Contacts of the helix formed by residues 5 - 49 (chain J) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain J).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1J ALA 3.9 5.8 + - - +
3J GLY 3.3 5.1 - - - +
4J ASP* 1.3 76.3 - - - +
6J PRO* 1.3 67.3 - - - +
7J ALA* 2.8 21.0 + - - +
8J LYS* 2.8 34.8 + - + +
9J ALA* 3.3 5.4 + - - +
17O SER* 5.6 0.3 + - - -
20O GLU* 3.8 15.9 - - - +
21O TYR* 2.7 33.2 + - - -
26X TRP* 4.3 5.6 - - - -
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Residues in contact with PRO 6 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4J ASP 3.2 11.4 - - - +
5J ASP* 1.3 90.6 - - - +
7J ALA* 1.3 55.3 + - - +
9J ALA* 3.2 10.2 + - + +
10J ALA* 2.9 29.6 + - - +
23X GLY* 6.5 0.2 - - - -
26X TRP* 3.7 43.7 - - + +
27X ALA* 5.9 0.4 - - - -
30X VAL* 3.7 17.0 - - + +
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Residues in contact with ALA 7 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5J ASP* 2.8 14.1 + - - +
6J PRO* 1.3 79.6 - - - +
8J LYS* 1.3 56.2 + - - +
10J ALA* 3.4 2.1 + - - +
11J PHE* 2.8 29.3 + - - +
21O TYR* 3.4 33.0 - - + +
24O TYR* 4.1 2.1 - - - -
26X TRP* 3.7 9.9 - - + -
42c PHE* 3.5 30.9 - - + -
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Residues in contact with LYS 8 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2J GLU* 2.8 35.8 + - - +
3J GLY* 4.0 23.5 - - - +
5J ASP* 2.8 15.5 + - + +
7J ALA* 1.3 76.9 - - - +
9J ALA* 1.3 60.3 + - - +
11J PHE* 3.5 0.7 - - - +
12J ASN* 2.8 51.9 + - - +
20O GLU* 4.2 6.3 - - - +
24O TYR* 3.2 31.6 - - + +
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Residues in contact with ALA 9 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3J GLY 6.1 1.1 - - - +
5J ASP 3.3 4.0 + - - +
6J PRO* 3.2 15.2 + - + +
8J LYS* 1.3 79.7 - - - +
10J ALA* 1.3 60.3 + - - +
12J ASN* 3.6 7.3 + - - +
13J SER* 2.8 30.1 + - - -
30X VAL* 5.5 2.7 - - + -
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Residues in contact with ALA 10 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6J PRO 2.9 16.1 + - - +
7J ALA 3.6 0.2 - - - +
9J ALA* 1.3 74.3 - - - +
11J PHE* 1.3 64.8 + - - +
13J SER* 3.2 7.6 + - - -
14J LEU* 2.9 32.8 + - + +
30X VAL* 3.9 28.8 - - + +
33X VAL* 5.3 2.2 - - + -
34X GLY* 5.7 2.4 - - - +
42c PHE* 3.6 26.9 - - + -
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Residues in contact with PHE 11 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7J ALA 2.8 21.9 + - - +
8J LYS* 3.2 3.6 + - + +
10J ALA* 1.3 73.0 - - - +
12J ASN* 1.3 72.1 + - - +
14J LEU* 3.1 11.0 + - - +
15J GLN* 2.8 66.9 + - + +
24O TYR* 3.4 69.3 - + + -
27O ALA* 3.7 21.1 - - + -
28O MET* 3.9 6.3 - - + -
42c PHE* 4.9 0.8 - - - -
45c PHE* 3.7 15.9 - + + -
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Residues in contact with ASN 12 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8J LYS* 2.8 46.5 + - - +
9J ALA* 4.0 6.0 - - - +
11J PHE* 1.3 90.9 - - - +
13J SER* 1.3 58.3 + - - +
15J GLN* 3.2 9.2 + - - +
16J ALA* 3.0 28.2 + - - +
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Residues in contact with SER 13 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9J ALA 2.8 23.1 + - - -
10J ALA* 3.4 8.0 - - - -
11J PHE 3.2 0.2 - - - -
12J ASN* 1.3 77.2 - - - +
14J LEU* 1.3 58.4 + - - +
16J ALA* 3.4 7.8 + - - +
17J SER* 3.0 30.9 + - - -
34X GLY* 6.3 2.2 - - - -
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Residues in contact with LEU 14 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10J ALA* 2.9 21.3 + - + +
11J PHE* 3.1 7.4 + - - +
13J SER* 1.3 75.9 - - - +
15J GLN* 1.3 60.8 + - - +
17J SER* 3.4 5.8 + - - +
18J ALA* 2.8 31.5 + - - +
28O MET* 3.6 14.8 - - + +
33X VAL* 4.0 21.3 - - + -
34X GLY* 3.8 26.5 - - - +
37X ILE* 3.7 37.2 - - + -
38X GLY* 3.9 8.3 - - - +
41X LEU* 3.6 8.0 - - + +
45c PHE* 4.3 20.6 - - + -
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Residues in contact with GLN 15 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11J PHE* 2.8 50.7 + - + +
12J ASN* 3.2 12.1 + - - +
14J LEU* 1.3 78.3 - - - +
16J ALA* 1.3 56.7 + - - +
18J ALA* 3.7 4.1 - - - +
19J THR* 2.8 35.3 + - - -
27O ALA* 4.3 4.1 + - - +
28O MET* 3.2 37.8 - - - +
31O VAL* 3.9 24.3 - - - +
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Residues in contact with ALA 16 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12J ASN 3.0 12.5 + - - +
13J SER* 3.6 10.3 - - - +
14J LEU 3.3 0.2 - - - -
15J GLN* 1.3 74.5 - - - +
17J SER* 1.3 65.1 + - - +
19J THR* 3.4 7.0 + - - -
20J GLU* 3.0 24.2 + - - +
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Residues in contact with SER 17 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13J SER 3.0 18.9 + - - -
14J LEU* 3.6 9.9 - - - +
16J ALA* 1.3 75.8 - - - +
18J ALA* 1.3 63.1 + - - +
20J GLU* 3.3 9.5 + - - +
21J TYR* 3.0 50.2 + - - -
38X GLY* 5.1 6.9 - - - -
41X LEU* 4.3 6.3 - - - -
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Residues in contact with ALA 18 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14J LEU 2.8 20.9 + - - +
15J GLN* 3.7 7.6 - - - +
17J SER* 1.3 74.4 - - - +
19J THR* 1.3 51.5 + - - +
21J TYR* 3.1 6.0 + - - +
22J ILE* 2.8 42.6 + - + +
28O MET* 4.6 7.0 - - - -
31O VAL* 4.5 17.9 - - + -
32O ILE* 5.8 1.6 - - + -
41X LEU* 3.9 25.7 - - + +
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Residues in contact with THR 19 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15J GLN* 2.8 24.1 + - - +
16J ALA* 3.6 7.1 - - - -
18J ALA* 1.3 76.7 - - - +
20J GLU* 1.3 63.2 + - - +
22J ILE* 3.3 14.8 + - + +
23J GLY* 3.0 18.4 + - - -
31O VAL* 5.5 3.5 - - - +
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Residues in contact with GLU 20 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16J ALA 3.0 14.2 + - - +
17J SER* 3.5 11.5 - - - +
19J THR* 1.3 78.5 - - - +
21J TYR* 1.3 69.5 + - + +
23J GLY* 3.1 5.2 + - - -
24J TYR* 2.6 64.4 + - + +
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Residues in contact with TYR 21 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17J SER* 3.0 32.8 + - - +
18J ALA* 3.1 4.0 + - - +
20J GLU* 1.3 91.6 + - - +
22J ILE* 1.3 56.1 + - - +
24J TYR* 3.3 28.7 + + - +
25J ALA* 2.8 32.6 + - - +
26S TRP* 3.5 25.7 - + - -
38X GLY* 3.3 21.7 - - - -
41X LEU* 3.7 21.1 - - + +
42X PHE* 3.6 30.3 - + + -
45X PHE* 3.8 11.7 - - + +
48X LYS* 4.6 4.7 - - - +
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Residues in contact with ILE 22 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18J ALA* 2.8 25.1 + - + +
19J THR* 3.4 11.2 - - + +
21J TYR* 1.3 73.8 - - - +
23J GLY* 1.3 60.7 + - - +
25J ALA* 3.1 3.1 + - - +
26J TRP* 2.9 45.3 + - + +
31O VAL* 3.5 33.7 - - + +
32O ILE* 5.6 0.7 - - - -
35O ALA* 3.6 26.5 - - + -
48X LYS* 3.4 23.3 - - - +
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Residues in contact with GLY 23 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19J THR 3.0 13.8 + - - -
20J GLU 3.1 5.8 + - - -
22J ILE* 1.3 76.2 - - - +
24J TYR* 1.3 60.5 + - - +
26J TRP* 4.0 4.6 - - - +
27J ALA* 2.9 31.9 + - - +
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Residues in contact with TYR 24 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20J GLU* 2.6 46.1 + - + +
21J TYR* 3.3 33.4 - + - +
23J GLY* 1.3 76.8 - - - +
25J ALA* 1.3 60.6 + - - +
27J ALA* 3.7 6.5 - - + +
28J MET* 2.8 33.4 + - - +
42X PHE* 5.3 11.4 - + - -
45X PHE* 3.4 20.0 - + + -
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Residues in contact with ALA 25 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21J TYR 2.8 18.9 + - - +
22J ILE* 3.1 6.9 + - - +
24J TYR* 1.3 74.2 - - - +
26J TRP* 1.3 61.3 + - - +
28J MET* 3.8 1.6 - - - +
29J VAL* 3.1 25.8 + - - +
39O ILE* 3.6 22.5 - - + +
45X PHE* 3.5 15.2 - - + -
48X LYS* 3.8 27.4 - - + -
49X ALA* 4.7 3.9 - - - -
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Residues in contact with TRP 26 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22J ILE* 2.9 37.1 + - + +
23J GLY* 4.0 4.3 - - - +
25J ALA* 1.3 75.1 - - - +
27J ALA* 1.3 61.7 + - - +
29J VAL* 3.3 11.9 - - + +
30J VAL* 2.9 47.7 + - + +
35O ALA* 4.7 7.3 + - - +
38O GLY* 3.8 21.5 - - - -
39O ILE* 3.6 31.7 - - + +
42O PHE* 3.8 37.7 - + + -
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Residues in contact with ALA 27 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23J GLY 2.9 21.0 + - - +
24J TYR* 3.7 8.3 - - + +
26J TRP* 1.3 76.1 - - - +
28J MET* 1.3 61.8 + - - +
30J VAL* 3.7 5.6 - - - +
31J VAL* 3.2 28.7 + - - +
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Residues in contact with MET 28 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24J TYR 2.8 17.5 + - - +
25J ALA 3.8 3.6 - - - +
27J ALA* 1.3 77.2 - - - +
29J VAL* 1.3 58.0 + - - +
31J VAL* 3.1 14.3 + - - +
32J ILE* 2.9 47.3 + - + +
37S ILE* 5.6 8.7 - - + -
41S LEU* 4.9 19.1 - - + -
45X PHE* 4.0 19.3 - - + -
49X ALA* 3.7 25.4 - - + -
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Residues in contact with VAL 29 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25J ALA 3.1 14.9 + - - +
26J TRP* 3.3 34.3 - - + +
28J MET* 1.3 77.2 - - - +
30J VAL* 1.3 64.9 + - + +
32J ILE* 3.7 14.4 - - + -
33J VAL* 2.8 47.9 + - + +
39O ILE* 4.0 26.5 - - + -
42O PHE* 4.6 5.2 - - + -
43O LYS* 4.7 12.1 - - + -
48X LYS 4.6 7.2 - - - +
49X ALA* 5.0 4.9 - - - +
50X SER 6.1 1.6 - - - +
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Residues in contact with VAL 30 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26J TRP* 2.9 45.1 + - + +
27J ALA* 3.7 7.0 - - - +
29J VAL* 1.3 77.4 - - + +
31J VAL* 1.3 61.8 + - + +
33J VAL* 4.1 2.9 - - - +
34J GLY* 2.8 28.9 + - - -
42O PHE* 4.9 10.8 - - + -
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Residues in contact with VAL 31 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27J ALA* 3.2 15.7 + - + +
28J MET* 3.1 15.8 + - - +
30J VAL* 1.3 80.3 - - + +
32J ILE* 1.3 65.7 - - + +
34J GLY* 3.9 1.0 - - - -
35J ALA* 3.2 25.1 + - + +
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Residues in contact with ILE 32 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28J MET* 2.9 37.7 + - + +
29J VAL* 3.7 11.0 - - + +
30J VAL 3.3 0.2 - - - -
31J VAL* 1.3 79.9 - - + +
33J VAL* 1.3 59.6 + - + +
35J ALA* 4.0 2.5 - - - +
36J THR* 2.6 45.6 + - - +
41S LEU* 4.4 23.1 - - + -
44S LYS* 5.0 26.0 - - + +
48S LYS* 4.8 5.9 - - - +
49X ALA 3.4 24.9 - - - +
50X SER 5.6 1.6 - - - +
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Residues in contact with VAL 33 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29J VAL* 2.8 33.9 + - + +
30J VAL 4.1 1.6 - - - +
32J ILE* 1.3 73.4 - - + +
34J GLY* 1.3 61.7 + - - +
36J THR* 4.2 6.1 - - - -
37J ILE* 2.8 41.8 + - + +
42O PHE* 3.7 31.4 - - + -
43O LYS* 5.7 4.5 - - + -
45O PHE* 5.3 2.7 - - + -
46O THR* 3.5 32.5 - - + +
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Residues in contact with GLY 34 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30J VAL 2.8 19.7 + - - -
31J VAL* 3.9 1.6 - - - -
33J VAL* 1.3 78.1 - - - +
35J ALA* 1.3 55.8 + - - +
37J ILE* 4.7 0.6 - - - +
38J GLY* 2.9 27.9 + - - -
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Residues in contact with ALA 35 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31J VAL* 3.2 18.3 + - + +
32J ILE 4.0 2.0 - - - +
34J GLY* 1.3 72.3 - - - +
36J THR* 1.3 67.1 + - - +
38J GLY* 3.8 0.6 - - - -
39J ILE* 3.0 34.5 + - + +
48S LYS* 4.0 22.7 - - + +
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Residues in contact with THR 36 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32J ILE* 2.6 36.8 + - - +
33J VAL* 3.8 4.7 - - - -
35J ALA* 1.3 77.6 - - - +
37J ILE* 1.3 67.1 + - + +
39J ILE* 3.5 3.5 + - - +
40J LYS* 3.1 30.5 + - - +
44S LYS* 5.8 2.3 - - - +
47S SER* 5.9 1.8 - - - +
48S LYS* 3.4 32.2 - - + +
----------------------------------------------------------
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Residues in contact with ILE 37 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33J VAL* 2.8 39.0 + - + +
34J GLY* 5.4 0.2 - - - -
36J THR* 1.3 77.4 - - + +
38J GLY* 1.3 56.1 + - - +
40J LYS* 3.3 33.0 - - + +
41J LEU* 2.7 53.6 + - + +
45O PHE* 6.1 4.3 - - + -
46O THR* 4.0 29.8 - - + +
49O ALA* 6.1 6.7 - - + -
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Residues in contact with GLY 38 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34J GLY 2.9 20.9 + - - -
35J ALA* 3.8 1.3 - - - -
37J ILE* 1.3 78.7 - - - +
39J ILE* 1.3 56.2 + - - +
41J LEU* 3.3 13.7 + - - +
42J PHE* 3.1 24.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 39 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35J ALA* 3.0 24.4 + - + +
36J THR 3.7 3.6 - - - +
38J GLY* 1.3 71.5 - - - +
40J LYS* 1.3 61.4 + - - +
42J PHE* 3.0 14.6 + - + +
43J LYS* 2.8 39.9 + - + +
48S LYS* 3.6 47.1 - - + +
----------------------------------------------------------
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Residues in contact with LYS 40 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36J THR* 3.1 20.2 + - - +
37J ILE* 3.1 33.2 + - + +
39J ILE* 1.3 76.9 - - - +
41J LEU* 1.3 59.3 + - + +
43J LYS* 3.1 21.2 + - + +
44J LYS* 2.9 43.9 + - + +
49O ALA 5.4 1.8 - - - +
50O SER* 3.6 35.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 41 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37J ILE* 2.7 41.1 + - + +
38J GLY* 3.5 10.3 - - - +
40J LYS* 1.3 74.5 - - + +
42J PHE* 1.3 57.3 + - - +
44J LYS* 3.1 17.2 + - + +
45J PHE* 2.9 25.3 + - - +
48J LYS* 5.3 2.1 + - - -
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Residues in contact with PHE 42 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38J GLY 3.1 12.7 + - - +
39J ILE* 3.0 17.6 + - + +
41J LEU* 1.3 74.6 - - - +
43J LYS* 1.3 67.0 + - + +
45J PHE* 3.1 49.5 - + + +
46J THR* 3.2 19.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 43 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39J ILE* 2.8 29.0 + - + +
40J LYS* 3.1 21.8 + - + +
42J PHE* 1.3 78.9 - - + +
44J LYS* 1.3 62.3 + - - +
46J THR* 2.5 26.9 + - - +
47J SER* 3.1 9.7 + - - -
48S LYS 5.3 1.1 - - - +
50S SER* 2.8 36.5 + - - +
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Residues in contact with LYS 44 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40J LYS* 2.9 32.2 + - + +
41J LEU* 3.1 22.6 + - + +
43J LYS* 1.3 74.0 - - + +
45J PHE* 1.3 59.6 + - - +
47J SER* 3.3 10.3 + - - -
48J LYS* 2.8 45.3 + - + +
50O SER* 4.0 20.9 + - - +
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Residues in contact with PHE 45 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41J LEU 2.9 12.2 + - - +
42J PHE* 3.1 43.5 - + + +
44J LYS* 1.3 76.9 - - - +
46J THR* 1.3 70.9 + - + +
48J LYS* 3.1 16.6 + - + +
49J ALA* 2.8 52.5 + - + +
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Residues in contact with THR 46 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42J PHE* 3.2 24.2 + - + +
43J LYS* 2.5 26.0 + - - +
45J PHE* 1.3 93.1 - - + +
47J SER* 1.3 51.2 + - - +
49J ALA* 3.6 6.6 + - - +
50J SER* 2.6 33.8 + - - -
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Residues in contact with SER 47 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43J LYS 3.1 8.0 + - - -
44J LYS* 3.4 16.4 - - - -
46J THR* 1.3 80.3 + - - +
48J LYS* 1.3 65.6 + - - +
50J SER* 3.0 25.2 + - - +
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Residues in contact with LYS 48 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41J LEU 5.3 1.4 + - - -
44J LYS* 2.8 40.0 + - + +
45J PHE* 3.6 11.5 - - + +
47J SER* 1.3 74.8 - - - +
49J ALA* 1.3 58.6 + - - +
50J SER* 3.1 5.3 + - - +
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Residues in contact with ALA 49 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45J PHE* 2.8 40.5 + - + +
46J THR* 3.9 7.2 - - - +
47J SER 3.1 0.4 - - - -
48J LYS* 1.3 75.1 - - - +
50J SER* 1.3 61.9 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il