Contacts of the helix formed by residues 5 - 49 (chain Q) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain Q).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1Q ALA 3.9 4.9 + - - +
3Q GLY 3.3 6.0 - - - +
4Q ASP* 1.3 75.5 - - - +
6Q PRO* 1.3 73.8 - - - +
7Q ALA* 2.8 21.5 + - - +
8Q LYS* 2.8 29.7 + - + +
9Q ALA* 3.3 5.2 + - - +
17V SER* 5.6 0.9 + - - -
20V GLU* 3.8 15.4 - - - +
21V TYR* 2.7 32.6 + - - -
26Z TRP* 4.3 5.8 - - - -
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Residues in contact with PRO 6 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4Q ASP 3.2 10.1 - - - +
5Q ASP* 1.3 90.7 - - - +
7Q ALA* 1.3 54.7 + - - +
9Q ALA* 3.2 10.9 + - + +
10Q ALA* 2.9 29.3 + - - +
26Z TRP* 3.7 43.5 - - + +
27Z ALA* 5.3 0.4 - - - +
30Z VAL* 3.7 17.8 - - + +
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Residues in contact with ALA 7 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5Q ASP* 2.8 15.1 + - - +
6Q PRO* 1.3 79.6 - - - +
8Q LYS* 1.3 56.8 + - - +
10Q ALA* 3.4 2.4 + - - +
11Q PHE* 2.8 29.1 + - - +
21V TYR* 3.4 33.0 - - + +
24V TYR* 4.1 2.0 - - - -
26Z TRP* 3.7 11.3 - - + -
42e PHE* 3.5 28.7 - - + -
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Residues in contact with LYS 8 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2Q GLU* 2.8 36.0 + - - +
3Q GLY* 4.0 23.8 - - - +
5Q ASP* 2.8 16.4 + - + +
7Q ALA* 1.3 76.9 - - - +
9Q ALA* 1.3 59.9 + - - +
11Q PHE* 3.2 0.7 + - - +
12Q ASN* 2.8 51.5 + - - +
20V GLU* 4.2 5.4 - - - +
24V TYR* 3.2 32.9 - - + +
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Residues in contact with ALA 9 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3Q GLY 6.1 1.3 - - - +
5Q ASP 3.3 5.0 + - - +
6Q PRO* 3.2 14.1 + - + +
8Q LYS* 1.3 79.8 - - - +
10Q ALA* 1.3 59.2 - - - +
12Q ASN* 3.6 6.6 + - - +
13Q SER* 2.8 30.3 + - - -
30Z VAL* 5.5 2.7 - - + -
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Residues in contact with ALA 10 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6Q PRO 2.9 15.8 + - - +
7Q ALA 3.6 0.4 - - - +
9Q ALA* 1.3 74.3 - - - +
11Q PHE* 1.3 65.4 + - - +
13Q SER* 3.2 7.5 + - - -
14Q LEU* 2.9 33.0 + - + +
30Z VAL* 3.9 29.3 - - + +
33Z VAL* 5.3 1.8 - - + -
34Z GLY* 5.7 2.6 - - - +
42e PHE* 3.6 26.7 - - + -
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Residues in contact with PHE 11 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7Q ALA 2.8 21.5 + - - +
8Q LYS* 3.5 4.0 - - + +
10Q ALA* 1.3 72.9 - - - +
12Q ASN* 1.3 72.9 + - - +
14Q LEU* 3.1 11.0 + - - +
15Q GLN* 2.8 67.8 + - + +
24V TYR* 3.4 68.6 - + + -
27V ALA* 3.7 20.6 - - + -
28V MET* 3.9 5.8 - - + -
42e PHE* 4.9 0.6 - - - -
45e PHE* 3.7 17.0 - + + -
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Residues in contact with ASN 12 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8Q LYS* 2.8 47.1 + - - +
9Q ALA* 4.0 5.8 - - - +
11Q PHE* 1.3 91.4 - - - +
13Q SER* 1.3 57.5 + - - +
15Q GLN* 3.2 8.7 + - - +
16Q ALA* 3.0 28.4 + - - +
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Residues in contact with SER 13 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9Q ALA 2.8 22.1 + - - -
10Q ALA* 3.4 8.4 - - - -
12Q ASN* 1.3 76.9 - - - +
14Q LEU* 1.3 58.5 + - - +
16Q ALA* 3.4 7.5 + - - +
17Q SER* 3.0 31.2 + - - -
34Z GLY* 6.3 2.5 - - - -
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Residues in contact with LEU 14 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10Q ALA* 2.9 21.3 + - + +
11Q PHE* 3.5 6.5 - - - +
13Q SER* 1.3 74.4 - - - +
15Q GLN* 1.3 61.0 + - - +
17Q SER* 4.2 4.7 - - - +
18Q ALA* 2.8 31.0 + - - +
28V MET* 3.6 14.8 - - + -
33Z VAL* 4.0 21.1 - - + -
34Z GLY* 3.8 25.4 - - - +
37Z ILE* 3.7 36.6 - - + -
38Z GLY* 3.9 7.9 - - - +
41Z LEU* 3.6 8.8 - - + +
45e PHE* 4.3 20.9 - - + -
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Residues in contact with GLN 15 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11Q PHE* 2.8 50.4 + - + +
12Q ASN* 3.4 12.3 - - - +
14Q LEU* 1.3 77.6 - - - +
16Q ALA* 1.3 57.8 + - - +
18Q ALA* 3.5 3.9 + - - +
19Q THR* 2.8 35.4 + - - +
27V ALA* 4.3 4.1 + - - +
28V MET* 3.2 37.3 - - + +
31V VAL* 3.9 24.8 - - - +
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Residues in contact with ALA 16 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12Q ASN 3.0 13.1 + - - +
13Q SER* 3.6 10.5 - - - +
15Q GLN* 1.3 74.3 - - - +
17Q SER* 1.3 64.5 + - - +
19Q THR* 3.4 6.6 + - - -
20Q GLU* 3.0 24.8 + - - +
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Residues in contact with SER 17 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5L ASP* 5.6 0.6 + - - -
13Q SER 3.0 18.0 + - - -
14Q LEU* 3.6 10.1 - - - +
15Q GLN 3.3 0.2 - - - -
16Q ALA* 1.3 76.0 - - - +
18Q ALA* 1.3 63.2 + - - +
20Q GLU* 3.3 9.9 + - - +
21Q TYR* 3.0 52.1 + - - -
38Z GLY* 5.1 6.9 - - - -
41Z LEU* 4.3 6.3 - - - -
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Residues in contact with ALA 18 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14Q LEU 2.8 20.6 + - - +
15Q GLN* 3.7 7.4 - - - +
16Q ALA 3.3 0.2 - - - -
17Q SER* 1.3 72.7 - - - +
19Q THR* 1.3 52.4 + - - +
21Q TYR* 3.1 5.3 + - - +
22Q ILE* 2.8 42.3 + - + +
28V MET* 4.6 7.4 - - - -
31V VAL* 4.5 18.2 - - + -
32V ILE* 5.8 1.3 - - + -
41Z LEU* 3.9 26.1 - - + +
48Z LYS* 5.1 0.3 + - - -
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Residues in contact with THR 19 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15Q GLN* 2.8 22.9 + - - +
16Q ALA* 3.6 7.7 - - - -
17Q SER 3.3 0.2 - - - -
18Q ALA* 1.3 75.2 - - - +
20Q GLU* 1.3 64.4 + - - +
22Q ILE* 3.3 14.6 + - + +
23Q GLY* 3.0 18.5 + - - -
31V VAL* 5.4 4.0 - - - +
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Residues in contact with GLU 20 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2L GLU* 5.1 7.4 - - - +
5L ASP* 3.8 19.4 - - - +
8L LYS* 4.2 7.4 - - - +
16Q ALA 3.0 14.2 + - - +
17Q SER* 3.5 12.0 - - - +
18Q ALA 3.2 0.2 - - - -
19Q THR* 1.3 77.8 - - - +
21Q TYR* 1.3 68.0 + - + +
23Q GLY* 3.1 5.8 + - - -
24Q TYR* 2.6 62.7 + - + +
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Residues in contact with TYR 21 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5L ASP* 2.7 25.7 + - - -
7L ALA* 3.4 29.0 - - + +
17Q SER* 3.0 32.6 + - - +
18Q ALA* 3.8 4.0 - - - +
20Q GLU* 1.3 85.1 - - + +
22Q ILE* 1.3 55.7 + - - +
24Q TYR* 3.3 23.5 + + - +
25Q ALA* 2.8 32.6 + - - +
26U TRP* 3.5 13.6 - + - -
38Z GLY* 3.3 22.0 - - - -
41Z LEU* 3.7 20.0 - - + +
42Z PHE* 3.6 25.1 - + + -
45Z PHE* 3.8 11.3 - - + +
48Z LYS* 4.6 4.3 - - - +
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Residues in contact with ILE 22 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18Q ALA* 2.8 24.7 + - + +
19Q THR* 3.4 10.3 - - + +
21Q TYR* 1.3 74.9 - - - +
23Q GLY* 1.3 60.7 + - - +
25Q ALA* 3.1 3.1 + - + +
26Q TRP* 2.9 43.9 + - + +
31V VAL* 3.5 33.7 - - + +
32V ILE* 5.6 0.7 - - - -
35V ALA* 3.6 25.4 - - + -
48Z LYS* 3.4 24.2 - - - +
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Residues in contact with GLY 23 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19Q THR 3.0 13.3 + - - -
20Q GLU* 3.1 5.8 + - - -
22Q ILE* 1.3 76.8 - - - +
24Q TYR* 1.3 60.3 + - - +
26Q TRP* 3.6 4.8 + - - +
27Q ALA* 2.9 31.6 + - - +
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Residues in contact with TYR 24 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2L GLU* 5.3 0.5 + - - -
7L ALA* 4.1 5.2 - - + -
8L LYS* 3.2 44.3 - - + +
11L PHE* 3.4 52.4 - + + -
20Q GLU* 2.6 47.8 + - + +
21Q TYR* 3.3 32.1 - + + +
22Q ILE 3.2 0.2 - - - -
23Q GLY* 1.3 76.4 - - - +
25Q ALA* 1.3 59.7 + - - +
27Q ALA* 5.6 0.2 - - + -
28Q MET* 2.8 32.6 + - - +
42Z PHE* 5.3 4.3 - + - -
45Z PHE* 3.5 10.5 - + + -
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Residues in contact with ALA 25 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21Q TYR 2.8 20.0 + - - +
22Q ILE* 3.1 6.3 + - - +
24Q TYR* 1.3 74.8 - - - +
26Q TRP* 1.3 61.0 + - - +
28Q MET* 3.8 2.0 - - - +
29Q VAL* 3.1 26.5 + - - +
39V ILE* 3.7 23.3 - - + +
45Z PHE* 3.5 14.6 - - + -
48Z LYS* 3.8 26.9 - - + -
49Z ALA* 4.7 3.9 - - - -
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Residues in contact with TRP 26 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21M TYR* 3.5 25.1 - - - -
22Q ILE* 2.9 37.5 + - + +
23Q GLY* 4.0 4.7 - - - +
25Q ALA* 1.3 73.6 - - - +
27Q ALA* 1.3 61.0 + - - +
29Q VAL* 3.3 11.6 - - + +
30Q VAL* 2.9 49.2 + - + +
35V ALA* 4.7 7.9 + - - +
38V GLY* 3.8 17.5 - - - -
39V ILE* 3.6 32.4 - - + +
42V PHE* 3.8 34.1 - + + -
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Residues in contact with ALA 27 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11L PHE* 3.7 19.3 - - + -
15L GLN* 4.4 4.7 - - - +
23Q GLY 2.9 20.6 + - - +
24Q TYR 3.7 3.8 - - - +
26Q TRP* 1.3 77.8 - - - +
28Q MET* 1.3 61.1 + - - +
30Q VAL* 3.7 5.7 - - - +
31Q VAL* 3.2 29.3 + - - +
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Residues in contact with MET 28 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11L PHE* 3.9 16.6 - - + -
14L LEU* 3.6 33.0 - - + +
15L GLN* 3.2 30.2 + - - +
18L ALA* 4.6 18.4 - - - -
24Q TYR 2.8 18.1 + - - +
25Q ALA 3.8 3.6 - - - +
27Q ALA* 1.3 77.6 - - - +
29Q VAL* 1.3 57.5 + - - +
31Q VAL* 3.1 6.8 + - - +
32Q ILE* 2.9 44.2 + - + +
37U ILE* 5.6 3.6 - - + -
41U LEU* 4.8 7.4 - - + -
45Z PHE* 4.0 8.5 - - + -
49Z ALA* 3.7 25.6 - - + -
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Residues in contact with VAL 29 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25Q ALA 3.1 14.4 + - - +
26Q TRP* 3.3 33.9 - - + +
28Q MET* 1.3 76.9 - - - +
30Q VAL* 1.3 66.1 + - + +
32Q ILE* 4.1 14.4 - - + -
33Q VAL* 2.8 49.1 + - + +
39V ILE* 4.0 26.2 - - + -
42V PHE* 4.6 5.2 - - + -
43V LYS* 4.7 12.3 - - + -
48Z LYS 4.7 7.4 - - - +
49Z ALA* 5.0 4.7 - - - +
50Z SER 6.1 1.1 - - - +
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Residues in contact with VAL 30 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26Q TRP* 2.9 46.2 + - + +
27Q ALA* 3.7 5.8 - - - +
29Q VAL* 1.3 76.4 - - + +
31Q VAL* 1.3 63.3 + - + +
33Q VAL* 4.1 3.3 - - - +
34Q GLY* 2.8 28.6 + - - -
42V PHE* 4.9 10.1 - - + -
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Residues in contact with VAL 31 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15L GLN* 3.9 23.3 - - - +
18L ALA* 4.5 15.9 - - + -
19L THR* 5.4 4.3 - - - +
22L ILE* 3.5 25.8 - - + +
27Q ALA 3.2 14.1 + - - +
28Q MET* 3.1 11.1 + - - +
30Q VAL* 1.3 81.3 - - + +
32Q ILE* 1.3 61.9 + - + +
34Q GLY* 3.9 0.8 - - - -
35Q ALA* 3.2 23.7 + - - +
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Residues in contact with ILE 32 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18L ALA* 5.8 1.1 - - + -
22L ILE* 5.6 0.7 - - - -
28Q MET* 2.9 36.2 + - + +
29Q VAL* 3.7 10.8 - - + +
31Q VAL* 1.3 79.5 - - + +
33Q VAL* 1.3 61.0 + - + +
35Q ALA* 4.0 2.5 - - - +
36Q THR* 2.6 46.0 + - - +
41U LEU* 4.4 22.7 - - + -
44U LYS* 5.0 25.6 - - + +
48U LYS* 4.8 6.3 - - - +
49Z ALA 3.4 25.4 - - - +
50Z SER 5.6 1.8 - - - +
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Residues in contact with VAL 33 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29Q VAL* 2.8 34.3 + - + +
30Q VAL* 4.1 1.6 - - - +
32Q ILE* 1.3 72.6 - - + +
34Q GLY* 1.3 61.5 + - - +
36Q THR* 4.2 5.8 - - - -
37Q ILE* 2.8 42.4 + - + +
42V PHE* 3.7 30.7 - - + -
43V LYS* 5.7 4.5 - - + -
45V PHE* 5.3 2.5 - - + -
46V THR* 3.5 32.1 - - + +
----------------------------------------------------------
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Residues in contact with GLY 34 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30Q VAL 2.8 19.7 + - - -
31Q VAL* 3.9 1.8 - - - -
33Q VAL* 1.3 77.6 - - - +
35Q ALA* 1.3 56.1 + - - +
37Q ILE* 4.7 0.4 - - - +
38Q GLY* 2.9 27.2 + - - -
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Residues in contact with ALA 35 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22L ILE* 3.6 43.7 - - + -
26L TRP* 4.7 8.7 + - - +
31Q VAL 3.2 12.6 + - - +
32Q ILE 4.0 1.8 - - - +
34Q GLY* 1.3 72.8 - - - +
36Q THR* 1.3 66.9 + - - +
38Q GLY* 4.9 0.4 - - - -
39Q ILE* 3.0 31.7 + - + +
48U LYS* 4.0 11.2 - - + +
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Residues in contact with THR 36 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32Q ILE* 2.6 36.4 + - - +
33Q VAL* 3.8 5.4 - - - -
35Q ALA* 1.3 77.8 - - - +
37Q ILE* 1.3 68.8 + - + +
39Q ILE* 3.7 3.3 - - - +
40Q LYS* 3.1 29.8 + - - +
44U LYS* 5.8 2.1 - - - +
47U SER* 5.9 2.5 - - - +
48U LYS* 3.4 31.4 - - + +
----------------------------------------------------------
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Residues in contact with ILE 37 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28M MET* 5.6 11.2 - - + -
33Q VAL* 2.8 39.2 + - + +
34Q GLY* 4.7 0.4 - - - +
36Q THR* 1.3 78.2 - - + +
38Q GLY* 1.3 56.4 + - - +
40Q LYS* 3.3 31.8 - - + +
41Q LEU* 2.7 52.6 + - + +
45V PHE* 6.1 3.6 - - + -
46V THR* 4.0 29.4 - - + +
49V ALA* 6.1 5.6 - - + -
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Residues in contact with GLY 38 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26L TRP* 3.8 14.4 - - - -
34Q GLY 2.9 20.9 + - - -
35Q ALA 3.8 0.9 - - - -
37Q ILE* 1.3 77.0 - - - +
39Q ILE* 1.3 56.2 + - - +
41Q LEU* 3.3 14.1 + - - +
42Q PHE* 3.0 24.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 39 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25L ALA* 3.7 40.6 - - + +
26L TRP* 3.6 35.7 - - + +
29L VAL* 4.0 22.9 - - + -
35Q ALA* 3.0 22.5 + - + +
36Q THR 3.7 3.8 - - - +
38Q GLY* 1.3 71.9 - - - +
40Q LYS* 1.3 61.0 + - - +
42Q PHE* 3.0 4.2 + - + +
43Q LYS* 2.8 33.7 + - + +
48U LYS* 3.6 33.0 - - + +
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Residues in contact with LYS 40 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36Q THR* 3.1 19.0 + - - +
37Q ILE* 3.3 32.3 - - + +
39Q ILE* 1.3 77.9 - - - +
41Q LEU* 1.3 56.6 + - + +
43Q LYS* 3.1 21.5 + - + +
44Q LYS* 2.8 45.6 + - + +
49V ALA 5.4 1.8 - - - +
50V SER* 3.6 35.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 41 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28M MET* 4.8 16.8 - - + -
32M ILE* 4.4 28.0 - - + -
37Q ILE* 2.7 40.4 + - + +
38Q GLY* 3.5 10.8 - - - +
39Q ILE 3.2 0.2 - - - -
40Q LYS* 1.3 74.3 - - + +
42Q PHE* 1.3 57.8 + - - +
44Q LYS* 3.1 13.9 + - + +
45Q PHE* 2.9 25.3 + - - +
48Q LYS* 5.3 2.3 + - - -
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Residues in contact with PHE 42 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26L TRP* 3.8 30.7 - + + -
29L VAL* 4.6 14.6 - - + -
30L VAL* 4.9 10.8 - - + -
33L VAL* 3.7 42.6 - - + -
38Q GLY 3.0 12.4 + - - +
39Q ILE 3.0 9.3 + - - +
41Q LEU* 1.3 73.9 - - - +
43Q LYS* 1.3 63.5 + - - +
45Q PHE* 3.1 47.3 - + + +
46Q THR* 3.2 10.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 43 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29L VAL* 4.7 12.6 - - + -
33L VAL* 5.7 3.1 - - + -
39Q ILE* 2.8 29.9 + - + +
40Q LYS* 3.2 21.8 - - + +
42Q PHE* 1.3 76.5 - - + +
44Q LYS* 1.3 63.9 + - + +
46Q THR* 2.5 27.0 + - - +
47Q SER* 3.1 9.5 + - - -
48U LYS 5.3 0.9 - - - +
50U SER* 2.8 35.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 44 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32M ILE* 5.0 24.7 - - + +
36M THR* 5.8 2.5 - - - +
40Q LYS* 2.8 32.7 + - + +
41Q LEU* 3.3 22.4 - - + +
43Q LYS* 1.3 74.1 - - + +
45Q PHE* 1.3 61.0 + - - +
47Q SER* 3.3 10.3 + - - -
48Q LYS* 2.8 45.8 + - + +
50V SER* 4.0 20.3 + - - +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33L VAL* 5.3 2.2 - - + -
37L ILE* 6.1 4.3 - - + -
41Q LEU 2.9 12.6 + - - +
42Q PHE* 3.1 43.5 - + + +
44Q LYS* 1.3 76.5 - - - +
46Q THR* 1.3 69.5 + - + +
48Q LYS* 3.1 15.8 + - + +
49Q ALA* 2.8 52.3 + - + +
----------------------------------------------------------
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Residues in contact with THR 46 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33L VAL* 3.5 40.7 - - + +
37L ILE* 4.0 21.2 - - + +
42Q PHE* 3.2 13.4 + - + +
43Q LYS* 2.5 24.8 + - - +
45Q PHE* 1.3 89.2 - - + +
47Q SER* 1.3 52.6 + - - +
49Q ALA* 3.9 5.8 - - - +
50Q SER* 2.6 32.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 47 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36M THR* 5.9 2.1 - - - +
43Q LYS 3.1 8.2 + - - -
44Q LYS* 3.4 17.0 - - - -
46Q THR* 1.3 79.9 + - - +
48Q LYS* 1.3 64.7 + - - +
49Q ALA 3.1 0.2 - - - -
50Q SER* 3.0 25.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32M ILE* 5.1 5.8 + - - +
35M ALA* 4.0 18.8 - - + +
36M THR* 3.4 50.4 + - + +
39M ILE* 3.6 41.1 - - + +
43M LYS* 5.3 1.6 - - - +
41Q LEU 5.3 1.8 + - - -
44Q LYS* 2.8 39.0 + - + +
45Q PHE* 3.7 13.1 - - + +
47Q SER* 1.3 74.0 - - - +
49Q ALA* 1.3 59.4 + - - +
50Q SER* 3.1 5.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain Q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37L ILE* 6.1 6.5 - - + -
40L LYS* 5.4 2.0 - - - +
44L LYS* 5.9 1.0 - - - -
45Q PHE* 2.8 40.0 + - + +
46Q THR* 3.9 6.7 - - - +
47Q SER 3.1 0.2 - - - -
48Q LYS* 1.3 76.0 - - - +
50Q SER* 1.3 62.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il