Contacts of the helix formed by residues 5 - 49 (chain T) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain T).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1T ALA 3.9 5.2 + - - +
3T GLY 3.3 5.1 - - - +
4T ASP* 1.3 76.5 - - - +
6T PRO* 1.3 72.3 - - - +
7T ALA* 2.8 21.5 + - - +
8T LYS* 2.8 30.1 + - + +
9T ALA* 3.3 5.2 + - - +
17Y SER* 5.6 0.7 + - - -
20Y GLU* 3.8 15.2 - - - +
21Y TYR* 2.7 32.6 + - - -
26h TRP* 4.3 6.0 - - - -
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Residues in contact with PRO 6 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4T ASP 3.2 11.0 - - - +
5T ASP* 1.3 90.3 - - - +
7T ALA* 1.3 56.5 + - - +
9T ALA* 3.2 11.7 + - + +
10T ALA* 2.9 28.8 + - - +
26h TRP* 3.7 43.1 - - + +
27h ALA* 5.9 0.7 - - - -
30h VAL* 3.7 17.0 - - + +
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Residues in contact with ALA 7 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D PHE* 3.5 29.8 - - + -
5T ASP* 2.8 15.0 + - - +
6T PRO* 1.3 79.4 - - - +
8T LYS* 1.3 55.5 + - - +
10T ALA* 3.4 1.9 + - - +
11T PHE* 2.8 30.3 + - - +
21Y TYR* 3.4 32.5 - - + +
24Y TYR* 4.1 2.4 - - - -
26h TRP* 3.7 11.0 - - + -
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Residues in contact with LYS 8 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2T GLU* 2.8 35.3 + - - +
3T GLY* 4.0 24.6 - - - +
5T ASP* 2.8 16.6 + - + +
7T ALA* 1.3 77.4 - - - +
9T ALA* 1.3 60.3 + - - +
11T PHE* 3.2 0.9 + - - +
12T ASN* 2.8 51.6 + - - +
20Y GLU* 4.2 6.1 - - - +
24Y TYR* 3.2 32.6 - - + +
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Residues in contact with ALA 9 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3T GLY 6.1 1.1 - - - +
5T ASP 3.3 4.2 + - - +
6T PRO* 3.2 14.5 + - + +
8T LYS* 1.3 80.2 - - - +
10T ALA* 1.3 60.4 + - - +
12T ASN* 3.6 6.9 + - - +
13T SER* 2.8 29.6 + - - -
30h VAL* 5.5 2.7 - - + -
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Residues in contact with ALA 10 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D PHE* 3.6 27.4 - - + -
6T PRO 2.9 16.5 + - - +
7T ALA 3.6 0.4 - - - +
9T ALA* 1.3 73.9 - - - +
11T PHE* 1.3 64.1 + - - +
13T SER* 3.2 7.6 + - - -
14T LEU* 2.9 32.4 + - + +
30h VAL* 3.9 28.6 - - + +
33h VAL* 5.3 2.0 - - + -
34h GLY* 5.7 2.6 - - - +
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Residues in contact with PHE 11 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42D PHE* 4.9 0.4 - - - -
45D PHE* 3.7 15.0 - + + -
7T ALA 2.8 21.2 + - - +
8T LYS* 3.5 3.4 - - + +
10T ALA* 1.3 73.3 - - - +
12T ASN* 1.3 73.3 + - - +
14T LEU* 3.1 11.6 + - - +
15T GLN* 2.8 67.0 + - + +
24Y TYR* 3.4 69.5 - + + -
27Y ALA* 3.7 20.6 - - + -
28Y MET* 3.9 6.1 - - + -
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Residues in contact with ASN 12 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8T LYS* 2.8 46.2 + - - +
9T ALA* 4.0 6.2 - - - +
11T PHE* 1.3 90.7 - - - +
13T SER* 1.3 57.9 + - - +
15T GLN* 3.2 8.6 + - - +
16T ALA* 3.0 28.2 + - - +
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Residues in contact with SER 13 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9T ALA 2.8 22.6 + - - -
10T ALA* 3.4 8.2 - - - -
12T ASN* 1.3 78.2 - - - +
14T LEU* 1.3 58.4 + - - +
16T ALA* 3.4 7.5 + - - +
17T SER* 3.0 31.0 + - - -
34h GLY* 6.3 2.5 - - - -
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Residues in contact with LEU 14 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45D PHE* 4.3 20.6 - - + -
10T ALA* 2.9 22.1 + - + +
11T PHE* 3.5 6.3 - - - +
13T SER* 1.3 74.8 - - - +
15T GLN* 1.3 60.9 + - - +
17T SER* 4.2 4.9 - - - +
18T ALA* 2.8 31.4 + - - +
28Y MET* 3.6 15.2 - - + +
33h VAL* 4.0 21.3 - - + -
34h GLY* 3.8 26.5 - - - +
37h ILE* 3.7 36.6 - - + -
38h GLY* 3.9 7.6 - - - +
41h LEU* 3.6 8.4 - - + +
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Residues in contact with GLN 15 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11T PHE* 2.8 48.9 + - + +
12T ASN* 3.4 12.6 - - - +
14T LEU* 1.3 76.5 - - - +
16T ALA* 1.3 57.2 + - - +
18T ALA* 3.5 4.1 + - - +
19T THR* 2.8 35.0 + - - +
27Y ALA* 4.3 4.3 + - - +
28Y MET* 3.2 37.3 - - - +
31Y VAL* 3.9 24.7 - - - +
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Residues in contact with ALA 16 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12T ASN 3.0 13.1 + - - +
13T SER* 3.6 10.5 - - - +
15T GLN* 1.3 74.8 - - - +
17T SER* 1.3 64.2 + - - +
19T THR* 3.4 6.8 + - - -
20T GLU* 3.0 24.4 + - - +
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Residues in contact with SER 17 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5O ASP* 5.6 0.7 + - - -
13T SER 3.0 17.9 + - - -
14T LEU* 3.6 9.8 - - - +
16T ALA* 1.3 77.0 - - - +
18T ALA* 1.3 64.2 + - - +
20T GLU* 3.3 9.9 + - - +
21T TYR* 3.0 49.5 + - - -
38h GLY* 5.1 7.2 - - - -
41h LEU* 4.3 6.1 - - - -
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Residues in contact with ALA 18 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14T LEU 2.8 21.5 + - - +
15T GLN* 3.7 7.6 - - - +
16T ALA 3.3 0.2 - - - -
17T SER* 1.3 74.4 - - - +
19T THR* 1.3 51.5 + - - +
21T TYR* 3.1 6.2 + - - +
22T ILE* 2.8 43.4 + - + +
28Y MET* 4.6 7.0 - - - -
31Y VAL* 4.5 17.9 - - + -
32Y ILE* 5.8 1.3 - - + -
41h LEU* 3.9 25.5 - - + +
48h LYS* 5.1 0.2 + - - -
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Residues in contact with THR 19 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15T GLN* 2.8 22.4 + - - -
16T ALA* 3.6 7.7 - - - -
17T SER 3.3 0.2 - - - -
18T ALA* 1.3 75.2 - - - +
20T GLU* 1.3 62.6 + - - +
22T ILE* 3.3 15.6 + - + +
23T GLY* 3.0 19.1 + - - -
31Y VAL* 5.5 3.5 - - - +
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Residues in contact with GLU 20 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2O GLU* 5.1 8.6 - - - +
5O ASP* 3.8 19.9 - - - +
8O LYS* 4.2 7.4 - - - +
16T ALA 3.0 14.2 + - - +
17T SER* 3.5 12.1 - - - +
18T ALA 3.2 0.2 - - - -
19T THR* 1.3 76.8 - - - +
21T TYR* 1.3 67.2 + - + +
23T GLY* 3.1 5.1 + - - -
24T TYR* 2.6 62.9 + - + +
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Residues in contact with TYR 21 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5O ASP* 2.7 25.7 + - - -
7O ALA* 3.4 28.2 - - + +
17T SER* 3.0 33.1 + - - +
18T ALA* 3.8 4.0 - - - +
20T GLU* 1.3 85.7 - - + +
22T ILE* 1.3 56.0 + - - +
24T TYR* 3.3 23.2 + + - +
25T ALA* 2.8 32.7 + - - +
26c TRP* 3.5 13.6 - + - -
38h GLY* 3.3 21.7 - - - -
41h LEU* 3.7 21.1 - - + +
42h PHE* 3.6 24.9 - + + -
45h PHE* 3.8 11.7 - - + +
48h LYS* 4.5 4.8 + - - +
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Residues in contact with ILE 22 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18T ALA* 2.8 25.3 + - + +
19T THR* 3.4 10.5 - - + +
21T TYR* 1.3 74.9 - - - +
23T GLY* 1.3 59.6 + - - +
25T ALA* 3.1 3.8 + - + +
26T TRP* 2.9 45.6 + - + +
31Y VAL* 3.5 33.4 - - + +
32Y ILE* 5.6 0.7 - - - -
35Y ALA* 3.6 25.8 - - + -
48h LYS* 3.4 23.8 - - - +
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Residues in contact with GLY 23 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19T THR 3.0 13.8 + - - -
20T GLU* 3.1 5.6 + - - -
22T ILE* 1.3 76.4 - - - +
24T TYR* 1.3 61.0 + - - +
26T TRP* 3.6 4.5 + - - +
27T ALA* 2.9 31.6 + - - +
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Residues in contact with TYR 24 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2O GLU* 5.3 0.5 + - - -
7O ALA* 4.1 4.7 - - + -
8O LYS* 3.2 44.6 - - + +
11O PHE* 3.4 53.8 - + + -
20T GLU* 2.6 46.8 + - + +
21T TYR* 3.3 31.2 - + + +
22T ILE 3.2 0.2 - - - -
23T GLY* 1.3 77.9 - - - +
25T ALA* 1.3 59.2 + - - +
27T ALA* 5.6 0.2 - - + -
28T MET* 2.8 33.1 + - - +
42h PHE* 5.3 4.3 - + - -
45h PHE* 3.5 10.5 - + + -
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Residues in contact with ALA 25 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21T TYR 2.8 18.7 + - - +
22T ILE* 3.1 6.7 + - - +
24T TYR* 1.3 74.1 - - - +
26T TRP* 1.3 61.5 + - - +
28T MET* 3.8 2.0 - - - +
29T VAL* 3.1 25.8 + - - +
39Y ILE* 3.7 22.8 - - + +
45h PHE* 3.5 15.0 - - + -
48h LYS* 3.8 27.8 - - + -
49h ALA* 4.7 4.0 - - - -
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Residues in contact with TRP 26 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5K ASP* 4.3 6.3 - - - -
6K PRO* 3.7 38.0 - - + +
7K ALA* 3.7 18.2 - - + -
21P TYR* 3.5 26.2 - - - -
22T ILE* 2.9 37.7 + - + +
23T GLY* 4.0 4.9 - - - +
25T ALA* 1.3 73.6 - - - +
27T ALA* 1.3 60.6 + - - +
29T VAL* 3.3 12.0 - - + +
30T VAL* 2.9 39.5 + - + +
35Y ALA* 4.7 7.5 + - - +
38Y GLY* 3.8 16.2 - - - -
39Y ILE* 3.6 31.7 - - + +
42Y PHE* 3.8 25.6 - + + -
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Residues in contact with ALA 27 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6K PRO* 5.3 1.3 - - - +
11O PHE* 3.7 19.7 - - + -
15O GLN* 4.4 4.3 - - - +
23T GLY 2.9 21.8 + - - +
24T TYR 3.7 3.4 - - - +
26T TRP* 1.3 75.9 - - - +
28T MET* 1.3 60.9 + - - +
30T VAL* 3.7 5.4 - - - +
31T VAL* 3.2 29.3 + - - +
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Residues in contact with MET 28 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11O PHE* 3.9 16.8 - - + -
14O LEU* 3.6 33.2 - - + +
15O GLN* 3.2 29.8 + - - +
18O ALA* 4.6 17.9 - - - -
24T TYR 2.8 16.9 + - - +
25T ALA 3.8 3.6 - - - +
27T ALA* 1.3 77.2 - - - +
29T VAL* 1.3 57.9 + - - +
31T VAL* 3.1 7.0 + - - +
32T ILE* 2.9 44.8 + - + +
37c ILE* 5.6 4.7 - - + -
41c LEU* 4.8 7.4 - - + -
45h PHE* 4.0 8.7 - - + -
49h ALA* 3.7 25.4 - - + -
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Residues in contact with VAL 29 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25T ALA 3.1 14.6 + - - +
26T TRP* 3.3 35.2 - - + +
28T MET* 1.3 76.2 - - - +
30T VAL* 1.3 64.2 + - + +
32T ILE* 4.1 13.7 - - + -
33T VAL* 2.8 49.2 + - + +
39Y ILE* 4.0 25.8 - - + -
42Y PHE* 4.6 5.2 - - + -
43Y LYS* 4.7 12.3 - - + -
48h LYS 4.6 7.0 - - - +
49h ALA* 5.0 5.4 - - - +
50h SER 6.1 1.1 - - - +
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Residues in contact with VAL 30 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6K PRO* 3.7 36.1 - - + +
9K ALA* 5.5 2.5 - - + -
10K ALA* 3.9 27.8 - - + +
26T TRP* 2.9 33.5 + - + +
27T ALA* 3.7 6.1 - - - +
29T VAL* 1.3 76.8 - - + +
31T VAL* 1.3 62.3 + - + +
33T VAL* 4.1 1.9 - - - +
34T GLY* 2.8 28.4 + - - -
42Y PHE* 4.9 2.0 - - + -
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Residues in contact with VAL 31 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15O GLN* 3.9 22.7 - - - +
18O ALA* 4.5 15.7 - - + -
19O THR* 5.4 4.5 - - - +
22O ILE* 3.5 25.4 - - + +
27T ALA 3.2 14.3 + - - +
28T MET* 3.1 10.6 + - - +
30T VAL* 1.3 81.3 - - + +
32T ILE* 1.3 62.6 + - + +
34T GLY* 3.9 0.6 - - - -
35T ALA* 3.2 23.2 + - - +
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Residues in contact with ILE 32 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18O ALA* 5.8 1.6 - - + -
22O ILE* 5.6 0.7 - - - -
28T MET* 2.9 36.3 + - + +
29T VAL* 3.7 11.9 - - + +
31T VAL* 1.3 80.5 - - + +
33T VAL* 1.3 59.7 + - + +
35T ALA* 3.9 2.7 - - - +
36T THR* 2.6 46.0 + - - +
41c LEU* 4.4 23.1 - - + -
44c LYS* 5.0 25.8 - - + +
48c LYS* 4.8 6.4 - - - +
49h ALA 3.4 25.8 - - - +
50h SER 5.6 1.3 - - - +
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Residues in contact with VAL 33 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10K ALA* 5.3 1.3 - - + -
14K LEU* 4.0 14.1 - - + -
29T VAL* 2.8 34.1 + - + +
30T VAL 4.1 1.6 - - - +
32T ILE* 1.3 72.9 - - + +
34T GLY* 1.3 61.3 + - - +
36T THR* 4.2 5.8 - - - -
37T ILE* 2.8 40.9 + - + +
42Y PHE* 3.7 27.4 - - + -
43Y LYS* 5.7 4.0 - - + -
46Y THR* 3.5 33.0 - - + +
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Residues in contact with GLY 34 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10K ALA* 5.7 2.9 - - - +
13K SER* 6.3 2.7 - - - -
14K LEU* 3.8 15.4 - - - +
30T VAL 2.8 19.8 + - - -
31T VAL* 3.9 2.0 - - - -
32T ILE 3.3 0.2 - - - -
33T VAL* 1.3 76.8 - - - +
35T ALA* 1.3 55.9 + - - +
38T GLY* 2.9 27.9 + - - -
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Residues in contact with ALA 35 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22O ILE* 3.6 44.4 - - + -
26O TRP* 4.7 8.9 + - - +
31T VAL 3.2 13.1 + - - +
32T ILE 4.0 2.2 - - - +
34T GLY* 1.3 72.0 - - - +
36T THR* 1.3 66.7 + - - +
38T GLY* 3.8 0.4 - - - -
39T ILE* 3.0 31.7 + - + +
48c LYS* 4.0 10.3 - - + +
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Residues in contact with THR 36 (chain T).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32T ILE* 2.6 36.8 + - - +
33T VAL* 3.8 5.4 - - - -
35T ALA* 1.3 78.2 - - - +
37T ILE* 1.3 67.8 + - + +
39T ILE* 3.5 3.1 + - - +
40T LYS* 3.1 30.1 + - - +
44c LYS* 5.8 2.3 - - - +
47c SER* 5.9 2.2 - - - +
48c LYS* 3.4 31.1 - - + +
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Residues in contact with ILE 37 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14K LEU* 3.7 25.1 - - + -
28P MET* 5.6 5.6 - - + -
33T VAL* 2.8 38.9 + - + +
36T THR* 1.3 77.9 - - + +
38T GLY* 1.3 56.4 + - - +
40T LYS* 3.1 31.9 + - + +
41T LEU* 2.7 47.5 + - + +
45Y PHE* 6.1 0.7 - - + -
46Y THR* 4.0 29.8 - - + +
49Y ALA* 6.1 5.8 - - + -
50Y SER* 4.7 0.2 - - - +
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Residues in contact with GLY 38 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14K LEU* 3.9 7.7 - - - +
17K SER* 5.1 5.6 - - - -
21K TYR* 3.3 16.3 - - - -
26O TRP* 3.8 11.8 - - - -
34T GLY 2.9 20.7 + - - -
35T ALA 3.8 0.9 - - - -
37T ILE* 1.3 77.0 - - - +
39T ILE* 1.3 55.8 + - - +
41T LEU* 3.3 7.7 + - - +
42T PHE* 3.1 21.5 + - - +
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Residues in contact with ILE 39 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25O ALA* 3.6 41.1 - - + +
26O TRP* 3.6 36.1 - - + +
29O VAL* 4.0 23.3 - - + -
35T ALA* 3.0 23.0 + - + +
36T THR 3.7 3.6 - - - +
38T GLY* 1.3 71.3 - - - +
40T LYS* 1.3 61.4 + - - +
42T PHE* 3.0 3.9 + - + +
43T LYS* 2.8 33.4 + - + +
48c LYS* 3.6 32.1 - - + +
----------------------------------------------------------
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Residues in contact with LYS 40 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36T THR* 3.1 20.1 + - - +
37T ILE* 3.1 32.5 + - + +
39T ILE* 1.3 76.9 - - - +
41T LEU* 1.3 58.4 + - + +
43T LYS* 3.1 21.8 + - + +
44T LYS* 2.8 45.8 + - + +
49Y ALA 5.4 1.8 - - - +
50Y SER* 3.6 36.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 41 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14K LEU* 3.6 29.4 - - + +
17K SER* 4.3 8.3 - - - -
18K ALA* 3.9 24.5 - - + +
21K TYR* 3.7 16.7 - - + +
28P MET* 4.9 6.1 - - + -
32P ILE* 4.4 25.8 - - + -
37T ILE* 2.7 40.3 + - + +
38T GLY* 3.5 6.5 - - - +
40T LYS* 1.3 74.7 - - + +
42T PHE* 1.3 56.9 + - - +
44T LYS* 3.1 14.5 + - + +
45T PHE* 2.9 25.3 + - - +
48T LYS* 5.3 1.4 + - - -
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Residues in contact with PHE 42 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21K TYR* 3.6 21.2 - + + -
24K TYR* 5.3 7.4 - + - -
26O TRP* 3.8 30.7 - + + -
29O VAL* 4.6 14.8 - - + -
30O VAL* 4.9 11.4 - - + -
33O VAL* 3.7 42.6 - - + -
38T GLY 3.1 11.9 + - - +
39T ILE 3.0 10.4 + - - +
41T LEU* 1.3 73.9 - - - +
43T LYS* 1.3 64.7 + - - +
45T PHE* 3.1 45.2 - + + +
46T THR* 3.2 10.2 + - - +
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Residues in contact with LYS 43 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29O VAL* 4.7 12.6 - - + -
33O VAL* 5.7 2.9 - - + -
39T ILE* 2.8 29.3 + - + +
40T LYS* 3.1 22.4 + - + +
42T PHE* 1.3 76.7 - - + +
44T LYS* 1.3 61.3 + - + +
46T THR* 2.5 26.4 + - - +
47T SER* 3.1 9.7 + - - -
48c LYS 5.3 0.9 - - - +
50c SER* 2.8 35.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 44 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32P ILE* 5.0 25.4 - - + +
36P THR* 5.8 1.8 - - - +
40T LYS* 2.8 32.3 + - + +
41T LEU* 3.1 22.0 + - + +
43T LYS* 1.3 74.5 - - + +
45T PHE* 1.3 60.8 + - - +
47T SER* 3.3 10.8 + - - -
48T LYS* 2.8 46.0 + - + +
50Y SER* 4.0 21.1 + - - +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21K TYR* 4.1 14.4 - - + +
24K TYR* 3.4 36.3 - + + -
25K ALA* 3.5 21.5 - - - -
28K MET* 4.0 24.7 - - + -
33O VAL* 5.3 2.5 - - + -
37O ILE* 6.1 3.1 - - + -
41T LEU 2.9 11.9 + - - +
42T PHE* 3.1 43.5 + + - +
44T LYS* 1.3 75.4 - - - +
46T THR* 1.3 70.8 + - + +
48T LYS* 3.1 13.6 + - - +
49T ALA* 2.8 46.1 + - + +
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Residues in contact with THR 46 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33O VAL* 3.5 40.6 - - + +
37O ILE* 4.0 20.4 - - + +
42T PHE* 3.2 13.4 + - + +
43T LYS* 2.5 24.4 + - - +
45T PHE* 1.3 89.3 - - + +
47T SER* 1.3 52.8 + - - +
49T ALA* 3.9 6.4 - - - +
50T SER* 2.6 32.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 47 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36P THR* 5.9 2.3 - - - +
43T LYS 3.1 8.0 + - - -
44T LYS* 3.4 16.2 - - - -
46T THR* 1.3 80.5 + - - +
48T LYS* 1.3 65.5 + - - +
50T SER* 3.0 25.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18K ALA 5.1 0.4 + - - -
21K TYR* 4.5 2.2 + - - +
22K ILE* 3.4 37.4 - - - +
25K ALA* 3.8 22.2 - - + -
29K VAL* 4.7 3.5 - - - +
32P ILE* 5.1 5.8 + - - +
35P ALA* 4.0 7.1 - - + +
36P THR* 3.4 50.6 + - + +
39P ILE* 3.6 30.2 - - + +
43P LYS* 5.3 0.9 - - - +
41T LEU 5.3 1.6 + - - -
44T LYS* 2.8 38.3 + - + +
45T PHE* 3.1 6.4 + - - +
47T SER* 1.3 74.0 - - - +
49T ALA* 1.3 59.3 + - - +
50T SER* 3.1 5.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain T).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25K ALA 4.7 6.7 - - - +
28K MET* 3.7 27.1 - - + +
29K VAL* 5.0 6.4 - - - +
32K ILE* 3.4 23.6 - - - +
37O ILE* 6.1 6.1 - - + -
40O LYS* 5.4 2.5 - - - +
44O LYS* 5.9 0.7 - - - -
45T PHE* 2.8 32.4 + - + +
46T THR* 3.9 7.4 - - - +
47T SER 3.1 0.4 - - - -
48T LYS* 1.3 74.7 - - - +
50T SER* 1.3 60.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il