 2.7 47.7 + - + +
264E THR* 4.3 16.0 - - + +
286E TRP* 3.9 20.6 + - - -
413E PHE* 3.6 49.5 - + - -
417E ILE* 5.2 7.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 229 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225E ILE* 3.3 14.4 + - + +
226E GLN* 3.8 9.0 - - - +
228E TYR* 1.3 79.4 - - - +
230E PRO* 1.3 67.7 - - + +
232E LEU* 3.7 5.5 - - + +
233E LEU* 3.0 49.4 + - + +
410E PHE* 3.7 34.1 - - + -
414E TYR* 5.5 9.0 - - + -
----------------------------------------------------------
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Residues in contact with PRO 230 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287A LEU* 4.9 17.5 - - + -
290A CYS* 5.7 6.1 - - - -
291A LEU* 5.3 12.6 - - + -
226E GLN 3.0 16.8 - - - +
227E LEU* 3.2 20.2 - - + +
229E ILE* 1.3 104.4 - - + +
231E SER* 1.3 60.2 - - - +
233E LEU* 3.9 8.7 - - + +
234E ILE* 3.1 40.6 + - + +
----------------------------------------------------------
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Residues in contact with SER 231 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227E LEU* 3.3 21.3 - - - -
228E TYR* 2.9 28.9 + - - +
230E PRO* 1.3 81.6 - - - +
232E LEU* 1.3 60.6 + - - +
234E ILE* 4.5 6.0 - - - +
235E VAL* 2.9 28.6 + - - +
260E VAL* 4.9 6.5 - - - +
263E LEU* 5.5 15.0 - - - -
264E THR* 6.0 2.7 - - - -
----------------------------------------------------------
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Residues in contact with LEU 232 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228E TYR* 2.7 34.0 + - + +
229E ILE* 3.7 5.8 - - + +
231E SER* 1.3 82.1 - - - +
233E LEU* 1.3 64.6 + - + +
234E ILE 3.3 0.2 - - - -
235E VAL* 3.0 13.3 + - + +
236E ILE* 3.0 34.4 + - + +
409E ILE* 3.2 33.4 - - + +
410E PHE* 5.1 18.2 - - + +
413E PHE* 4.0 35.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 233 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A LEU* 4.1 29.6 - - + -
229E ILE* 3.0 47.5 + - + +
230E PRO* 3.9 8.1 - - + +
232E LEU* 1.3 76.8 - - + +
234E ILE* 1.3 61.9 + - - +
235E VAL 3.3 0.5 + - - -
236E ILE* 3.3 21.7 + - + +
237E LEU* 3.2 23.2 + - + +
410E PHE* 5.6 15.9 - - + -
----------------------------------------------------------
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Residues in contact with ILE 234 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290A CYS* 4.6 24.0 - - + +
291A LEU* 4.1 23.8 - - + -
294A VAL* 4.7 22.7 - - + -
298A LEU* 4.9 0.6 - - + +
230E PRO* 3.1 22.3 + - + +
231E SER* 4.5 6.3 - - - +
233E LEU* 1.3 76.1 - - - +
235E VAL* 1.3 60.8 + - + +
237E LEU* 3.7 13.3 + - + +
238E SER* 3.3 20.3 + - - -
252E ARG* 4.7 9.1 + - - +
259E THR* 5.7 8.5 - - + -
260E VAL* 6.5 0.9 - - + -
263E LEU* 5.2 13.5 - - + -
----------------------------------------------------------
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Residues in contact with VAL 235 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231E SER 2.9 22.2 + - - +
232E LEU* 3.0 19.1 + - + +
234E ILE* 1.3 77.7 - - + +
236E ILE* 1.3 69.5 + - + +
238E SER* 3.1 24.2 + - - +
239E TRP* 3.6 7.2 + - + +
260E VAL* 3.2 41.3 - - + -
293E PHE* 5.3 14.1 - - + -
409E ILE* 6.2 4.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 236 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232E LEU* 3.0 22.5 + - + +
233E LEU* 3.3 17.5 + - + +
235E VAL* 1.3 80.5 - - + +
237E LEU* 1.3 67.6 + - + +
238E SER 3.4 0.3 + - - -
239E TRP* 3.5 6.7 + - - +
240E ILE* 3.2 28.2 + - + +
405E LEU* 6.4 0.9 - - - -
406E ALA* 3.2 49.4 - - + +
409E ILE* 6.3 1.8 - - + -
410E PHE* 4.7 13.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 237 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A LEU* 4.8 12.8 - - + +
294A VAL* 5.5 0.7 - - + -
295A PHE* 4.8 26.0 - - + -
298A LEU* 3.4 40.8 - - + +
233E LEU* 3.2 20.2 + - + +
234E ILE* 3.9 12.6 - - + +
235E VAL 3.2 0.6 - - - -
236E ILE* 1.3 76.7 - - + +
238E SER* 1.3 67.5 + - - +
240E ILE* 3.1 23.8 + - + +
241E SER* 3.2 8.0 + - - -
----------------------------------------------------------
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Residues in contact with SER 238 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298A LEU* 4.4 0.9 - - - +
234E ILE 3.3 11.4 + - - -
235E VAL* 3.1 17.6 + - - +
237E LEU* 1.3 77.6 - - - +
239E TRP* 1.3 67.9 + - - +
241E SER* 2.8 24.4 + - - -
242E PHE* 2.9 14.9 + - - +
252E ARG* 3.9 23.9 + - - +
253E VAL* 5.1 3.8 - - - +
256E GLY* 5.2 10.6 - - - -
257E ILE* 5.5 4.0 - - - +
260E VAL* 6.5 0.7 - - - -
293E PHE* 5.4 6.6 - - - -
----------------------------------------------------------
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Residues in contact with TRP 239 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235E VAL* 3.6 6.4 + - + +
236E ILE* 3.5 10.4 + - - +
237E LEU 3.3 0.4 - - - -
238E SER* 1.3 81.1 + - - +
240E ILE* 1.3 59.9 + - + +
241E SER 2.9 4.9 - - - -
242E PHE* 2.8 48.6 + + + +
243E TRP* 3.4 8.4 + - + +
293E PHE* 4.5 24.6 + + - -
296E SER* 4.4 31.8 - - - -
297E ALA* 4.7 9.7 - - - +
300E GLU* 5.6 1.3 - - + -
398E ILE* 3.4 37.0 - - + -
399E SER* 6.1 0.4 - - - -
401E ILE* 3.2 34.5 - - + -
402E GLY* 4.1 16.6 - - - -
405E LEU* 5.1 19.1 - - + +
----------------------------------------------------------
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Residues in contact with ILE 240 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302A ALA* 3.5 13.6 - - + +
306A PHE* 6.2 4.7 - - + -
236E ILE* 3.2 25.6 - - + +
237E LEU* 3.1 20.3 + - + +
239E TRP* 1.3 76.6 - - + +
241E SER* 1.3 55.8 + - - +
243E TRP* 2.8 28.7 + - + -
399E SER* 5.9 1.3 - - - -
402E GLY 6.0 1.3 - - - -
403E PHE* 3.4 38.4 - - + +
----------------------------------------------------------
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Residues in contact with SER 241 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298A LEU* 3.3 30.2 - - - +
301A TYR* 4.4 8.7 - - - -
302A ALA* 3.9 16.6 - - - -
237E LEU 3.2 1.8 + - - -
238E SER 2.8 15.1 + - - -
239E TRP 2.9 0.6 - - - -
240E ILE* 1.3 76.8 - - - +
242E PHE* 1.3 58.0 + - - +
243E TRP* 3.3 4.9 - - - -
244E ILE* 2.9 19.3 - - - +
245E ASN* 2.7 25.7 + - - -
252E ARG* 3.3 15.7 - - - -
----------------------------------------------------------
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Residues in contact with PHE 242 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238E SER* 2.9 11.8 + - - +
239E TRP* 2.8 48.1 + + + +
241E SER* 1.3 74.6 - - - +
243E TRP* 1.3 66.4 + - - +
244E ILE 2.9 6.6 + - - -
245E ASN 3.6 0.2 - - - -
246E LEU* 2.9 57.6 + - + +
253E VAL* 3.6 35.7 - - + -
297E ALA* 4.0 31.9 - - + -
300E GLU* 4.0 15.9 - - + -
301E TYR* 4.5 15.7 - + - -
398E ILE* 4.8 3.1 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il