Contacts of the helix formed by residues 5 - 49 (chain V) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain V).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1V ALA 3.9 6.0 + - - +
3V GLY 3.3 5.4 - - - +
4V ASP* 1.3 76.2 - - - +
6V PRO* 1.3 72.9 - - - +
7V ALA* 2.8 21.1 + - - +
8V LYS* 2.8 29.7 + - + +
9V ALA* 3.3 5.2 + - - +
17a SER* 5.6 0.7 + - - -
20a GLU* 3.8 15.5 - - - +
21a TYR* 2.7 32.3 + - - -
26e TRP* 4.3 5.4 - - - -
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Residues in contact with PRO 6 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4V ASP 3.2 10.3 - - - +
5V ASP* 1.3 91.3 - - - +
7V ALA* 1.3 56.1 + - - +
9V ALA* 3.2 10.3 + - + +
10V ALA* 2.9 29.3 + - - +
23e GLY* 6.5 0.4 - - - -
26e TRP* 3.7 42.4 - - + +
27e ALA* 5.9 0.7 - - - -
30e VAL* 3.7 17.6 - - + +
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Residues in contact with ALA 7 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A PHE* 3.5 29.8 - - + -
5V ASP* 2.8 14.7 + - - +
6V PRO* 1.3 79.4 - - - +
8V LYS* 1.3 56.0 + - - +
10V ALA* 3.4 2.5 + - - +
11V PHE* 2.8 29.5 + - - +
21a TYR* 3.4 32.8 - - + +
24a TYR* 4.1 2.4 - - - -
26e TRP* 3.7 10.6 - - + -
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Residues in contact with LYS 8 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2V GLU* 2.8 35.8 + - - +
3V GLY* 4.0 22.9 - - - +
5V ASP* 2.8 16.2 + - + +
7V ALA* 1.3 77.3 - - - +
9V ALA* 1.3 59.0 + - - +
11V PHE* 3.5 0.7 - - - +
12V ASN* 2.8 51.2 + - - +
20a GLU* 4.2 5.6 - - - +
24a TYR* 3.2 32.2 - - + +
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Residues in contact with ALA 9 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3V GLY 6.1 1.1 - - - +
5V ASP 3.3 4.2 + - - +
6V PRO* 3.2 15.1 + - + +
8V LYS* 1.3 79.4 - - - +
10V ALA* 1.3 59.1 - - - +
12V ASN* 3.6 6.9 + - - +
13V SER* 2.8 30.1 + - - -
30e VAL* 5.5 3.1 - - + -
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Residues in contact with ALA 10 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A PHE* 3.6 27.4 - - + -
6V PRO 2.9 15.7 + - - +
7V ALA 3.6 0.4 - - - +
9V ALA* 1.3 75.5 - - - +
11V PHE* 1.3 65.7 + - - +
13V SER* 3.2 7.2 + - - -
14V LEU* 2.9 33.7 + - + +
30e VAL* 3.9 29.1 - - + +
33e VAL* 5.3 1.8 - - + -
34e GLY* 5.7 2.4 - - - +
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Residues in contact with PHE 11 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A PHE* 4.9 0.4 - - - -
45A PHE* 3.7 15.7 - + + -
7V ALA 2.8 21.4 + - - +
8V LYS* 3.5 4.0 - - + +
10V ALA* 1.3 73.6 - - - +
12V ASN* 1.3 72.6 + - - +
14V LEU* 3.1 10.7 + - - +
15V GLN* 2.8 67.3 + - + +
24a TYR* 3.4 69.3 - + + -
27a ALA* 3.7 20.4 - - + -
28a MET* 3.9 5.8 - - + -
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Residues in contact with ASN 12 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8V LYS* 2.8 47.3 + - - +
9V ALA* 4.0 5.6 - - - +
11V PHE* 1.3 91.5 - - - +
13V SER* 1.3 57.7 + - - +
15V GLN* 3.2 8.7 + - - +
16V ALA* 3.0 28.2 + - - +
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Residues in contact with SER 13 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9V ALA 2.8 22.7 + - - -
10V ALA* 3.4 7.8 - - - -
12V ASN* 1.3 77.4 - - - +
14V LEU* 1.3 59.7 + - - +
16V ALA* 3.4 8.0 + - - +
17V SER* 3.0 30.9 + - - -
34e GLY* 6.3 2.2 - - - -
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Residues in contact with LEU 14 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A PHE* 4.3 21.1 - - + -
10V ALA* 2.9 21.5 + - + +
11V PHE* 3.5 7.2 - - - +
13V SER* 1.3 75.2 - - - +
15V GLN* 1.3 60.5 + - - +
17V SER* 4.2 4.5 - - - +
18V ALA* 2.8 31.0 + - - +
28a MET* 3.6 15.7 - - + -
33e VAL* 4.0 21.1 - - + -
34e GLY* 3.8 26.9 - - - +
37e ILE* 3.7 36.6 - - + -
38e GLY* 3.9 8.1 - - - +
41e LEU* 3.6 8.1 - - + +
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Residues in contact with GLN 15 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11V PHE* 2.8 50.5 + - + +
12V ASN* 3.4 11.9 - - - +
14V LEU* 1.3 77.0 - - - +
16V ALA* 1.3 56.1 + - - +
18V ALA* 3.7 3.4 - - - +
19V THR* 2.8 34.6 + - - +
27a ALA* 4.3 4.3 + - - +
28a MET* 3.2 37.3 - - - +
31a VAL* 3.9 24.4 - - - +
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Residues in contact with ALA 16 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12V ASN 3.0 12.6 + - - +
13V SER* 3.6 10.1 - - - +
15V GLN* 1.3 74.5 - - - +
17V SER* 1.3 64.3 + - - +
19V THR* 3.4 7.2 + - - -
20V GLU* 3.0 24.2 + - - +
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Residues in contact with SER 17 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5Q ASP* 5.6 0.3 + - - -
13V SER 3.0 18.1 + - - -
14V LEU* 3.6 10.3 - - - +
15V GLN 3.3 0.2 - - - -
16V ALA* 1.3 75.2 - - - +
18V ALA* 1.3 63.8 + - - +
20V GLU* 3.3 10.3 + - - +
21V TYR* 3.0 50.8 + - - -
38e GLY* 5.1 6.8 - - - -
41e LEU* 4.3 6.1 - - - -
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Residues in contact with ALA 18 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14V LEU 2.8 20.4 + - - +
15V GLN* 3.7 7.2 - - - +
17V SER* 1.3 74.0 - - - +
19V THR* 1.3 52.3 + - - +
21V TYR* 3.1 5.8 + - - +
22V ILE* 2.8 42.7 + - + +
28a MET* 4.6 7.0 - - - -
31a VAL* 4.5 18.2 - - + -
32a ILE* 5.8 1.6 - - + -
41e LEU* 3.9 25.7 - - + +
48e LYS* 5.1 0.2 + - - -
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Residues in contact with THR 19 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15V GLN* 2.8 23.5 + - - -
16V ALA* 3.6 7.6 - - - -
18V ALA* 1.3 75.7 - - - +
20V GLU* 1.3 62.9 + - - +
22V ILE* 3.3 13.7 + - + +
23V GLY* 3.0 19.4 + - - -
31a VAL* 5.5 3.3 - - - +
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Residues in contact with GLU 20 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2Q GLU* 5.1 7.8 - - - +
5Q ASP* 3.8 18.8 - - - +
8Q LYS* 4.2 7.8 - - - +
16V ALA 3.0 14.2 + - - +
17V SER* 3.5 12.5 + - - +
19V THR* 1.3 77.1 - - - +
21V TYR* 1.3 68.2 + - + +
23V GLY* 3.1 4.7 + - - -
24V TYR* 2.6 63.3 + - + -
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Residues in contact with TYR 21 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5Q ASP* 2.7 25.6 + - - -
7Q ALA* 3.4 28.6 - - + +
17V SER* 3.0 32.6 + - - +
18V ALA* 3.8 4.0 - - - +
20V GLU* 1.3 85.4 - - - +
22V ILE* 1.3 56.0 + - - +
24V TYR* 3.3 22.7 + + - +
25V ALA* 2.8 32.6 + - - +
26Z TRP* 3.5 12.8 - - - -
38e GLY* 3.3 21.6 - - - -
41e LEU* 3.7 21.1 - - + +
42e PHE* 3.6 24.7 - + + -
45e PHE* 3.8 12.0 - - + +
48e LYS* 4.6 3.6 - - - +
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Residues in contact with ILE 22 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18V ALA* 2.8 25.9 + - + +
19V THR* 3.4 10.5 - - + +
21V TYR* 1.3 74.9 - - - +
23V GLY* 1.3 60.1 + - - +
25V ALA* 3.1 2.6 + - + +
26V TRP* 2.9 45.2 + - + +
31a VAL* 3.5 33.7 - - + +
32a ILE* 5.6 0.7 - - - -
35a ALA* 3.6 25.8 - - + -
48e LYS* 3.4 24.0 - - - +
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Residues in contact with GLY 23 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6M PRO* 6.5 0.4 - - - -
19V THR 3.0 14.0 + - - -
20V GLU* 3.1 5.8 + - - -
22V ILE* 1.3 76.6 - - - +
24V TYR* 1.3 59.5 + - - +
26V TRP* 4.0 4.9 - - - +
27V ALA* 2.9 32.1 + - - +
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Residues in contact with TYR 24 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2Q GLU* 5.3 0.7 + - - -
7Q ALA* 4.1 4.7 - - + -
8Q LYS* 3.2 45.1 - - + +
11Q PHE* 3.4 52.6 - + + -
20V GLU* 2.6 47.0 + - + +
21V TYR* 3.3 31.6 - + + +
22V ILE 3.2 0.2 - - - -
23V GLY* 1.3 77.3 - - - +
25V ALA* 1.3 58.4 - - - +
28V MET* 2.8 33.1 + - - +
42e PHE* 5.3 4.7 - + - -
45e PHE* 3.5 11.2 - + + -
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Residues in contact with ALA 25 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21V TYR 2.8 19.3 + - - +
22V ILE* 3.1 6.7 + - - +
24V TYR* 1.3 74.8 - - - +
26V TRP* 1.3 61.1 + - - +
28V MET* 3.8 1.4 - - - +
29V VAL* 3.1 26.0 + - - +
39a ILE* 3.7 21.7 - - + +
45e PHE* 3.5 14.3 - - + -
48e LYS* 3.8 28.3 - - + -
49e ALA* 4.7 4.5 - - - -
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Residues in contact with TRP 26 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5M ASP* 4.3 6.1 - - - -
6M PRO* 3.7 37.6 - - + +
7M ALA* 3.7 17.9 - - + -
21R TYR* 3.5 25.6 - - - -
22V ILE* 2.9 37.3 + - + +
23V GLY* 4.0 4.7 - - - +
25V ALA* 1.3 73.2 - - - +
27V ALA* 1.3 61.6 + - - +
29V VAL* 3.3 12.3 - - + +
30V VAL* 2.9 40.2 + - + +
35a ALA* 4.7 7.7 + - - +
38a GLY* 3.8 16.4 - - - -
39a ILE* 3.6 32.8 - - + +
42a PHE* 3.8 26.5 - + + -
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Residues in contact with ALA 27 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6M PRO* 5.3 1.1 - - - +
11Q PHE* 3.7 19.3 - - + -
15Q GLN* 4.4 4.5 - - - +
23V GLY 2.9 20.4 + - - +
24V TYR 3.7 4.0 - - - +
26V TRP* 1.3 76.3 - - - +
28V MET* 1.3 62.4 + - - +
30V VAL* 3.6 5.8 + - - +
31V VAL* 3.2 29.3 + - - +
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Residues in contact with MET 28 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11Q PHE* 3.9 16.2 - - + -
14Q LEU* 3.6 32.5 - - + +
15Q GLN* 3.2 30.5 + - - +
18Q ALA* 4.6 17.5 - - - -
24V TYR 2.8 18.1 + - - +
25V ALA 3.8 3.8 - - - +
27V ALA* 1.3 77.9 - - - +
29V VAL* 1.3 57.1 + - - +
31V VAL* 3.1 6.8 + - - +
32V ILE* 2.9 44.7 + - + +
37Z ILE* 5.6 4.3 - - + -
41Z LEU* 4.9 7.0 - - + -
45e PHE* 4.0 9.4 - - + -
49e ALA* 3.7 26.0 - - + +
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Residues in contact with VAL 29 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25V ALA 3.1 13.6 + - - +
26V TRP* 3.3 35.0 - - + +
28V MET* 1.3 76.7 - - - +
30V VAL* 1.3 65.4 + - + +
32V ILE* 4.1 14.1 - - + -
33V VAL* 2.8 49.4 + - + +
39a ILE* 4.0 25.6 - - + -
42a PHE* 4.6 5.4 - - + -
43a LYS* 4.7 11.9 - - + -
48e LYS 4.6 7.2 - - - +
49e ALA* 5.0 4.5 - - - +
50e SER 6.1 1.6 - - - +
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Residues in contact with VAL 30 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6M PRO* 3.7 36.3 - - + +
9M ALA* 5.5 2.5 - - + -
10M ALA* 3.9 26.8 - - + +
26V TRP* 2.9 33.7 + - + +
27V ALA* 3.7 6.7 - - - +
29V VAL* 1.3 76.5 - - + +
31V VAL* 1.3 63.0 + - + +
33V VAL* 4.1 2.2 - - - +
34V GLY* 2.8 28.6 + - - -
42a PHE* 4.9 3.1 - - + -
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Residues in contact with VAL 31 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15Q GLN* 3.9 23.6 - - - +
18Q ALA* 4.5 15.7 - - + -
19Q THR* 5.4 4.0 - - - +
22Q ILE* 3.5 26.0 - - + +
27V ALA 3.2 14.3 + - - +
28V MET* 3.1 10.2 + - - +
30V VAL* 1.3 80.3 - - + +
32V ILE* 1.3 64.9 + - + +
34V GLY* 3.9 0.8 - - - -
35V ALA* 3.2 23.6 + - - +
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Residues in contact with ILE 32 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18Q ALA* 5.8 1.1 - - + -
22Q ILE* 5.6 0.7 - - - -
28V MET* 2.9 36.9 + - + +
29V VAL* 3.7 11.2 - - + +
30V VAL 3.3 0.2 - - - -
31V VAL* 1.3 79.3 - - + +
33V VAL* 1.3 59.3 + - + +
35V ALA* 4.0 2.5 - - - +
36V THR* 2.6 45.9 + - - +
41Z LEU* 4.4 22.2 - - + -
44Z LYS* 5.0 26.9 - - + +
48Z LYS* 4.8 6.0 - - - +
49e ALA 3.4 25.4 - - - +
50e SER 5.6 2.2 - - - +
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Residues in contact with VAL 33 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10M ALA* 5.3 1.1 - - + -
14M LEU* 4.0 14.8 - - + -
29V VAL* 2.8 33.3 + - + +
30V VAL 4.1 1.6 - - - +
32V ILE* 1.3 72.5 - - + +
34V GLY* 1.3 61.6 + - - +
36V THR* 4.2 6.3 - - - -
37V ILE* 2.8 40.5 + - + +
42a PHE* 3.7 27.4 - - + -
43a LYS* 5.7 4.5 - - + -
46a THR* 3.5 33.2 - - + +
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Residues in contact with GLY 34 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10M ALA* 5.7 3.8 - - - +
13M SER* 6.3 2.2 - - - -
14M LEU* 3.8 15.5 - - - +
30V VAL 2.8 19.4 + - - -
31V VAL* 3.9 1.3 - - - -
33V VAL* 1.3 75.7 - - - +
35V ALA* 1.3 56.3 + - - +
38V GLY* 2.9 27.4 + - - -
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Residues in contact with ALA 35 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22Q ILE* 3.6 43.7 - - + -
26Q TRP* 4.7 8.1 + - - +
31V VAL 3.2 12.8 + - - +
32V ILE 4.0 2.0 - - - +
34V GLY* 1.3 72.4 - - - +
36V THR* 1.3 66.8 + - - +
38V GLY* 4.9 0.2 - - - -
39V ILE* 3.0 31.8 + - + +
48Z LYS* 4.0 11.9 - - + +
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Residues in contact with THR 36 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32V ILE* 2.6 35.9 + - - +
33V VAL* 3.8 5.4 - - - -
35V ALA* 1.3 78.9 - - - +
37V ILE* 1.3 68.4 + - + +
39V ILE* 3.5 3.6 + - - +
40V LYS* 3.1 30.8 + - - +
44Z LYS* 5.8 2.6 - - - +
47Z SER* 5.9 2.5 - - - +
48Z LYS* 3.4 31.0 - - + +
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Residues in contact with ILE 37 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14M LEU* 3.7 26.0 - - + -
28R MET* 5.6 5.4 - - + -
33V VAL* 2.8 37.6 + - + +
36V THR* 1.3 76.9 - - + +
38V GLY* 1.3 57.7 + - - +
40V LYS* 3.1 32.8 + - + +
41V LEU* 2.7 48.1 + - + +
45a PHE* 6.3 0.4 - - + -
46a THR* 4.0 30.5 - - + +
49a ALA* 6.1 4.9 - - + -
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Residues in contact with GLY 38 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14M LEU* 3.9 7.5 - - - +
17M SER* 5.1 5.8 - - - -
21M TYR* 3.3 17.2 - - - -
26Q TRP* 3.8 11.2 - - - -
34V GLY 2.9 21.1 + - - -
35V ALA 3.8 0.7 - - - -
37V ILE* 1.3 77.3 - - - +
39V ILE* 1.3 56.1 + - - +
41V LEU* 3.3 7.0 + - - -
42V PHE* 3.0 21.8 + - - +
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Residues in contact with ILE 39 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25Q ALA* 3.7 39.7 - - + +
26Q TRP* 3.6 36.6 - - + +
29Q VAL* 4.0 22.9 - - + -
35V ALA* 3.0 22.5 + - + +
36V THR 3.7 4.0 - - - +
38V GLY* 1.3 72.1 - - - +
40V LYS* 1.3 60.3 + - - +
42V PHE* 3.0 3.9 + - + +
43V LYS* 2.8 35.1 + - + +
48Z LYS* 3.6 33.4 - - + +
----------------------------------------------------------
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Residues in contact with LYS 40 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36V THR* 3.1 21.0 + - - +
37V ILE* 3.1 32.3 + - + +
39V ILE* 1.3 76.9 - - - +
41V LEU* 1.3 57.9 + - + +
43V LYS* 3.1 21.9 + - + +
44V LYS* 2.9 45.0 + - + +
49a ALA 5.4 1.6 - - - +
50a SER* 3.6 35.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 41 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14M LEU* 3.6 29.4 - - + +
17M SER* 4.3 8.3 - - - -
18M ALA* 3.9 25.4 - - + +
21M TYR* 3.7 16.2 - - + +
28R MET* 4.9 5.4 - - - -
32R ILE* 4.4 26.5 - - + -
37V ILE* 2.7 40.6 + - + +
38V GLY* 3.5 6.1 - - - +
40V LYS* 1.3 74.3 - - + +
42V PHE* 1.3 58.3 + - - +
44V LYS* 3.1 13.5 + - + +
45V PHE* 2.9 25.1 + - - +
48V LYS* 5.3 1.6 + - - -
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Residues in contact with PHE 42 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21M TYR* 3.6 21.2 - + + -
24M TYR* 5.3 7.4 - + - -
26Q TRP* 3.8 30.7 - + + -
29Q VAL* 4.6 13.9 - - + -
30Q VAL* 4.9 11.0 - - + -
33Q VAL* 3.7 42.8 - - + -
38V GLY 3.0 12.6 + - - +
39V ILE 3.0 9.6 + - - +
41V LEU* 1.3 75.0 - - - +
43V LYS* 1.3 63.0 + - - +
45V PHE* 3.1 43.8 - + + +
46V THR* 3.2 11.1 + - - +
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Residues in contact with LYS 43 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29Q VAL* 4.7 12.6 - - + -
33Q VAL* 5.7 3.1 - - + -
39V ILE* 2.8 29.7 + - + +
40V LYS* 3.2 22.2 - - + +
42V PHE* 1.3 76.1 - - + +
44V LYS* 1.3 63.0 + - + +
46V THR* 2.5 26.7 + - - +
47V SER* 3.1 9.5 + - - -
48Z LYS 5.3 0.7 - - - +
50Z SER* 2.8 36.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 44 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32R ILE* 5.0 24.7 - - + +
36R THR* 5.8 2.0 - - - +
40V LYS* 2.9 33.1 + - + +
41V LEU* 3.1 21.7 + - + +
43V LYS* 1.3 72.9 - - + +
45V PHE* 1.3 60.8 + - - +
47V SER* 3.3 10.6 + - - -
48V LYS* 2.8 45.7 + - + +
50a SER* 4.0 20.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21M TYR* 4.1 13.9 - - + +
24M TYR* 3.4 37.0 - + + -
25M ALA* 3.5 21.1 - - - -
28M MET* 4.0 24.5 - - + -
33Q VAL* 5.3 2.2 - - + -
37Q ILE* 6.1 4.0 - - + -
41V LEU 2.9 12.2 + - - +
42V PHE* 3.1 43.5 - + + +
44V LYS* 1.3 76.7 - - - +
46V THR* 1.3 70.2 + - + +
48V LYS* 3.1 12.8 + - - +
49V ALA* 2.8 46.5 + - + +
----------------------------------------------------------
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Residues in contact with THR 46 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33Q VAL* 3.5 40.6 - - + +
37Q ILE* 4.0 20.9 - - + +
42V PHE* 3.2 14.1 + - + +
43V LYS* 2.5 24.6 + - - +
45V PHE* 1.3 89.1 - - + +
47V SER* 1.3 52.3 + - - +
49V ALA* 3.6 6.7 + - - +
50V SER* 2.6 33.3 + - - -
----------------------------------------------------------
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Residues in contact with SER 47 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36R THR* 5.9 2.3 - - - +
43V LYS 3.1 8.8 + - - -
44V LYS* 3.4 17.3 - - - -
45V PHE 3.1 0.2 - - - -
46V THR* 1.3 79.7 + - - +
48V LYS* 1.3 65.8 + - - +
49V ALA 3.1 0.2 - - - -
50V SER* 3.0 24.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18M ALA 5.1 0.4 + - - -
21M TYR* 4.5 2.4 + - - +
22M ILE* 3.4 37.6 - - - +
25M ALA* 3.8 21.8 - - + -
29M VAL* 4.7 3.3 - - - +
32R ILE* 5.1 6.0 + - - +
35R ALA* 4.0 6.9 - - + +
36R THR* 3.4 49.7 + - + +
39R ILE* 3.6 29.6 - - + +
43R LYS* 5.3 1.0 - - - +
41V LEU 5.3 1.4 + - - -
44V LYS* 2.8 38.2 + - + +
45V PHE* 3.7 6.5 - - - +
47V SER* 1.3 75.3 - - - +
49V ALA* 1.3 60.1 + - - +
50V SER* 3.1 5.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 49 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25M ALA 4.7 6.7 - - - +
28M MET* 3.7 27.8 - - + -
29M VAL* 5.0 6.2 - - - +
32M ILE* 3.4 24.1 - - - +
37Q ILE* 6.1 6.1 - - + -
40Q LYS* 5.4 3.1 - - - +
44Q LYS* 5.9 0.3 - - - -
45V PHE* 2.8 30.4 + - + +
46V THR* 3.9 6.7 - - - +
47V SER 3.1 0.2 - - - -
48V LYS* 1.3 76.1 - - - +
50V SER* 1.3 61.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il