Contacts of the helix formed by residues 5 - 49 (chain P) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain P).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1P ALA 3.9 4.3 + - - +
3P GLY 3.3 5.3 - - - +
4P ASP* 1.3 76.7 - - - +
6P PRO* 1.3 68.8 - - - +
7P ALA* 2.8 21.0 + - - +
8P LYS* 2.8 36.1 + - + +
9P ALA* 3.3 5.2 + - - +
17U SER* 5.6 0.7 + - - -
20U GLU* 3.8 15.5 - - - +
21U TYR* 2.7 32.9 + - - -
26Y TRP* 4.3 5.4 - - - -
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Residues in contact with PRO 6 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4P ASP 3.2 11.4 - - - +
5P ASP* 1.3 89.8 - - - +
7P ALA* 1.3 55.2 + - - +
9P ALA* 3.2 10.3 + - + +
10P ALA* 2.9 29.5 + - - +
23Y GLY* 6.5 0.2 - - - -
26Y TRP* 3.7 42.2 - - + +
27Y ALA* 5.3 1.1 - - - +
30Y VAL* 3.7 17.6 - - + +
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Residues in contact with ALA 7 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5P ASP* 2.8 14.5 + - - +
6P PRO* 1.3 80.9 - - - +
8P LYS* 1.3 56.1 + - - +
10P ALA* 3.4 1.7 + - - +
11P PHE* 2.8 29.6 + - - +
21U TYR* 3.4 32.8 - - + +
24U TYR* 4.1 2.1 - - - -
26Y TRP* 3.7 10.6 - - + -
42d PHE* 3.5 29.7 - - + -
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Residues in contact with LYS 8 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2P GLU* 2.8 35.6 + - - +
3P GLY* 4.0 24.0 - - - +
5P ASP* 2.8 15.8 + - + +
7P ALA* 1.3 78.3 - - - +
9P ALA* 1.3 59.5 + - - +
11P PHE* 3.2 0.9 + - + +
12P ASN* 2.8 50.1 + - - +
20U GLU* 4.2 5.8 - - - +
24U TYR* 3.2 32.5 - - + +
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Residues in contact with ALA 9 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3P GLY 6.1 1.6 - - - +
5P ASP 3.3 4.4 + - - +
6P PRO* 3.2 14.5 + - + +
8P LYS* 1.3 79.7 - - - +
10P ALA* 1.3 59.4 + - - +
12P ASN* 4.0 6.9 - - - +
13P SER* 2.8 30.5 + - - -
30Y VAL* 5.5 2.9 - - + -
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Residues in contact with ALA 10 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6P PRO 2.9 15.4 + - - +
7P ALA 3.6 0.2 - - - +
9P ALA* 1.3 75.2 - - - +
11P PHE* 1.3 65.2 + - - +
13P SER* 3.2 7.3 + - - -
14P LEU* 2.9 31.2 + - + +
30Y VAL* 3.9 29.5 - - + +
33Y VAL* 5.3 1.6 - - + -
34Y GLY* 5.7 2.6 - - - +
42d PHE* 3.6 26.9 - - + -
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Residues in contact with PHE 11 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7P ALA 2.8 22.1 + - - +
8P LYS* 3.2 4.5 + - + +
10P ALA* 1.3 73.9 - - - +
12P ASN* 1.3 72.9 + - - +
14P LEU* 3.1 11.2 + - - +
15P GLN* 2.8 67.1 + - + +
24U TYR* 3.4 69.5 - + + -
27U ALA* 3.7 20.9 - - + -
28U MET* 3.9 5.6 - - + -
42d PHE* 4.9 0.4 - - - -
45d PHE* 3.7 16.8 - + + -
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Residues in contact with ASN 12 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8P LYS* 2.8 47.1 + - - +
9P ALA* 4.0 6.1 - - - +
11P PHE* 1.3 90.3 - - - +
13P SER* 1.3 56.6 + - - +
15P GLN* 3.2 9.9 + - - +
16P ALA* 3.0 28.6 + - - +
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Residues in contact with SER 13 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9P ALA* 2.8 22.4 + - - +
10P ALA* 3.4 8.7 - - - -
12P ASN* 1.3 77.8 - - - +
14P LEU* 1.3 58.3 + - - +
16P ALA* 3.4 7.0 + - - +
17P SER* 3.0 31.0 + - - -
34Y GLY* 6.3 2.2 - - - -
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Residues in contact with LEU 14 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10P ALA* 2.9 21.9 + - + +
11P PHE* 3.1 6.5 + - - +
13P SER* 1.3 74.6 - - - +
15P GLN* 1.3 60.5 + - - +
17P SER* 4.2 4.5 - - - +
18P ALA* 2.8 30.1 + - - +
28U MET* 3.6 14.8 - - + -
33Y VAL* 4.0 21.1 - - + -
34Y GLY* 3.8 26.2 - - - +
37Y ILE* 3.7 37.0 - - + -
38Y GLY* 3.9 7.9 - - - +
41Y LEU* 3.6 7.9 - - + +
45d PHE* 4.3 20.6 - - + -
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Residues in contact with GLN 15 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11P PHE* 2.8 50.7 + - + +
12P ASN* 3.4 11.9 - - - +
14P LEU* 1.3 77.2 - - - +
16P ALA* 1.3 56.8 + - - +
18P ALA* 3.5 4.0 + - - +
19P THR* 2.8 33.8 + - - +
27U ALA* 4.3 4.5 + - - +
28U MET* 3.2 37.4 - - + +
31U VAL* 3.9 24.3 - - - +
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Residues in contact with ALA 16 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12P ASN 3.0 13.1 + - - +
13P SER* 3.6 11.0 - - - +
15P GLN* 1.3 73.9 - - - +
17P SER* 1.3 63.8 + - - +
19P THR* 3.4 7.0 + - - -
20P GLU* 3.0 24.6 + - - +
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Residues in contact with SER 17 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5K ASP* 5.6 0.5 + - - -
13P SER 3.0 18.0 + - - -
14P LEU* 3.6 9.5 - - - +
16P ALA* 1.3 75.5 - - - +
18P ALA* 1.3 63.9 + - - +
20P GLU* 3.3 10.3 + - - +
21P TYR* 3.0 50.7 + - - -
38Y GLY* 5.1 7.0 - - - -
41Y LEU* 4.3 6.1 - - - -
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Residues in contact with ALA 18 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14P LEU 2.8 22.3 + - - +
15P GLN* 3.7 6.7 - - - +
17P SER* 1.3 73.5 - - - +
19P THR* 1.3 52.8 + - - +
21P TYR* 3.1 6.2 + - - +
22P ILE* 2.8 42.6 + - + +
28U MET* 4.6 7.0 - - - -
31U VAL* 4.5 18.4 - - + -
32U ILE* 5.8 1.6 - - + -
41Y LEU* 3.9 25.7 - - + +
48Y LYS* 5.1 0.2 + - - -
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Residues in contact with THR 19 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15P GLN* 2.8 22.5 + - - -
16P ALA* 3.6 7.5 - - - -
18P ALA* 1.3 76.9 - - - +
20P GLU* 1.3 62.6 + - - +
22P ILE* 3.3 14.0 + - + +
23P GLY* 3.0 19.2 + - - -
31U VAL* 5.5 3.6 - - - +
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Residues in contact with GLU 20 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2K GLU* 5.1 8.0 - - - +
5K ASP* 3.8 19.3 - - - +
8K LYS* 4.2 7.8 - - - +
16P ALA 3.0 14.5 + - - +
17P SER* 3.5 12.7 - - - +
19P THR* 1.3 77.8 - - - +
21P TYR* 1.3 67.9 + - + +
23P GLY* 3.1 6.0 + - - -
24P TYR* 2.6 64.5 + - + +
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Residues in contact with TYR 21 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5K ASP* 2.7 25.1 + - - -
7K ALA* 3.4 28.2 - - + +
17P SER* 3.0 32.4 + - - +
18P ALA* 3.8 3.8 - - - +
20P GLU* 1.3 84.9 - - - +
22P ILE* 1.3 56.0 + - - +
23P GLY 3.3 0.2 - - - -
24P TYR* 3.3 22.5 + + - +
25P ALA* 2.8 32.6 + - - +
26T TRP* 3.5 13.9 - - - -
38Y GLY* 3.3 21.7 - - - -
41Y LEU* 3.7 20.6 - - + +
42Y PHE* 3.6 24.5 - + + -
45Y PHE* 3.8 11.3 - - + +
48Y LYS* 4.5 4.4 + - - +
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Residues in contact with ILE 22 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18P ALA* 2.8 24.6 + - + +
19P THR* 3.4 9.4 - - + +
21P TYR* 1.3 74.9 - - - +
23P GLY* 1.3 60.4 + - - +
25P ALA* 3.1 3.3 + - - +
26P TRP* 2.9 45.6 + - + +
31U VAL* 3.5 34.3 - - + +
32U ILE* 5.6 0.7 - - - -
35U ALA* 3.6 25.1 - - + -
48Y LYS* 3.4 24.2 - - - +
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Residues in contact with GLY 23 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19P THR 3.0 14.0 + - - -
20P GLU* 3.1 6.2 + - - -
22P ILE* 1.3 77.0 - - - +
24P TYR* 1.3 59.5 + - - +
26P TRP* 3.6 4.6 + - - +
27P ALA* 2.9 31.2 + - - +
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Residues in contact with TYR 24 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2K GLU* 5.3 0.3 + - - -
7K ALA* 4.1 4.7 - - + -
8K LYS* 3.2 45.7 - - + +
11K PHE* 3.4 51.9 - + + -
20P GLU* 2.6 46.6 + - + -
21P TYR* 3.3 32.1 - + + +
22P ILE 3.2 0.2 - - - -
23P GLY* 1.3 77.0 - - - +
25P ALA* 1.3 59.8 + - - +
27P ALA* 5.6 0.2 - - + -
28P MET* 2.8 33.1 + - - +
42Y PHE* 5.3 4.3 - + - -
45Y PHE* 3.5 10.8 - + + -
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Residues in contact with ALA 25 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21P TYR 2.8 20.1 + - - +
22P ILE* 3.1 6.7 + - + +
24P TYR* 1.3 74.1 - - - +
26P TRP* 1.3 62.2 + - - +
28P MET* 3.5 2.1 + - - +
29P VAL* 3.1 26.0 + - - +
39U ILE* 3.6 21.0 - - + +
45Y PHE* 3.6 14.8 - - + +
48Y LYS* 3.8 27.6 - - + -
49Y ALA* 4.7 3.9 - - - -
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Residues in contact with TRP 26 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21L TYR* 3.5 26.2 - + - -
22P ILE* 2.9 38.1 + - + +
23P GLY* 4.0 4.7 - - - +
25P ALA* 1.3 72.9 - - - +
27P ALA* 1.3 62.5 + - - +
29P VAL* 3.3 11.6 - - + +
30P VAL* 2.9 48.4 + - + +
35U ALA* 4.7 7.5 + - - +
38U GLY* 3.8 16.8 - - - -
39U ILE* 3.6 33.7 - - + +
42U PHE* 3.8 35.2 - + + -
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Residues in contact with ALA 27 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11K PHE* 3.7 19.3 - - + -
15K GLN* 4.4 4.3 - - - +
23P GLY 2.9 20.4 + - - +
24P TYR* 3.7 3.8 - - + +
26P TRP* 1.3 76.9 - - - +
28P MET* 1.3 61.8 + - - +
30P VAL* 3.7 5.8 - - - +
31P VAL* 3.2 28.5 + - - +
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Residues in contact with MET 28 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11K PHE* 3.9 16.8 - - + -
14K LEU* 3.6 33.2 - - + +
15K GLN* 3.2 30.5 + - - +
18K ALA* 4.6 17.5 - - - -
24P TYR 2.8 18.6 + - - +
25P ALA 3.8 3.8 - - - +
27P ALA* 1.3 77.4 - - - +
29P VAL* 1.3 56.9 + - - +
31P VAL* 3.1 6.6 + - - +
32P ILE* 2.9 44.7 + - + +
37T ILE* 5.6 3.8 - - + -
41T LEU* 4.9 6.7 - - + -
45Y PHE* 4.0 9.0 - - + -
49Y ALA* 3.7 24.9 - - + -
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Residues in contact with VAL 29 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25P ALA 3.1 15.7 + - - +
26P TRP* 3.3 34.3 - - + +
28P MET* 1.3 76.2 - - - +
30P VAL* 1.3 66.0 + - + +
32P ILE* 3.7 14.6 - - + -
33P VAL* 2.8 49.5 + - + +
39U ILE* 4.0 25.6 - - + -
42U PHE* 4.6 5.2 - - + -
43U LYS* 4.7 12.1 - - + -
48Y LYS 4.6 7.2 - - - +
49Y ALA* 5.0 4.3 - - - +
50Y SER 6.1 1.6 - - - +
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Residues in contact with VAL 30 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26P TRP* 2.9 44.7 + - + +
27P ALA* 3.7 6.7 - - - +
29P VAL* 1.3 77.1 - - + +
31P VAL* 1.3 63.2 + - + +
33P VAL* 4.1 3.9 - - - +
34P GLY* 2.8 27.7 + - - -
42U PHE* 4.9 10.1 - - + -
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Residues in contact with VAL 31 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15K GLN* 3.9 22.9 - - - +
18K ALA* 4.5 16.2 - - + -
19K THR* 5.4 4.0 - - - +
22K ILE* 3.5 26.0 - - + +
27P ALA 3.2 14.6 + - - +
28P MET* 3.1 10.2 + - - +
30P VAL* 1.3 81.7 - - + +
32P ILE* 1.3 63.7 + - + +
34P GLY* 3.9 0.6 - - - -
35P ALA* 3.2 22.9 + - - +
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Residues in contact with ILE 32 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18K ALA* 5.8 1.1 - - + -
22K ILE* 5.6 0.7 - - - -
28P MET* 2.9 38.0 + - + +
29P VAL* 3.7 11.2 - - + +
31P VAL* 1.3 80.4 - - + +
33P VAL* 1.3 60.6 + - + +
35P ALA* 4.0 2.4 - - - +
36P THR* 2.6 46.0 + - - +
41T LEU* 4.4 23.8 - - + -
44T LYS* 5.0 25.1 - - + +
48T LYS* 4.8 6.2 - - - +
49Y ALA 3.4 25.4 - - - +
50Y SER 5.6 1.6 - - - +
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Residues in contact with VAL 33 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29P VAL* 2.8 34.1 + - + +
30P VAL* 4.1 2.0 - - - +
32P ILE* 1.3 72.5 - - + +
34P GLY* 1.3 62.3 + - - +
36P THR* 4.2 6.1 - - - -
37P ILE* 2.8 42.9 + - + +
42U PHE* 3.7 30.5 - - + -
43U LYS* 5.7 4.7 - - + -
45U PHE* 5.3 2.5 - - + -
46U THR* 3.5 32.3 - - + +
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Residues in contact with GLY 34 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30P VAL 2.8 20.5 + - - -
31P VAL* 3.9 1.3 - - - -
33P VAL* 1.3 76.1 - - - +
35P ALA* 1.3 56.4 + - - +
37P ILE* 4.7 0.6 - - - +
38P GLY* 2.9 27.5 + - - -
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Residues in contact with ALA 35 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22K ILE* 3.6 43.1 - - + -
26K TRP* 4.7 8.2 + - - +
31P VAL 3.2 13.4 + - - +
32P ILE 4.0 2.0 - - - +
34P GLY* 1.3 72.7 - - - +
36P THR* 1.3 67.4 + - - +
38P GLY* 3.8 0.4 - - - -
39P ILE* 3.0 31.8 + - + +
48T LYS* 4.0 12.6 - - + +
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Residues in contact with THR 36 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32P ILE* 2.6 36.9 + - - +
33P VAL* 3.8 5.2 - - - -
35P ALA* 1.3 77.7 - - - +
37P ILE* 1.3 69.7 + - + +
39P ILE* 3.5 3.8 + - - +
40P LYS* 3.1 30.0 + - - +
44T LYS* 5.8 2.3 - - - +
47T SER* 5.9 2.2 - - - +
48T LYS* 3.4 31.4 - - + +
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Residues in contact with ILE 37 (chain P).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28L MET* 5.6 11.0 - - + -
33P VAL* 2.8 39.4 + - + +
34P GLY 4.7 0.2 - - - +
36P THR* 1.3 79.0 - - + +
38P GLY* 1.3 55.9 + - - +
40P LYS* 3.1 31.3 + - + +
41P LEU* 2.7 53.8 + - + +
45U PHE* 6.1 3.8 - - + -
46U THR* 4.0 29.6 - - + +
49U ALA* 6.1 5.2 - - + -
50U SER* 4.7 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 38 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26K TRP* 3.8 14.3 - - - -
34P GLY 2.9 21.6 + - - -
35P ALA 3.8 0.4 - - - -
37P ILE* 1.3 77.3 - - - +
39P ILE* 1.3 54.8 + - - +
41P LEU* 3.3 14.1 + - - +
42P PHE* 3.0 24.6 + - - +
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Residues in contact with ILE 39 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25K ALA* 3.7 40.6 - - + +
26K TRP* 3.6 35.0 - - + +
29K VAL* 4.0 23.6 - - + -
35P ALA* 3.0 23.2 + - + +
36P THR 3.7 3.6 - - - +
38P GLY* 1.3 71.4 - - - +
40P LYS* 1.3 61.1 + - - +
42P PHE* 3.0 4.0 + - + +
43P LYS* 2.8 34.5 + - + +
48T LYS* 3.6 32.8 - - + +
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Residues in contact with LYS 40 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36P THR* 3.1 20.1 + - - +
37P ILE* 3.3 32.1 - - + +
39P ILE* 1.3 78.0 - - - +
41P LEU* 1.3 56.7 + - + +
43P LYS* 3.1 21.6 + - + +
44P LYS* 2.8 45.1 + - + +
49U ALA 5.4 2.2 - - - +
50U SER* 3.6 35.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 41 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28L MET* 4.8 16.6 - - + -
32L ILE* 4.4 27.6 - - + -
37P ILE* 2.7 40.3 + - + +
38P GLY* 3.5 10.5 - - - +
40P LYS* 1.3 74.3 - - + +
42P PHE* 1.3 58.4 + - - +
44P LYS* 3.1 14.4 + - + +
45P PHE* 2.9 24.9 + - - +
48P LYS* 5.3 2.3 + - - -
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Residues in contact with PHE 42 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26K TRP* 3.8 28.9 - + + -
29K VAL* 4.6 14.6 - - + -
30K VAL* 4.9 11.0 - - + -
33K VAL* 3.7 44.0 - - + -
38P GLY 3.0 12.8 + - - +
39P ILE 3.0 10.0 + - - +
41P LEU* 1.3 75.2 - - - +
43P LYS* 1.3 63.8 + - - +
45P PHE* 3.1 44.9 - + + +
46P THR* 3.2 10.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 43 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29K VAL* 4.7 13.0 - - + -
33K VAL* 5.7 3.1 - - + -
39P ILE* 2.8 29.7 + - + +
40P LYS* 3.1 21.6 + - + +
42P PHE* 1.3 75.2 - - + +
44P LYS* 1.3 62.3 + - + +
46P THR* 2.5 27.5 + - - +
47P SER* 3.1 9.5 + - - -
48T LYS 5.3 0.9 - - - +
50T SER* 2.8 35.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 44 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32L ILE* 5.0 25.4 - - + +
36L THR* 5.8 1.6 - - - +
40P LYS* 2.8 31.8 + - + +
41P LEU* 3.1 21.5 + - + +
43P LYS* 1.3 73.8 - - + +
45P PHE* 1.3 60.2 + - - +
47P SER* 3.3 10.3 + - - -
48P LYS* 2.8 45.8 + - + +
50U SER* 4.0 20.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33K VAL* 5.3 2.5 - - + -
37K ILE* 6.1 3.8 - - + -
41P LEU 2.9 12.0 + - - +
42P PHE* 3.1 43.7 - + + +
44P LYS* 1.3 75.9 - - - +
46P THR* 1.3 70.6 + - + +
48P LYS* 3.1 15.5 + - + +
49P ALA* 2.8 52.0 + - + +
----------------------------------------------------------
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Residues in contact with THR 46 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33K VAL* 3.5 41.4 - - + +
37K ILE* 4.0 21.0 - - + +
42P PHE* 3.2 13.7 + - + +
43P LYS* 2.5 24.8 + - - +
45P PHE* 1.3 89.2 - - + +
47P SER* 1.3 54.0 + - - +
49P ALA* 3.8 6.7 - - - +
50P SER* 2.6 32.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 47 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36L THR* 5.9 2.4 - - - +
43P LYS 3.1 8.4 + - - -
44P LYS* 3.4 17.5 - - - -
45P PHE 3.1 0.2 - - - -
46P THR* 1.3 79.9 + - - +
48P LYS* 1.3 66.2 + - - +
50P SER* 3.0 24.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32L ILE* 5.1 6.2 + - - +
35L ALA* 4.0 19.2 - - + +
36L THR* 3.4 51.0 + - + +
39L ILE* 3.6 40.2 - - + +
43L LYS* 5.3 1.6 - - - +
41P LEU 5.3 1.4 + - - -
44P LYS* 2.8 38.4 + - + +
45P PHE* 3.7 13.0 - - + +
47P SER* 1.3 74.4 - - - +
49P ALA* 1.3 59.8 + - - +
50P SER* 3.1 5.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain P).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37K ILE* 6.1 6.3 - - + -
40K LYS* 5.4 2.1 - - - +
44K LYS* 5.9 1.2 - - - -
45P PHE* 2.8 39.1 + - + +
46P THR* 3.9 6.5 - - - +
47P SER 3.1 0.2 - - - -
48P LYS* 1.3 74.7 - - - +
50P SER* 1.3 60.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il