Contacts of the helix formed by residues 5 - 49 (chain S) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain S).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1S ALA 3.9 5.6 + - - +
3S GLY 3.3 5.6 - - - +
4S ASP* 1.3 76.2 - - - +
6S PRO* 1.3 67.4 - - - +
7S ALA* 2.8 20.8 + - - +
8S LYS* 2.8 36.0 + - + +
9S ALA* 3.3 4.9 + - - +
17X SER* 5.6 0.5 + - - -
20X GLU* 3.8 15.1 - - - +
21X TYR* 2.7 33.3 + - - -
26b TRP* 4.3 5.4 - - - -
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Residues in contact with PRO 6 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4S ASP 3.2 11.2 - - - +
5S ASP* 1.3 90.8 - - - +
7S ALA* 1.3 55.7 + - - +
9S ALA* 3.2 10.9 + - + +
10S ALA* 2.9 29.1 + - - +
26b TRP* 3.7 42.0 - - + +
27b ALA* 5.3 1.1 - - - +
30b VAL* 3.7 17.8 - - + +
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Residues in contact with ALA 7 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5S ASP* 2.8 14.2 + - - +
6S PRO* 1.3 78.7 - - - +
8S LYS* 1.3 56.3 + - - +
10S ALA* 3.4 2.5 + - - +
11S PHE* 2.8 29.5 + - - +
21X TYR* 3.4 32.8 - - + +
24X TYR* 4.1 2.4 - - - -
26b TRP* 3.7 11.2 - - + -
30b VAL* 5.0 0.2 - - - -
42g PHE* 3.5 29.6 - - + -
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Residues in contact with LYS 8 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2S GLU* 2.8 36.2 + - - +
3S GLY* 4.0 23.6 - - - +
5S ASP* 2.8 16.4 + - + +
7S ALA* 1.3 76.3 - - - +
9S ALA* 1.3 59.4 + - - +
11S PHE* 3.5 1.1 - - + +
12S ASN* 2.8 51.3 + - - +
20X GLU* 4.2 6.1 - - - +
24X TYR* 3.2 31.3 - - + +
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Residues in contact with ALA 9 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3S GLY 6.1 0.9 - - - +
5S ASP 3.3 4.6 + - - +
6S PRO* 3.2 15.3 + - + +
8S LYS* 1.3 79.3 - - - +
10S ALA* 1.3 60.2 + - - +
12S ASN* 4.0 6.9 - - - +
13S SER* 2.8 30.3 + - - -
30b VAL* 5.5 3.4 - - + -
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Residues in contact with ALA 10 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6S PRO 2.9 16.3 + - - +
7S ALA 3.6 0.2 - - - +
9S ALA* 1.3 75.0 - - - +
11S PHE* 1.3 64.7 + - - +
13S SER* 3.2 7.6 + - - -
14S LEU* 2.9 32.7 + - + +
30b VAL* 3.9 29.7 - - + +
33b VAL* 5.3 1.3 - - + -
34b GLY* 5.7 2.4 - - - +
42g PHE* 3.6 27.1 - - + -
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Residues in contact with PHE 11 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7S ALA 2.8 22.1 + - - +
8S LYS* 3.5 3.4 - - + +
10S ALA* 1.3 72.7 - - - +
12S ASN* 1.3 72.4 + - - +
14S LEU* 3.1 11.2 + - - +
15S GLN* 2.8 67.8 + - + +
24X TYR* 3.4 68.6 - + + -
27X ALA* 3.7 21.8 - - + -
28X MET* 3.9 5.8 - - + -
42g PHE* 4.9 0.4 - - - -
45g PHE* 3.7 16.8 - + + -
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Residues in contact with ASN 12 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8S LYS* 2.8 45.9 + - - +
9S ALA* 4.0 6.0 - - - +
11S PHE* 1.3 90.9 - - - +
13S SER* 1.3 58.2 + - - +
15S GLN* 3.2 9.0 + - - +
16S ALA* 3.0 27.9 + - - +
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Residues in contact with SER 13 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9S ALA 2.8 22.4 + - - -
10S ALA* 3.4 7.6 - - - -
11S PHE 3.2 0.2 - - - -
12S ASN* 1.3 77.4 - - - +
14S LEU* 1.3 59.2 + - - +
16S ALA* 3.4 7.6 + - - +
17S SER* 3.0 30.7 + - - -
34b GLY* 6.3 2.2 - - - -
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Residues in contact with LEU 14 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10S ALA* 2.9 21.7 + - + +
11S PHE* 3.1 6.3 + - - +
13S SER* 1.3 75.4 - - - +
15S GLN* 1.3 60.9 + - - +
17S SER* 4.2 4.9 - - - +
18S ALA* 2.8 31.5 + - - +
28X MET* 3.6 15.5 - - + -
33b VAL* 4.0 21.1 - - + -
34b GLY* 3.8 26.0 - - - +
37b ILE* 3.7 37.0 - - + -
38b GLY* 3.9 7.9 - - - +
41b LEU* 3.6 8.8 - - + +
45g PHE* 4.3 20.9 - - + -
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Residues in contact with GLN 15 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11S PHE* 2.8 50.7 + - + +
12S ASN* 3.2 12.5 + - - +
14S LEU* 1.3 77.0 - - - +
16S ALA* 1.3 55.6 + - - +
18S ALA* 3.7 3.7 - - - +
19S THR* 2.8 34.7 + - - +
27X ALA* 4.3 4.3 + - - +
28X MET* 3.2 37.2 - - - +
31X VAL* 3.9 24.7 - - - +
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Residues in contact with ALA 16 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12S ASN 3.0 13.3 + - - +
13S SER* 3.6 10.5 - - - +
15S GLN* 1.3 75.0 - - - +
17S SER* 1.3 65.1 + - - +
19S THR* 3.4 6.2 + - - -
20S GLU* 3.0 24.4 + - - +
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Residues in contact with SER 17 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5N ASP* 5.6 0.5 + - - -
13S SER 3.0 17.6 + - - -
14S LEU* 3.6 10.3 - - - +
15S GLN 3.3 0.2 - - - -
16S ALA* 1.3 75.8 - - - +
18S ALA* 1.3 62.9 + - - +
20S GLU* 3.3 10.3 + - - +
21S TYR* 3.0 50.5 + - - -
38b GLY* 5.1 7.1 - - - -
41b LEU* 4.3 5.8 - - - -
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Residues in contact with ALA 18 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14S LEU 2.8 20.8 + - - +
15S GLN* 3.7 7.4 - - - +
17S SER* 1.3 73.8 - - - +
19S THR* 1.3 52.3 + - - +
21S TYR* 3.1 5.9 + - - +
22S ILE* 2.8 42.8 + - + +
28X MET* 4.6 7.0 - - - -
31X VAL* 4.5 18.4 - - + -
32X ILE* 5.8 1.3 - - + -
41b LEU* 3.9 25.1 - - + +
48b LYS* 5.1 0.3 + - - -
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Residues in contact with THR 19 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15S GLN* 2.8 23.2 + - - -
16S ALA* 3.6 7.2 - - - -
18S ALA* 1.3 75.8 - - - +
20S GLU* 1.3 63.4 + - - +
22S ILE* 3.3 14.5 + - + +
23S GLY* 3.0 18.5 + - - -
31X VAL* 5.4 3.5 - - - +
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Residues in contact with GLU 20 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2N GLU* 5.1 8.0 - - - +
5N ASP* 3.8 19.3 - - - +
8N LYS* 4.2 7.6 - - - +
16S ALA 3.0 14.3 + - - +
17S SER* 3.5 11.9 + - - +
19S THR* 1.3 77.3 - - - +
21S TYR* 1.3 68.1 + - + +
23S GLY* 3.1 5.5 + - - -
24S TYR* 2.6 64.0 + - + +
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Residues in contact with TYR 21 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5N ASP* 2.7 25.4 + - - -
7N ALA* 3.4 29.0 - - + +
17S SER* 3.0 31.6 + - - +
18S ALA* 3.8 4.0 - - - +
20S GLU* 1.3 84.6 - - - +
22S ILE* 1.3 55.6 + - - +
24S TYR* 3.3 22.5 + + - +
25S ALA* 2.8 33.1 + - - +
26W TRP* 3.5 13.0 - - - -
38b GLY* 3.3 21.9 - - - -
41b LEU* 3.7 21.8 - - + +
42b PHE* 3.6 24.0 - + + -
45b PHE* 3.8 11.9 - - + +
48b LYS* 4.6 4.5 - - - +
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Residues in contact with ILE 22 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18S ALA* 2.8 25.1 + - + +
19S THR* 3.4 11.4 - - + +
21S TYR* 1.3 74.7 - - - +
23S GLY* 1.3 58.9 + - - +
25S ALA* 3.1 3.2 + - + +
26S TRP* 2.9 44.9 + - + +
31X VAL* 3.5 33.7 - - + +
32X ILE* 5.6 0.4 - - - -
35X ALA* 3.6 24.9 - - + -
48b LYS* 3.4 23.1 - - - +
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Residues in contact with GLY 23 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19S THR 3.0 13.5 + - - -
20S GLU 3.1 6.0 + - - -
22S ILE* 1.3 76.4 - - - +
24S TYR* 1.3 60.5 + - - +
26S TRP* 4.0 4.4 - - - +
27S ALA* 2.9 31.9 + - - +
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Residues in contact with TYR 24 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2N GLU* 5.3 0.5 + - - -
7N ALA* 4.1 4.7 - - + -
8N LYS* 3.2 44.6 - - - +
11N PHE* 3.4 53.8 - + + -
20S GLU* 2.6 47.4 + - + +
21S TYR* 3.3 31.4 - + - +
23S GLY* 1.3 76.7 - - - +
25S ALA* 1.3 58.9 + - - +
27S ALA* 5.6 0.2 - - + -
28S MET* 2.8 32.9 + - - +
42b PHE* 5.3 4.9 - + - -
45b PHE* 3.5 10.3 - + + -
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Residues in contact with ALA 25 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21S TYR 2.8 18.7 + - - +
22S ILE* 3.1 6.7 + - - +
24S TYR* 1.3 73.7 - - - +
26S TRP* 1.3 62.0 + - - +
28S MET* 3.8 1.6 - - - +
29S VAL* 3.1 26.0 + - - +
39X ILE* 3.6 22.2 - - + +
45b PHE* 3.5 15.2 - - + -
48b LYS* 3.8 28.3 - - + -
49b ALA* 4.7 3.9 - - - -
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Residues in contact with TRP 26 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21J TYR* 3.5 26.2 - - - -
22S ILE* 2.9 38.0 + - + +
23S GLY* 4.0 4.9 - - - +
25S ALA* 1.3 74.0 - - - +
27S ALA* 1.3 60.6 + - - +
29S VAL* 3.3 13.7 - - + +
30S VAL* 2.9 48.1 + - + +
35X ALA* 4.7 7.4 + - - +
38X GLY* 3.8 16.6 - - - -
39X ILE* 3.6 32.1 - - + +
42X PHE* 3.8 35.4 - + + -
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Residues in contact with ALA 27 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11N PHE* 3.7 18.8 - - + -
15N GLN* 4.4 4.7 - - - +
23S GLY 2.9 20.4 + - - +
24S TYR* 3.7 4.3 - - + +
26S TRP* 1.3 76.1 - - - +
28S MET* 1.3 62.7 + - - +
30S VAL* 3.6 6.1 + - - +
31S VAL* 3.2 29.1 + - - +
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Residues in contact with MET 28 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11N PHE* 3.9 16.2 - - + -
14N LEU* 3.6 33.0 - - + +
15N GLN* 3.2 31.4 + - - +
18N ALA* 4.6 17.0 - - - -
24S TYR 2.8 18.4 + - - +
25S ALA 3.8 3.6 - - - +
27S ALA* 1.3 77.0 - - - +
29S VAL* 1.3 57.6 + - - +
31S VAL* 3.1 6.8 + - - +
32S ILE* 2.9 44.9 + - + +
37W ILE* 5.6 4.7 - - + -
41W LEU* 4.9 7.0 - - + -
45b PHE* 4.0 9.6 - - + -
49b ALA* 3.7 24.9 - - + -
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Residues in contact with VAL 29 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25S ALA 3.1 14.6 + - - +
26S TRP* 3.3 34.5 - - + +
28S MET* 1.3 76.8 - - - +
30S VAL* 1.3 65.9 + - + +
32S ILE* 3.7 15.0 - - + +
33S VAL* 2.8 48.5 + - + +
39X ILE* 4.0 26.0 - - + -
42X PHE* 4.6 4.9 - - + -
43X LYS* 4.7 12.1 - - + -
48b LYS 4.6 7.2 - - - +
49b ALA* 5.0 4.5 - - - +
50b SER 6.1 1.6 - - - +
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Residues in contact with VAL 30 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26S TRP* 2.9 45.8 + - + +
27S ALA* 3.7 7.2 - - - +
29S VAL* 1.3 76.1 - - + +
31S VAL* 1.3 63.6 + - + +
33S VAL* 4.1 3.5 - - - +
34S GLY* 2.8 28.1 + - - -
42X PHE* 4.9 9.9 - - + -
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Residues in contact with VAL 31 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15N GLN* 3.9 23.1 - - - +
18N ALA* 4.5 16.6 - - + -
19N THR* 5.4 4.3 - - - +
22N ILE* 3.5 25.4 - - + +
27S ALA 3.2 14.6 + - - +
28S MET* 3.1 10.2 + - - +
30S VAL* 1.3 80.5 - - + +
32S ILE* 1.3 63.9 + - + +
34S GLY* 3.9 1.0 - - - -
35S ALA* 3.2 23.7 + - - +
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Residues in contact with ILE 32 (chain S).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18N ALA* 5.8 1.1 - - + -
22N ILE* 5.6 1.1 - - - -
28S MET* 2.9 36.3 + - + +
29S VAL* 3.7 11.4 - - + +
30S VAL 3.3 0.2 - - - -
31S VAL* 1.3 79.8 - - + +
33S VAL* 1.3 59.8 + - + +
35S ALA* 4.0 2.3 - - - +
36S THR* 2.6 45.3 + - - +
41W LEU* 4.4 22.9 - - + -
44W LYS* 5.0 25.8 - - + +
48W LYS* 4.8 5.7 - - - +
49b ALA 3.4 25.1 - - - +
50b SER 5.6 2.0 - - - +
----------------------------------------------------------
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Residues in contact with VAL 33 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29S VAL* 2.8 33.5 + - + +
30S VAL 4.1 1.1 - - - +
32S ILE* 1.3 74.1 - - + +
34S GLY* 1.3 62.3 + - - +
36S THR* 4.2 5.8 - - - -
37S ILE* 2.8 41.6 + - + +
42X PHE* 3.7 30.7 - - + -
43X LYS* 5.7 4.7 - - + -
45X PHE* 5.3 2.9 - - + -
46X THR* 3.5 32.8 - - + +
----------------------------------------------------------
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Residues in contact with GLY 34 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30S VAL 2.8 19.2 + - - -
31S VAL* 3.9 1.6 - - - -
33S VAL* 1.3 78.1 - - - +
35S ALA* 1.3 56.3 + - - +
37S ILE* 4.7 0.4 - - - +
38S GLY* 2.9 27.7 + - - -
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Residues in contact with ALA 35 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22N ILE* 3.6 43.7 - - + -
26N TRP* 4.8 8.3 - - - +
31S VAL 3.2 13.2 + - - +
32S ILE 4.0 2.2 - - - +
34S GLY* 1.3 71.8 - - - +
36S THR* 1.3 65.7 + - - +
38S GLY* 3.8 0.4 - - - -
39S ILE* 3.0 31.4 + - + +
48W LYS* 4.0 11.4 - - + +
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Residues in contact with THR 36 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32S ILE* 2.6 37.1 + - - +
33S VAL* 3.8 4.7 - - - -
35S ALA* 1.3 77.8 - - - +
37S ILE* 1.3 68.6 + - + +
39S ILE* 3.5 3.5 + - - +
40S LYS* 3.1 30.0 + - - +
44W LYS* 5.8 2.6 - - - +
47W SER* 5.9 2.0 - - - +
48W LYS* 3.4 30.5 - - + +
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Residues in contact with ILE 37 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28J MET* 5.6 10.5 - - + -
33S VAL* 2.8 39.2 + - + +
34S GLY* 4.7 0.7 - - - +
36S THR* 1.3 77.7 - - + +
38S GLY* 1.3 56.6 + - - +
40S LYS* 3.3 32.2 - - + +
41S LEU* 2.7 52.7 + - + +
45X PHE* 6.1 3.6 - - + -
46X THR* 4.0 29.4 - - + +
49X ALA* 6.1 4.7 - - + -
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Residues in contact with GLY 38 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26N TRP* 3.8 14.7 - - - -
34S GLY 2.9 20.5 + - - -
35S ALA 3.8 0.7 - - - -
37S ILE* 1.3 78.3 - - - +
39S ILE* 1.3 55.6 + - - +
41S LEU* 3.3 13.8 + - - +
42S PHE* 3.0 25.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 39 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25N ALA* 3.7 40.4 - - + +
26N TRP* 3.6 36.5 - - + +
29N VAL* 4.0 23.1 - - + -
35S ALA* 3.0 22.3 + - + +
36S THR* 3.7 3.6 - - - +
38S GLY* 1.3 72.0 - - - +
40S LYS* 1.3 61.6 + - - +
42S PHE* 3.0 3.7 + - + +
43S LYS* 2.8 34.0 + - + +
48W LYS* 3.6 33.0 - - + +
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Residues in contact with LYS 40 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36S THR* 3.1 20.5 + - - +
37S ILE* 3.3 33.2 - - + +
39S ILE* 1.3 76.5 - - - +
41S LEU* 1.3 58.1 + - + +
43S LYS* 3.1 21.9 + - + +
44S LYS* 2.9 44.8 + - + +
49X ALA 5.4 2.0 - - - +
50X SER* 3.6 34.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 41 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28J MET* 4.9 15.7 - - + -
32J ILE* 4.4 28.5 - - + -
37S ILE* 2.7 40.8 + - + +
38S GLY* 3.5 9.9 - - - +
40S LYS* 1.3 72.7 - - + +
42S PHE* 1.3 57.6 + - - +
44S LYS* 3.1 14.4 + - + +
45S PHE* 2.9 25.3 + - - +
48S LYS* 5.3 1.9 + - - -
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Residues in contact with PHE 42 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26N TRP* 3.8 30.3 - + + -
29N VAL* 4.6 15.0 - - + -
30N VAL* 4.9 11.0 - - + -
33N VAL* 3.7 42.4 - - + -
38S GLY 3.0 12.4 + - - +
39S ILE 3.0 10.0 + - - +
41S LEU* 1.3 74.7 - - - +
43S LYS* 1.3 63.7 + - - +
45S PHE* 3.1 46.7 - + + +
46S THR* 3.2 10.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 43 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29N VAL* 4.7 12.8 - - + -
33N VAL* 5.7 4.0 - - + -
39S ILE* 2.8 28.8 + - + +
40S LYS* 3.2 23.3 - - + +
42S PHE* 1.3 75.7 - - + +
44S LYS* 1.3 63.0 + - + +
46S THR* 2.5 27.0 + - - +
47S SER* 3.1 9.2 + - - -
48W LYS 5.3 0.7 - - - +
50W SER* 2.8 36.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 44 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32J ILE* 5.0 24.9 - - + +
36J THR* 5.8 2.2 - - - +
40S LYS* 2.9 32.7 + - + +
41S LEU* 3.1 22.4 + - + +
43S LYS* 1.3 74.7 - - + +
45S PHE* 1.3 60.4 + - - +
47S SER* 3.3 10.2 + - - -
48S LYS* 2.8 44.8 + - + +
50X SER* 4.0 21.4 + - - +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33N VAL* 5.3 2.7 - - + -
37N ILE* 6.1 4.3 - - + -
41S LEU 2.9 12.4 + - - +
42S PHE* 3.1 44.0 - + + +
44S LYS* 1.3 76.8 - - - +
46S THR* 1.3 70.0 + - + +
48S LYS* 3.1 15.4 + - + +
49S ALA* 2.8 51.4 + - + +
----------------------------------------------------------
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Residues in contact with THR 46 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33N VAL* 3.5 40.8 - - + +
37N ILE* 4.0 20.6 - - + +
42S PHE* 3.2 13.2 + - + +
43S LYS* 2.5 24.8 + - - +
45S PHE* 1.3 88.0 - - + +
47S SER* 1.3 51.4 + - - +
49S ALA* 3.6 7.2 + - - +
50S SER* 2.6 33.4 + - - -
----------------------------------------------------------
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Residues in contact with SER 47 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36J THR* 5.9 2.3 - - - +
43S LYS 3.1 8.8 + - - -
44S LYS* 3.4 16.6 - - - -
46S THR* 1.3 80.1 + - - +
48S LYS* 1.3 65.9 + - - +
49S ALA 3.1 0.2 - - - -
50S SER* 3.0 25.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32J ILE* 5.1 6.4 + - - +
35J ALA* 4.0 19.0 - - + +
36J THR* 3.4 50.9 + - + +
39J ILE* 3.6 40.1 - - + +
43J LYS* 5.3 1.7 - - - +
41S LEU 5.3 1.6 + - - -
44S LYS* 2.8 39.0 + - + +
45S PHE* 3.1 12.4 + - + +
47S SER* 1.3 76.1 - - - +
49S ALA* 1.3 59.4 + - - +
50S SER* 3.1 5.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain S).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37N ILE* 6.1 6.5 - - + -
40N LYS* 5.4 2.3 - - - +
44N LYS* 5.9 1.2 - - - -
45S PHE* 2.8 39.9 + - + +
46S THR* 3.9 7.2 - - - +
47S SER 3.1 0.4 - - - -
48S LYS* 1.3 75.5 - - - +
50S SER* 1.3 62.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il