Contacts of the helix formed by residues 5 - 49 (chain Y) in PDB entry 2MJZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 5 (chain Y).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26D TRP* 4.3 5.6 - - - -
1Y ALA 3.9 4.6 + - - +
3Y GLY 3.3 5.2 - - - +
4Y ASP* 1.3 77.5 - - - +
6Y PRO* 1.3 73.9 - - - +
7Y ALA* 2.8 21.2 + - - +
8Y LYS* 2.8 30.2 + - + +
9Y ALA* 3.3 5.1 + - - +
17d SER* 5.6 0.5 + - - -
20d GLU* 3.8 15.1 - - - +
21d TYR* 2.7 33.2 + - - -
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Residues in contact with PRO 6 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23D GLY* 6.5 0.2 - - - -
26D TRP* 3.7 42.2 - - + +
27D ALA* 5.3 1.1 - - - +
30D VAL* 3.7 17.9 - - + +
4Y ASP 3.2 11.6 - - - +
5Y ASP* 1.3 90.5 - - - +
7Y ALA* 1.3 55.0 + - - +
9Y ALA* 3.2 10.2 + - + +
10Y ALA* 2.9 29.6 + - - +
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Residues in contact with ALA 7 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26D TRP* 3.7 10.8 - - + -
30D VAL* 5.0 0.2 - - - -
42I PHE* 3.5 30.6 - - + -
5Y ASP* 2.8 14.3 + - - +
6Y PRO* 1.3 80.9 - - - +
8Y LYS* 1.3 56.2 + - - +
10Y ALA* 3.4 2.3 + - - +
11Y PHE* 2.8 29.3 + - - +
21d TYR* 3.4 32.5 - - + +
24d TYR* 4.1 2.2 - - - -
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Residues in contact with LYS 8 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2Y GLU* 2.8 35.6 + - - +
3Y GLY* 4.0 23.4 - - - +
5Y ASP* 2.8 16.4 + - + +
7Y ALA* 1.3 78.0 - - - +
9Y ALA* 1.3 59.5 + - - +
11Y PHE* 3.2 1.1 + - + +
12Y ASN* 2.8 50.8 + - - +
20d GLU* 4.2 5.4 - - - +
24d TYR* 3.2 31.4 - - + +
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Residues in contact with ALA 9 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D VAL* 5.5 3.1 - - + -
3Y GLY 6.1 1.3 - - - +
5Y ASP 3.3 4.4 + - - +
6Y PRO* 3.2 14.1 + - + +
8Y LYS* 1.3 80.5 - - - +
10Y ALA* 1.3 58.6 + - - +
12Y ASN* 4.0 6.9 - - - +
13Y SER* 2.8 30.5 + - - -
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Residues in contact with ALA 10 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D VAL* 3.9 29.3 - - + +
33D VAL* 5.3 1.6 - - + -
34D GLY* 5.7 2.6 - - - +
42I PHE* 3.6 26.9 - - + -
6Y PRO 2.9 15.7 + - - +
7Y ALA 3.6 0.2 - - - +
9Y ALA* 1.3 75.2 - - - +
11Y PHE* 1.3 65.8 + - - +
13Y SER* 3.2 6.9 + - - -
14Y LEU* 2.9 32.4 + - + +
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Residues in contact with PHE 11 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42I PHE* 4.9 0.4 - - - -
45I PHE* 3.7 15.7 - + + -
7Y ALA 2.8 22.4 + - - +
8Y LYS* 3.5 4.3 - - + +
10Y ALA* 1.3 72.9 - - - +
12Y ASN* 1.3 72.9 + - - +
14Y LEU* 3.1 11.4 + - - +
15Y GLN* 2.8 67.5 + - + +
24d TYR* 3.4 68.4 - + + -
27d ALA* 3.7 20.9 - - + -
28d MET* 3.9 5.8 - - + -
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Residues in contact with ASN 12 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8Y LYS* 2.8 48.0 + - - +
9Y ALA* 4.0 6.0 - - - +
11Y PHE* 1.3 91.5 - - - +
13Y SER* 1.3 57.1 + - - +
15Y GLN* 3.2 9.7 + - - +
16Y ALA* 3.0 28.8 + - - +
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Residues in contact with SER 13 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34D GLY* 6.3 2.5 - - - -
9Y ALA 2.8 21.9 + - - -
10Y ALA* 3.4 8.7 - - - -
12Y ASN* 1.3 78.0 - - - +
14Y LEU* 1.3 58.0 - - - +
16Y ALA* 3.4 7.4 + - - +
17Y SER* 3.0 30.8 + - - -
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Residues in contact with LEU 14 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33D VAL* 4.0 21.1 - - + -
34D GLY* 3.8 26.7 - - - +
37D ILE* 3.7 36.8 - - + -
38D GLY* 3.9 8.1 - - - +
41D LEU* 3.6 7.7 - - + +
45I PHE* 4.3 21.1 - - + -
10Y ALA* 2.9 21.6 + - + +
11Y PHE* 3.1 6.9 + - - +
13Y SER* 1.3 75.2 - - - +
15Y GLN* 1.3 59.5 + - - +
17Y SER* 4.2 4.7 - - - +
18Y ALA* 2.8 30.7 + - - +
28d MET* 3.6 15.0 - - + -
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Residues in contact with GLN 15 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11Y PHE* 2.8 50.9 + - + +
12Y ASN* 3.4 11.7 - - - +
14Y LEU* 1.3 77.4 - - - +
16Y ALA* 1.3 56.6 + - - +
18Y ALA* 3.5 3.9 + - - +
19Y THR* 2.8 33.8 + - - -
27d ALA* 4.3 4.3 + - - +
28d MET* 3.2 37.6 - - + +
31d VAL* 3.9 24.5 - - - +
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Residues in contact with ALA 16 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12Y ASN 3.0 12.9 + - - +
13Y SER* 3.6 11.2 - - - +
15Y GLN* 1.3 74.3 - - - +
17Y SER* 1.3 63.9 + - - +
19Y THR* 3.4 7.4 + - - -
20Y GLU* 3.0 24.4 + - - +
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Residues in contact with SER 17 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38D GLY* 5.1 7.4 - - - -
41D LEU* 4.3 6.3 - - - -
5T ASP* 5.6 0.3 + - - -
13Y SER 3.0 17.8 + - - -
14Y LEU* 3.6 9.9 - - - +
15Y GLN 3.3 0.2 - - - -
16Y ALA* 1.3 75.9 - - - +
18Y ALA* 1.3 63.5 + - - +
20Y GLU* 3.3 9.9 + - - +
21Y TYR* 3.0 51.4 + - - -
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Residues in contact with ALA 18 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D LEU* 3.9 25.7 - - + +
48D LYS* 5.1 0.2 + - - -
14Y LEU 2.8 22.3 + - - +
15Y GLN* 3.7 6.7 - - - +
17Y SER* 1.3 74.4 - - - +
19Y THR* 1.3 52.2 + - - +
21Y TYR* 3.1 5.8 + - - +
22Y ILE* 2.8 42.5 + - + +
28d MET* 4.6 6.7 - - - -
31d VAL* 4.5 18.2 - - + -
32d ILE* 5.8 1.6 - - + -
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Residues in contact with THR 19 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15Y GLN* 2.8 23.1 + - - +
16Y ALA* 3.6 7.7 - - - -
18Y ALA* 1.3 75.9 - - - +
20Y GLU* 1.3 62.7 + - - +
22Y ILE* 3.3 13.4 + - + +
23Y GLY* 3.0 19.1 + - - -
31d VAL* 5.5 3.1 - - - +
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Residues in contact with GLU 20 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2T GLU* 5.1 7.6 - - - +
5T ASP* 3.8 19.5 - - - +
8T LYS* 4.2 8.0 - - - +
16Y ALA 3.0 15.0 + - - +
17Y SER* 3.5 12.2 - - - +
19Y THR* 1.3 77.3 - - - +
21Y TYR* 1.3 67.4 + - + +
23Y GLY* 3.1 5.8 + - - -
24Y TYR* 2.6 63.7 + - + +
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Residues in contact with TYR 21 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38D GLY* 3.3 21.9 - - - -
41D LEU* 3.7 20.6 - - + +
42D PHE* 3.6 24.7 - + + -
45D PHE* 3.8 10.9 - - + +
48D LYS* 4.6 3.8 - - - +
5T ASP* 2.7 24.6 + - - -
7T ALA* 3.4 28.8 - - + +
17Y SER* 3.0 33.1 + - - +
18Y ALA* 3.8 3.8 - - - +
20Y GLU* 1.3 85.6 - - + +
22Y ILE* 1.3 56.2 + - - +
24Y TYR* 3.3 21.8 + + - +
25Y ALA* 2.8 32.6 + - - +
26h TRP* 3.5 14.3 - + - -
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Residues in contact with ILE 22 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48D LYS* 3.4 23.8 - - - +
18Y ALA* 2.8 25.1 + - + +
19Y THR* 3.4 9.9 - - + +
21Y TYR* 1.3 74.9 - - - +
23Y GLY* 1.3 60.0 + - - +
25Y ALA* 3.1 3.3 + - - +
26Y TRP* 2.9 45.5 + - + +
31d VAL* 3.5 33.9 - - + +
32d ILE* 5.6 0.9 - - - -
35d ALA* 3.6 26.0 - - + -
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Residues in contact with GLY 23 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19Y THR 3.0 14.1 + - - -
20Y GLU* 3.1 6.5 + - - -
22Y ILE* 1.3 77.0 - - - +
24Y TYR* 1.3 58.8 + - - +
26Y TRP* 3.6 5.0 + - - +
27Y ALA* 2.9 31.4 + - - +
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Residues in contact with TYR 24 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42D PHE* 5.3 4.5 - + - -
45D PHE* 3.5 11.2 - + + -
2T GLU* 5.3 0.5 + - - -
7T ALA* 4.1 4.7 - - + -
8T LYS* 3.2 45.3 - - + +
11T PHE* 3.4 52.1 - + + -
20Y GLU* 2.6 46.2 + - + -
21Y TYR* 3.3 32.1 - + - +
22Y ILE 3.2 0.2 - - - -
23Y GLY* 1.3 77.0 - - - +
25Y ALA* 1.3 59.3 + - - +
27Y ALA* 5.6 0.2 - - + -
28Y MET* 2.8 33.1 + - - +
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Residues in contact with ALA 25 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45D PHE* 3.6 14.4 - - + -
48D LYS* 3.8 27.8 - - + -
49D ALA* 4.7 3.7 - - - -
21Y TYR 2.8 20.2 + - - +
22Y ILE* 3.1 6.9 + - + +
24Y TYR* 1.3 74.6 - - - +
26Y TRP* 1.3 62.3 + - - +
28Y MET* 3.8 2.1 - - - +
29Y VAL* 3.1 26.0 + - - +
39d ILE* 3.7 20.8 - - + +
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Residues in contact with TRP 26 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5P ASP* 4.3 6.5 - - - -
6P PRO* 3.7 38.9 - - + +
7P ALA* 3.7 18.2 - - + -
21U TYR* 3.5 25.8 - - - -
22Y ILE* 2.9 39.0 + - + +
23Y GLY* 4.0 5.2 - - - +
25Y ALA* 1.3 72.9 - - - +
27Y ALA* 1.3 61.6 + - - +
29Y VAL* 3.3 11.8 - - + +
30Y VAL* 2.9 40.6 + - + +
35d ALA* 4.7 7.3 + - - +
38d GLY* 3.8 17.0 - - - -
39d ILE* 3.6 33.0 - - + +
42d PHE* 3.8 26.0 - + + -
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Residues in contact with ALA 27 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6P PRO* 5.9 0.9 - - - -
11T PHE* 3.7 19.3 - - + -
15T GLN* 4.4 4.7 - - - +
23Y GLY 2.9 20.6 + - - +
24Y TYR* 3.7 4.5 - - + +
26Y TRP* 1.3 76.7 - - - +
28Y MET* 1.3 62.0 + - - +
30Y VAL* 3.7 5.8 - - - +
31Y VAL* 3.2 28.7 + - - +
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Residues in contact with MET 28 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45D PHE* 4.0 9.0 - - + -
49D ALA* 3.7 24.9 - - + -
11T PHE* 3.9 16.6 - - + -
14T LEU* 3.6 33.7 - - + +
15T GLN* 3.2 30.7 + - - +
18T ALA* 4.6 17.3 - - - -
24Y TYR 2.8 19.2 + - - +
25Y ALA 3.8 3.6 - - - +
27Y ALA* 1.3 77.2 - - - +
29Y VAL* 1.3 57.4 + - - +
31Y VAL* 3.1 6.6 + - - +
32Y ILE* 2.9 44.5 + - + +
37h ILE* 5.6 3.8 - - + -
41h LEU* 4.9 6.7 - - + -
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Residues in contact with VAL 29 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48D LYS 4.7 7.4 - - - +
49D ALA* 5.0 4.5 - - - +
50D SER 6.1 1.6 - - - +
25Y ALA 3.1 15.3 + - - +
26Y TRP* 3.3 34.1 - - + +
28Y MET* 1.3 76.5 - - - +
30Y VAL* 1.3 65.8 + - + +
32Y ILE* 4.1 14.1 - - + -
33Y VAL* 2.8 49.8 + - + +
39d ILE* 4.0 26.2 - - + -
42d PHE* 4.6 4.9 - - + -
43d LYS* 4.7 12.1 - - + -
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Residues in contact with VAL 30 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6P PRO* 3.7 36.3 - - + +
7P ALA 4.6 0.2 - - - +
9P ALA* 5.5 2.7 - - + -
10P ALA* 3.9 28.1 - - + +
26Y TRP* 2.9 33.3 + - + +
27Y ALA* 3.7 6.7 - - - +
29Y VAL* 1.3 77.0 - - + +
31Y VAL* 1.3 63.4 + - + +
33Y VAL* 4.1 2.5 - - - +
34Y GLY* 2.8 27.7 + - - -
42d PHE* 4.9 2.7 - - + -
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Residues in contact with VAL 31 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15T GLN* 3.9 23.1 - - - +
18T ALA* 4.5 15.9 - - + -
19T THR* 5.4 4.0 - - - +
22T ILE* 3.5 25.6 - - + +
27Y ALA 3.2 14.8 + - - +
28Y MET* 3.1 10.0 + - - +
30Y VAL* 1.3 81.8 - - + +
32Y ILE* 1.3 64.2 + - + +
34Y GLY* 3.9 0.8 - - - -
35Y ALA* 3.2 23.0 + - - +
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Residues in contact with ILE 32 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49D ALA 3.4 25.6 - - - +
50D SER 5.6 1.6 - - - +
18T ALA* 5.8 0.9 - - + -
22T ILE* 5.6 0.7 - - - -
28Y MET* 2.9 37.4 + - + +
29Y VAL* 3.7 11.0 - - + +
31Y VAL* 1.3 78.9 - - + +
33Y VAL* 1.3 59.4 + - + +
35Y ALA* 4.0 2.4 - - - +
36Y THR* 2.6 46.5 + - - +
41h LEU* 4.4 24.2 - - + -
44h LYS* 5.0 26.0 - - + +
48h LYS* 4.8 6.2 - - + +
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Residues in contact with VAL 33 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10P ALA* 5.3 0.9 - - + -
14P LEU* 4.0 14.6 - - + -
29Y VAL* 2.8 33.7 + - + +
30Y VAL 4.1 2.0 - - - +
32Y ILE* 1.3 72.6 - - + +
34Y GLY* 1.3 61.8 + - - +
36Y THR* 4.2 5.6 - - - -
37Y ILE* 2.8 41.1 + - + +
42d PHE* 3.7 27.8 - - + -
43d LYS* 5.7 4.9 - - + -
46d THR* 3.5 32.5 - - + +
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Residues in contact with GLY 34 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10P ALA* 5.7 3.5 - - - +
13P SER* 6.3 1.8 - - - -
14P LEU* 3.8 15.7 - - - +
30Y VAL 2.8 20.1 + - - -
31Y VAL* 3.9 1.6 - - - -
33Y VAL* 1.3 75.5 - - - +
35Y ALA* 1.3 55.6 + - - +
38Y GLY* 2.9 27.9 + - - -
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Residues in contact with ALA 35 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22T ILE* 3.6 43.1 - - + -
26T TRP* 4.7 8.6 + - - +
31Y VAL 3.2 13.2 + - - +
32Y ILE 4.0 1.8 - - - +
34Y GLY* 1.3 73.3 - - - +
36Y THR* 1.3 67.6 + - - +
38Y GLY* 4.9 0.2 - - - -
39Y ILE* 3.0 31.6 + - + +
48h LYS* 4.0 11.9 - - + +
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Residues in contact with THR 36 (chain Y).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32Y ILE* 2.6 36.3 + - - +
33Y VAL* 3.8 4.9 - - - -
35Y ALA* 1.3 78.3 - - - +
37Y ILE* 1.3 68.8 + - + +
39Y ILE* 3.5 3.8 + - - +
40Y LYS* 3.1 30.6 + - - +
44h LYS* 5.8 2.1 - - - +
47h SER* 5.9 2.5 - - - +
48h LYS* 3.4 32.5 - - + +
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Residues in contact with ILE 37 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14P LEU* 3.7 25.1 - - + -
28U MET* 5.6 5.6 - - + -
33Y VAL* 2.8 37.9 + - + +
36Y THR* 1.3 78.1 - - + +
38Y GLY* 1.3 56.1 + - - +
40Y LYS* 3.1 32.7 + - + +
41Y LEU* 2.7 49.0 + - + +
45d PHE* 6.3 0.7 - - + -
46d THR* 4.0 30.1 - - + +
49d ALA* 6.1 5.2 - - + -
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Residues in contact with GLY 38 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14P LEU* 3.9 7.9 - - - +
17P SER* 5.1 5.4 - - - -
21P TYR* 3.3 17.3 - - - -
26T TRP* 3.8 11.9 - - - -
34Y GLY 2.9 21.8 + - - -
35Y ALA 3.8 0.4 - - - -
37Y ILE* 1.3 77.2 - - - +
39Y ILE* 1.3 55.4 + - - +
41Y LEU* 3.3 8.1 + - - +
42Y PHE* 3.1 21.5 + - - +
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Residues in contact with ILE 39 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25T ALA* 3.7 39.9 - - + +
26T TRP* 3.6 35.4 - - + +
29T VAL* 4.0 23.1 - - + -
35Y ALA* 3.0 23.4 + - + +
36Y THR 3.7 3.6 - - - +
38Y GLY* 1.3 71.9 - - - +
40Y LYS* 1.3 61.1 + - - +
42Y PHE* 3.0 3.8 + - - +
43Y LYS* 2.8 33.9 + - + +
48h LYS* 3.6 33.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 40 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36Y THR* 3.1 20.1 + - - +
37Y ILE* 3.1 33.4 + - + +
39Y ILE* 1.3 77.6 - - - +
41Y LEU* 1.3 56.9 + - + +
43Y LYS* 3.1 20.7 + - + +
44Y LYS* 2.9 44.9 + - + +
49d ALA 5.4 2.0 - - - +
50d SER* 3.6 35.5 + - - +
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Residues in contact with LEU 41 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14P LEU* 3.6 29.6 - - + +
17P SER* 4.3 8.5 - - - -
18P ALA* 3.9 24.9 - - + +
21P TYR* 3.7 16.6 - - + +
28U MET* 4.9 5.8 - - - -
32U ILE* 4.4 25.4 - - + -
37Y ILE* 2.7 40.3 + - + +
38Y GLY* 3.5 6.5 - - - +
40Y LYS* 1.3 75.3 - - + +
42Y PHE* 1.3 58.3 + - - +
44Y LYS* 3.1 13.8 + - + +
45Y PHE* 2.9 24.9 + - - +
48Y LYS* 5.3 1.6 + - - -
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Residues in contact with PHE 42 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7K ALA* 3.5 33.0 - - + -
10K ALA* 3.6 26.7 - - + -
11K PHE* 4.9 1.6 - - + -
14K LEU* 5.4 0.2 - - + -
21P TYR* 3.6 12.0 - + + -
24P TYR* 5.3 1.1 - + - -
26T TRP* 3.8 24.0 - + + -
29T VAL* 4.6 14.4 - - + -
30T VAL* 4.9 2.0 - - - -
33T VAL* 3.7 40.8 - - + -
38Y GLY 3.1 12.8 + - - +
39Y ILE 3.0 9.7 + - - +
41Y LEU* 1.3 74.7 - - - +
43Y LYS* 1.3 64.1 + - - +
45Y PHE* 3.1 43.5 - + + +
46Y THR* 3.2 10.6 + - - +
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Residues in contact with LYS 43 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29T VAL* 4.7 12.8 - - + -
33T VAL* 5.7 3.1 - - + -
39Y ILE* 2.8 29.1 + - + +
40Y LYS* 3.2 21.6 - - + +
42Y PHE* 1.3 75.7 - - + +
44Y LYS* 1.3 62.1 + - + +
46Y THR* 2.5 27.5 + - - +
47Y SER* 3.1 9.5 + - - -
48h LYS 5.3 1.1 - - - +
50h SER* 2.8 35.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 44 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32U ILE* 5.0 24.9 - - + +
36U THR* 5.8 1.8 - - - +
40Y LYS* 2.9 31.6 + - + +
41Y LEU* 3.1 22.0 + - + +
43Y LYS* 1.3 74.0 - - + +
45Y PHE* 1.3 60.5 + - - +
47Y SER* 3.3 9.9 + - - -
48Y LYS* 2.8 45.8 + - + +
50d SER* 4.0 20.7 + - - +
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Residues in contact with PHE 45 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11K PHE* 3.7 22.0 - + + -
14K LEU* 4.3 14.8 - - + -
21P TYR* 4.1 13.0 - - + +
24P TYR* 3.4 31.4 - - + -
25P ALA* 3.5 20.6 - - - -
28P MET* 4.0 15.5 - - + -
37T ILE* 6.1 0.7 - - + -
41Y LEU 2.9 11.8 + - - +
42Y PHE* 3.1 42.1 + + + +
44Y LYS* 1.3 75.9 - - - +
46Y THR* 1.3 71.2 + - + +
48Y LYS* 3.1 12.6 + - - +
49Y ALA* 2.8 46.8 + - + +
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Residues in contact with THR 46 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33T VAL* 3.5 41.0 - - + +
37T ILE* 4.0 21.3 - - + +
42Y PHE* 3.2 13.7 + - + +
43Y LYS* 2.5 25.2 + - - +
45Y PHE* 1.3 89.0 - - + +
47Y SER* 1.3 53.6 + - - +
49Y ALA* 3.9 6.4 - - - +
50Y SER* 2.6 32.7 + - - -
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Residues in contact with SER 47 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36U THR* 5.9 2.6 - - - +
43Y LYS 3.1 8.4 + - - -
44Y LYS* 3.4 17.0 - - - -
45Y PHE 3.1 0.2 - - - -
46Y THR* 1.3 80.1 + - - +
48Y LYS* 1.3 66.7 + - - +
50Y SER* 3.0 24.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 48 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18P ALA 5.1 0.6 + - - -
21P TYR* 4.5 2.0 + - - +
22P ILE* 3.4 37.4 - - - +
25P ALA* 3.8 21.1 - - + -
29P VAL* 4.6 3.5 - - - +
32U ILE* 5.1 5.6 + - - +
35U ALA* 4.0 7.1 - - + +
36U THR* 3.4 51.5 + - + +
39U ILE* 3.6 30.8 - - + +
43U LYS* 5.3 1.2 - - - +
41Y LEU 5.3 1.6 + - - -
44Y LYS* 2.8 38.6 + - + +
45Y PHE* 3.6 6.4 - - - +
47Y SER* 1.3 75.2 - - - +
49Y ALA* 1.3 59.8 + - - +
50Y SER* 3.1 5.2 + - - +
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Residues in contact with ALA 49 (chain Y).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25P ALA* 4.7 6.9 - - - +
28P MET* 3.7 27.4 - - + -
29P VAL* 5.0 6.2 - - - +
32P ILE* 3.4 24.3 - - - +
37T ILE* 6.1 5.6 - - + -
40T LYS* 5.4 2.1 - - - +
44T LYS* 5.9 0.7 - - - -
45Y PHE* 2.8 30.4 + - + +
46Y THR* 4.1 6.5 - - - +
47Y SER 3.1 0.2 - - - -
48Y LYS* 1.3 75.8 - - - +
50Y SER* 1.3 60.7 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il