Contacts of the helix formed by residues 5 - 49 (chain D) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1D ALA 3.9 5.4 + - - +
3D GLY 3.3 5.9 - - - +
4D ASP* 1.3 77.2 - - - +
6D PRO* 1.3 73.3 - - - +
7D ALA* 2.8 21.5 + - - +
8D LYS* 2.8 30.0 + - + +
9D ALA* 3.3 5.1 + - - +
17I SER* 5.6 0.5 + - - -
20I GLU* 3.8 14.7 - - - +
21I TYR* 2.7 33.6 + - - -
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Residues in contact with PRO 6 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4D ASP 3.2 10.8 - - - +
5D ASP* 1.3 90.1 - - - +
7D ALA* 1.3 55.2 + - - +
9D ALA* 3.2 9.8 + - + +
10D ALA* 2.9 29.9 + - - +
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Residues in contact with ALA 7 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5D ASP* 2.8 14.9 + - - +
6D PRO* 1.3 80.5 - - - +
8D LYS* 1.3 56.9 + - - +
10D ALA* 3.4 7.2 + - - +
11D PHE* 2.8 29.1 + - - +
21I TYR* 3.4 34.5 - - + +
24I TYR* 4.1 3.9 - - + -
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Residues in contact with LYS 8 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2D GLU* 2.8 35.8 + - - +
3D GLY* 4.0 23.6 - - - +
5D ASP* 2.8 16.4 + - + +
7D ALA* 1.3 77.1 - - - +
9D ALA* 1.3 59.7 + - - +
11D PHE* 3.2 1.1 + - + +
12D ASN* 2.8 51.0 + - - +
20I GLU* 4.2 5.4 - - - +
24I TYR* 3.2 32.0 - - + +
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Residues in contact with ALA 9 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3D GLY 6.1 1.6 - - - +
5D ASP 3.3 4.6 + - - +
6D PRO* 3.2 14.3 + - + +
8D LYS* 1.3 79.9 - - - +
10D ALA* 1.3 58.1 - - - +
12D ASN* 4.0 6.3 - - - +
13D SER* 2.8 30.9 + - - -
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Residues in contact with ALA 10 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6D PRO 2.9 15.4 + - - +
7D ALA* 3.6 8.1 - - - +
9D ALA* 1.3 74.3 - - - +
11D PHE* 1.3 65.8 + - - +
13D SER* 3.2 6.9 + - - -
14D LEU* 2.9 35.5 + - + +
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Residues in contact with PHE 11 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7D ALA 2.8 22.2 + - - +
8D LYS* 3.5 4.3 - - + +
10D ALA* 1.3 73.6 - - - +
12D ASN* 1.3 72.7 + - - +
14D LEU* 3.1 11.2 + - + +
15D GLN* 2.8 67.8 + - + +
24I TYR* 3.4 68.4 - + + -
27I ALA* 3.7 21.3 - - + -
28I MET* 3.9 11.9 - - + -
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Residues in contact with ASN 12 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8D LYS* 2.8 47.1 + - - +
9D ALA* 4.0 6.0 - - - +
11D PHE* 1.3 91.6 - - - +
13D SER* 1.3 57.6 + - - +
15D GLN* 3.2 9.3 + - - +
16D ALA* 3.0 28.8 + - - +
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Residues in contact with SER 13 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9D ALA 2.8 21.2 + - - -
10D ALA* 3.4 8.7 - - - -
12D ASN* 1.3 78.6 - - - +
14D LEU* 1.3 58.2 - - - +
16D ALA* 3.4 7.2 + - - +
17D SER* 3.0 30.8 + - - -
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Residues in contact with LEU 14 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10D ALA* 2.9 25.1 + - + +
11D PHE* 3.5 10.3 - - + +
13D SER* 1.3 75.4 - - - +
15D GLN* 1.3 59.9 + - - +
17D SER* 3.6 9.8 - - - +
18D ALA* 2.8 31.4 + - - +
28I MET* 3.6 21.6 - - + +
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Residues in contact with GLN 15 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11D PHE* 2.8 50.1 + - + +
12D ASN* 3.4 11.9 - - - +
14D LEU* 1.3 78.2 - - - +
16D ALA* 1.3 56.5 + - - +
18D ALA* 3.5 4.1 + - - +
19D THR* 2.8 34.3 + - - -
27I ALA* 4.3 4.1 + - - +
28I MET* 3.2 37.4 - - - +
31I VAL* 3.9 24.4 - - - +
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Residues in contact with ALA 16 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12D ASN 3.0 12.5 + - - +
13D SER* 3.6 10.8 - - - +
15D GLN* 1.3 73.5 - - - +
17D SER* 1.3 63.8 + - - +
19D THR* 3.4 7.4 + - - -
20D GLU* 3.0 24.8 + - - +
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Residues in contact with SER 17 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13D SER 3.0 17.4 + - - -
14D LEU* 3.6 13.5 - - - +
15D GLN 3.3 0.2 - - - -
16D ALA* 1.3 75.5 - - - +
18D ALA* 1.3 64.5 + - - +
20D GLU* 3.3 9.6 + - - +
21D TYR* 3.0 51.7 + - - -
5h ASP* 5.6 0.3 + - - -
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Residues in contact with ALA 18 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14D LEU 2.8 22.3 + - - +
15D GLN* 3.7 6.7 - - - +
17D SER* 1.3 73.8 - - - +
19D THR* 1.3 52.3 + - - +
21D TYR* 3.1 8.5 + - - +
22D ILE* 2.8 41.9 + - + +
28I MET* 4.6 11.9 - - - -
31I VAL* 4.5 17.9 - - + -
32I ILE* 5.8 3.8 - - + -
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Residues in contact with THR 19 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15D GLN* 2.8 23.3 + - - +
16D ALA* 3.6 7.6 - - - -
18D ALA* 1.3 75.6 - - - +
20D GLU* 1.3 63.9 + - - +
22D ILE* 3.3 13.6 + - + +
23D GLY* 3.0 18.9 + - - -
31I VAL* 5.5 3.3 - - - +
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Residues in contact with GLU 20 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16D ALA 3.0 14.2 + - - +
17D SER* 3.5 12.2 - - - +
18D ALA 3.2 0.2 - - - -
19D THR* 1.3 76.8 - - - +
21D TYR* 1.3 67.3 + - + +
23D GLY* 3.1 5.6 + - - -
24D TYR* 2.6 64.4 + - + -
2h GLU* 5.1 7.4 - - - +
5h ASP* 3.8 19.1 - - - +
8h LYS* 4.2 8.0 - - - +
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Residues in contact with TYR 21 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17D SER* 3.0 36.5 + - - +
18D ALA* 3.8 5.8 - - - +
20D GLU* 1.3 85.8 - - - +
22D ILE* 1.3 56.0 + - - +
24D TYR* 3.3 22.5 + + + +
25D ALA* 2.8 32.7 + - - +
26H TRP* 3.5 23.3 - + - -
5h ASP* 2.7 24.8 + - - -
7h ALA* 3.4 29.3 - - + +
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Residues in contact with ILE 22 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18D ALA* 2.8 25.3 + - + +
19D THR* 3.4 10.3 - - + +
21D TYR* 1.3 75.4 - - - +
23D GLY* 1.3 59.7 + - - +
25D ALA* 3.1 8.0 + - + +
26D TRP* 2.9 44.9 + - + +
31I VAL* 3.5 34.1 - - + +
32I ILE* 5.6 1.3 - - - -
35I ALA* 3.6 33.7 - - + -
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Residues in contact with GLY 23 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19D THR 3.0 14.1 + - - -
20D GLU* 3.1 6.0 + - - -
22D ILE* 1.3 76.5 - - - +
24D TYR* 1.3 59.9 + - - +
26D TRP* 3.9 5.1 - - - +
27D ALA* 2.9 31.8 + - - +
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Residues in contact with TYR 24 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20D GLU* 2.6 46.8 + - + -
21D TYR* 3.3 33.2 - + + +
22D ILE 3.2 0.2 - - - -
23D GLY* 1.3 77.5 - - - +
25D ALA* 1.3 58.5 + - - +
27D ALA* 5.6 0.2 - - + -
28D MET* 2.8 33.7 + - - +
2h GLU* 5.3 0.7 + - - -
7h ALA* 4.1 4.7 - - + -
8h LYS* 3.2 44.4 - - + +
11h PHE* 3.4 52.4 - + + -
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Residues in contact with ALA 25 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21D TYR 2.8 20.2 + - - +
22D ILE* 3.1 10.0 + - + +
24D TYR* 1.3 73.6 - - - +
26D TRP* 1.3 61.4 + - - +
28D MET* 3.8 5.0 - - - +
29D VAL* 3.1 26.2 + - - +
35I ALA* 6.0 1.1 - - + -
39I ILE* 3.7 20.6 - - + +
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Residues in contact with TRP 26 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22D ILE* 2.9 38.2 + - + +
23D GLY* 4.0 4.9 - - - +
25D ALA* 1.3 73.4 - - - +
27D ALA* 1.3 61.1 + - - +
29D VAL* 3.8 11.7 - - + -
30D VAL* 2.9 40.4 + - + +
35I ALA* 4.7 7.5 + - - +
38I GLY* 3.8 16.8 - - - -
39I ILE* 3.6 33.4 - - + +
42I PHE* 3.8 26.7 - + + -
5Y ASP* 4.3 6.3 - - - -
6Y PRO* 3.7 38.7 - - + +
7Y ALA* 3.7 18.4 - - + -
21d TYR* 3.5 25.8 - - - -
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Residues in contact with ALA 27 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23D GLY 2.9 20.4 + - - +
24D TYR* 3.7 4.5 - - + +
26D TRP* 1.3 76.7 - - - +
28D MET* 1.3 62.5 + - - +
30D VAL* 3.7 5.2 - - - +
31D VAL* 3.2 29.1 + - - +
6Y PRO* 5.3 0.9 - - - +
11h PHE* 3.7 19.3 - - + -
15h GLN* 4.4 4.7 - - - +
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Residues in contact with MET 28 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24D TYR 2.8 18.8 + - - +
25D ALA* 3.8 5.4 - - - +
27D ALA* 1.3 77.4 - - - +
29D VAL* 1.3 56.4 + - - +
31D VAL* 3.1 6.4 + - - +
32D ILE* 2.9 48.8 + - + +
37H ILE* 5.6 4.0 - - + -
41H LEU* 4.8 7.4 - - + -
11h PHE* 3.9 16.8 - - + -
14h LEU* 3.6 37.5 - - + +
15h GLN* 3.2 31.1 + - - +
18h ALA* 4.6 17.3 - - - -
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Residues in contact with VAL 29 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25D ALA 3.1 15.3 + - - +
26D TRP* 3.3 34.8 - - + +
28D MET* 1.3 75.7 - - - +
30D VAL* 1.3 65.6 + - + +
32D ILE* 4.1 14.6 - - + -
33D VAL* 2.8 49.8 + - + +
39I ILE* 4.0 26.7 - - + -
42I PHE* 4.6 4.9 - - + -
43I LYS* 4.7 12.3 - - + -
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Residues in contact with VAL 30 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26D TRP* 2.9 32.8 + - + +
27D ALA* 3.7 7.2 - - - +
29D VAL* 1.3 76.2 - - + +
31D VAL* 1.3 63.6 + - + +
33D VAL* 4.1 2.5 - - - +
34D GLY* 2.8 27.7 + - - -
42I PHE* 4.9 2.5 - - + -
6Y PRO* 3.7 36.8 - - + +
9Y ALA* 5.5 2.5 - - + -
10Y ALA* 3.9 28.3 - - + +
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Residues in contact with VAL 31 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27D ALA 3.2 14.6 + - - +
28D MET* 3.1 10.4 + - - +
30D VAL* 1.3 81.8 - - + +
32D ILE* 1.3 65.1 + - + +
34D GLY* 3.9 0.8 - - - -
35D ALA* 3.2 23.2 + - - +
15h GLN* 3.9 22.9 - - - +
18h ALA* 4.5 16.2 - - + -
19h THR* 5.4 3.8 - - - +
22h ILE* 3.5 25.2 - - + +
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Residues in contact with ILE 32 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28D MET* 2.9 41.8 + - + +
29D VAL* 3.7 13.5 - - + +
31D VAL* 1.3 79.4 - - + +
33D VAL* 1.3 59.2 + - + +
35D ALA* 4.0 2.6 - - - +
36D THR* 2.6 46.7 + - - +
41H LEU* 4.4 22.9 - - + -
44H LYS* 5.0 27.8 - - + +
48H LYS* 4.8 6.0 - - + +
18h ALA* 5.8 1.1 - - + -
22h ILE* 5.6 0.9 - - - -
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Residues in contact with VAL 33 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29D VAL* 2.8 34.3 + - + +
30D VAL 4.1 1.3 - - - +
32D ILE* 1.3 72.6 - - + +
34D GLY* 1.3 62.4 + - - +
36D THR* 4.2 5.8 - - - -
37D ILE* 2.8 40.0 + - + +
42I PHE* 3.7 26.9 - - + -
43I LYS* 5.7 4.7 - - + -
46I THR* 3.5 33.0 - - + +
10Y ALA* 5.3 0.9 - - + -
14Y LEU* 4.0 15.3 - - + -
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Residues in contact with GLY 34 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D VAL 2.8 20.1 + - - -
31D VAL* 3.9 1.3 - - - -
32D ILE 3.3 0.2 - - - -
33D VAL* 1.3 75.5 - - - +
35D ALA* 1.3 56.9 + - - +
38D GLY* 2.9 27.9 + - - -
10Y ALA* 5.7 3.8 - - - +
13Y SER* 6.3 2.2 - - - -
14Y LEU* 3.8 15.5 - - - +
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Residues in contact with ALA 35 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31D VAL 3.2 13.4 + - - +
32D ILE 4.0 1.8 - - - +
34D GLY* 1.3 72.6 - - - +
36D THR* 1.3 67.3 + - - +
38D GLY* 4.9 0.2 - - - -
39D ILE* 3.0 31.5 + - + +
48H LYS* 4.0 11.4 - - + +
22h ILE* 3.6 43.3 - - + -
26h TRP* 4.7 9.1 + - - +
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Residues in contact with THR 36 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32D ILE* 2.6 36.1 + - - +
33D VAL* 3.8 5.6 - - - -
35D ALA* 1.3 78.6 - - - +
37D ILE* 1.3 68.8 + - + +
39D ILE* 3.5 3.6 + - - +
40D LYS* 3.1 30.6 + - - +
44H LYS* 5.8 2.4 - - - +
47H SER* 5.9 2.5 - - - +
48H LYS* 3.4 32.7 - - + +
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Residues in contact with ILE 37 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33D VAL* 2.8 37.9 + - + +
36D THR* 1.3 77.3 - - + +
38D GLY* 1.3 56.7 + - - +
40D LYS* 3.1 33.0 + - + +
41D LEU* 2.7 48.6 + - + +
45I PHE* 6.3 0.7 - - + -
46I THR* 4.0 30.1 - - + +
49I ALA* 6.1 4.7 - - + -
50I SER* 4.7 0.2 - - - +
14Y LEU* 3.7 25.4 - - + -
28d MET* 5.6 5.6 - - + -
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Residues in contact with GLY 38 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34D GLY 2.9 21.3 + - - -
35D ALA 3.8 0.4 - - - -
37D ILE* 1.3 77.4 - - - +
39D ILE* 1.3 55.7 + - - +
41D LEU* 3.3 7.6 + - - +
42D PHE* 3.0 21.8 + - - +
14Y LEU* 3.9 7.7 - - - +
17Y SER* 5.1 5.6 - - - -
21Y TYR* 3.3 17.2 - - - -
26h TRP* 3.8 11.4 - - - -
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Residues in contact with ILE 39 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35D ALA* 3.0 23.2 + - + +
36D THR 3.7 4.3 - - - +
38D GLY* 1.3 71.9 - - - +
40D LYS* 1.3 61.1 + - - +
42D PHE* 3.0 4.0 + - - +
43D LYS* 2.8 34.0 + - + +
48H LYS* 3.6 33.4 - - + +
25h ALA* 3.7 39.9 - - + +
26h TRP* 3.6 35.6 - - + +
29h VAL* 4.0 23.3 - - + -
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Residues in contact with LYS 40 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36D THR* 3.1 20.1 + - - +
37D ILE* 3.1 32.5 + - + +
39D ILE* 1.3 77.8 - - - +
41D LEU* 1.3 57.7 + - + +
43D LYS* 3.1 20.5 + - + +
44D LYS* 2.8 45.2 + - + +
49I ALA 5.4 1.6 - - - +
50I SER* 3.6 35.1 + - - +
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Residues in contact with LEU 41 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37D ILE* 2.7 40.1 + - + +
38D GLY* 3.5 6.5 - - - +
40D LYS* 1.3 74.9 - - + +
42D PHE* 1.3 58.4 + - - +
44D LYS* 3.1 14.0 + - + +
45D PHE* 2.9 24.8 + - - +
48D LYS* 5.3 1.6 + - - -
14Y LEU* 3.6 29.6 - - + +
17Y SER* 4.3 8.3 - - - -
18Y ALA* 3.9 25.6 - - + +
21Y TYR* 3.7 16.2 - - + +
28d MET* 4.9 5.2 - - - -
32d ILE* 4.4 26.0 - - + -
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Residues in contact with PHE 42 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38D GLY 3.0 13.0 + - - +
39D ILE 3.0 9.3 + - - +
41D LEU* 1.3 74.9 - - - +
43D LYS* 1.3 64.1 + - - +
45D PHE* 3.1 44.9 - + + +
46D THR* 3.2 10.2 + - - +
7T ALA* 3.5 31.6 - - + -
10T ALA* 3.6 26.2 - - + -
11T PHE* 4.9 1.8 - - + -
14T LEU* 5.4 0.2 - - + -
21Y TYR* 3.6 12.0 - + + -
24Y TYR* 5.3 1.3 - + - -
26h TRP* 3.8 24.0 - + + -
29h VAL* 4.6 14.4 - - + -
30h VAL* 4.9 2.5 - - + -
33h VAL* 3.7 41.3 - - + -
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Residues in contact with LYS 43 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39D ILE* 2.8 29.7 + - + +
40D LYS* 3.2 21.3 - - + +
42D PHE* 1.3 75.5 - - + +
44D LYS* 1.3 62.9 + - + +
46D THR* 2.5 27.0 + - - +
47D SER* 3.1 9.5 + - - -
48H LYS 5.3 1.1 - - - +
50H SER* 2.8 35.0 + - - +
29h VAL* 4.7 13.5 - - + -
33h VAL* 5.7 2.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 44 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40D LYS* 2.8 31.4 + - + +
41D LEU* 3.1 22.2 + - + +
43D LYS* 1.3 74.4 - - + +
45D PHE* 1.3 61.1 + - - +
47D SER* 3.3 9.9 + - - -
48D LYS* 2.8 45.4 + - + +
50I SER* 4.0 21.0 + - - +
32d ILE* 5.0 25.4 - - + +
36d THR* 5.8 2.0 - - - +
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Residues in contact with PHE 45 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D LEU 2.9 12.2 + - - +
42D PHE* 3.1 40.6 - + + +
44D LYS* 1.3 75.6 - - - +
46D THR* 1.3 70.4 + - + +
48D LYS* 3.1 13.2 + - - +
49D ALA* 2.8 46.2 + - + +
11T PHE* 3.7 22.0 - + + -
14T LEU* 4.3 15.0 - - + -
21Y TYR* 4.1 13.9 - - + +
24Y TYR* 3.4 31.0 - - + -
25Y ALA* 3.5 20.9 - - - -
28Y MET* 4.0 15.0 - - + -
37h ILE* 6.1 0.9 - - + -
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Residues in contact with THR 46 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D PHE* 3.2 13.2 + - + +
43D LYS* 2.5 24.8 + - - +
45D PHE* 1.3 89.8 - - + +
47D SER* 1.3 53.2 + - - +
49D ALA* 3.9 6.2 - - - +
50D SER* 2.6 32.7 + - - -
33h VAL* 3.5 40.4 - - + +
37h ILE* 4.0 21.1 - - + +
----------------------------------------------------------
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Residues in contact with SER 47 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43D LYS 3.1 8.4 + - - -
44D LYS* 3.4 17.3 - - - -
45D PHE 3.1 0.2 - - - -
46D THR* 1.3 79.5 + - - +
48D LYS* 1.3 66.6 + - - +
50D SER* 3.0 24.6 + - - +
36d THR* 5.9 2.4 - - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D LEU 5.3 1.4 + - - -
44D LYS* 2.8 38.4 + - + +
45D PHE* 3.7 6.5 - - - +
47D SER* 1.3 74.8 - - - +
49D ALA* 1.3 59.7 + - - +
50D SER* 3.1 5.1 + - - +
18Y ALA 5.1 0.6 + - - -
21Y TYR* 4.5 1.8 + - - +
22Y ILE* 3.4 37.6 - - - +
25Y ALA* 3.8 22.0 - - + -
29Y VAL* 4.7 3.3 - - - +
32d ILE* 5.1 5.8 + - - +
35d ALA* 4.0 7.2 - - + +
36d THR* 3.4 51.5 + - + +
39d ILE* 3.6 29.9 - - + +
43d LYS* 5.3 1.0 - - - +
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Residues in contact with ALA 49 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45D PHE* 2.8 30.6 + - + +
46D THR* 4.1 6.5 - - - +
47D SER 3.1 0.2 - - - -
48D LYS* 1.3 75.8 - - - +
50D SER* 1.3 60.6 + - - +
25Y ALA* 4.7 7.2 - - - +
28Y MET* 3.7 27.4 - - + -
29Y VAL* 5.0 6.6 - - - +
32Y ILE* 3.4 24.3 - - - +
37h ILE* 6.1 6.5 - - + -
40h LYS* 5.4 2.4 - - - +
44h LYS* 5.9 0.7 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il