Contacts of the helix formed by residues 26 - 73 (chain A) in PDB entry 2NCA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 26 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A THR* 1.3 80.0 - - + +
27A SER* 1.3 67.0 + - - +
28A LEU 3.0 3.8 + - - -
29A PHE* 3.1 11.5 + - + +
30A ARG* 3.0 32.8 + - + +
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Residues in contact with SER 27 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A ASN 4.3 2.2 - - - -
23A ILE* 3.6 17.6 - - - -
24A ASP* 2.9 28.5 + - - +
25A THR 3.6 3.8 + - - -
26A ALA* 1.3 75.3 + - - +
28A LEU* 1.3 52.2 + - - +
30A ARG* 4.2 7.4 - - - +
31A TRP* 2.8 53.9 + - - +
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Residues in contact with LEU 28 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A ILE* 3.5 43.2 - - + +
25A THR 3.8 13.1 + - - +
26A ALA 3.0 0.4 + - - -
27A SER* 1.3 80.1 + - - +
29A PHE* 1.3 72.2 + - + +
31A TRP* 3.8 1.6 - - - +
32A ARG* 2.9 37.2 + - + +
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Residues in contact with PHE 29 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A THR 4.0 17.5 - - - -
26A ALA* 3.1 9.4 + - + +
28A LEU* 1.3 93.1 - - + +
30A ARG* 1.3 64.8 + - + +
32A ARG* 3.1 7.8 + - - +
33A HIS* 3.0 41.5 + + + +
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Residues in contact with ARG 30 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26A ALA* 3.0 26.2 + - + +
27A SER* 3.8 7.6 - - - +
29A PHE* 1.3 77.7 - - + +
31A TRP* 1.3 58.6 + - + +
33A HIS* 4.0 3.3 - - - +
34A GLN* 3.0 57.2 + - - +
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Residues in contact with TRP 31 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A ASN* 3.8 16.4 + - + +
23A ILE* 3.7 20.4 - - + -
27A SER* 2.8 41.2 + - - +
28A LEU 3.9 2.5 - - - +
30A ARG* 1.3 74.6 - - + +
32A ARG* 1.3 53.5 + - - +
34A GLN* 3.4 20.4 - - + -
35A ALA* 2.8 39.6 + - + +
115A ASN* 5.1 12.8 - - - -
116A VAL* 6.1 2.0 - - + -
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Residues in contact with ARG 32 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A LEU* 2.9 24.7 + - + +
29A PHE* 3.1 10.1 + - + +
31A TRP* 1.3 78.6 - - - +
33A HIS* 1.3 66.3 + - + +
35A ALA* 3.5 4.6 - - - +
36A ARG* 3.0 45.5 + - - +
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Residues in contact with HIS 33 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A PHE* 3.0 34.5 + + + +
30A ARG* 4.0 3.8 - - - +
32A ARG* 1.3 80.8 - - + +
34A GLN* 1.3 64.9 + - + +
36A ARG* 3.3 11.0 + - + +
37A VAL* 3.0 34.3 + - + +
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Residues in contact with GLN 34 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A ARG* 3.0 53.4 + - - +
31A TRP* 3.4 29.0 + - + +
33A HIS* 1.3 78.0 - - + +
35A ALA* 1.3 58.2 + - - +
37A VAL* 3.4 6.5 + - - +
38A GLU* 2.8 31.1 + - - +
114A TRP 5.5 1.0 - - - +
115A ASN 4.9 4.9 - - - +
116A VAL 4.7 3.0 + - - -
117A ASP* 3.7 38.0 + - - +
118A THR* 5.8 0.6 + - - -
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Residues in contact with ALA 35 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A TRP* 2.8 27.2 + - + +
32A ARG* 3.5 6.5 - - - +
34A GLN* 1.3 73.5 - - - +
36A ARG* 1.3 63.7 + - - +
38A GLU* 3.0 13.1 + - - +
39A ARG* 3.0 42.4 + - - +
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Residues in contact with ARG 36 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ARG* 3.0 35.1 + - - +
33A HIS* 3.6 12.0 - - - +
35A ALA* 1.3 75.3 - - - +
37A VAL* 1.3 61.3 + - + +
39A ARG* 3.5 4.3 + - - +
40A MET* 2.8 35.4 + - + +
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Residues in contact with VAL 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A HIS* 3.0 24.2 + - + +
34A GLN* 3.7 6.1 - - - +
36A ARG* 1.3 77.0 - - + +
38A GLU* 1.3 64.2 + - - +
40A MET* 3.3 25.3 - - + +
41A GLU* 3.0 24.4 + - - +
112A MET* 4.6 0.2 - - - +
114A TRP* 4.8 19.3 - - + +
117A ASP* 5.7 5.4 - - - +
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Residues in contact with GLU 38 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A GLN 2.8 19.8 + - - +
35A ALA* 3.0 10.0 + - - +
37A VAL* 1.3 77.3 - - - +
39A ARG* 1.3 86.0 + - - +
42A GLN* 2.9 48.7 + - - +
110A LYS 5.3 2.5 - - - -
112A MET* 3.1 27.0 - - + +
114A TRP* 5.2 2.2 - - - +
115A ASN* 2.7 42.4 + - + +
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Residues in contact with ARG 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A ALA* 3.0 29.2 + - - +
36A ARG* 4.1 3.6 - - - +
38A GLU* 1.3 95.9 + - - +
40A MET* 1.3 55.4 + - - +
42A GLN* 4.1 8.7 - - + +
43A PHE* 2.7 41.5 + - + +
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Residues in contact with MET 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36A ARG* 2.8 24.5 + - + +
37A VAL* 3.3 33.7 - - + +
38A GLU 3.1 0.2 - - - -
39A ARG* 1.3 77.3 - - - +
41A GLU* 1.3 82.7 + - + +
43A PHE* 4.2 1.0 - - - +
44A GLN* 2.9 49.2 + - + +
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Residues in contact with GLU 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A VAL* 3.0 13.8 + - - +
38A GLU 4.2 1.6 - - - +
40A MET* 1.3 95.3 - - + +
42A GLN* 1.3 57.9 + - - +
44A GLN* 3.8 3.7 - - - +
45A LYS* 2.9 31.2 + - - +
109A GLU* 4.0 0.8 - - - +
112A MET* 4.4 9.6 - - + -
114A TRP* 3.1 32.9 + - + -
124A PHE* 3.5 44.7 - - + +
126A LYS* 6.0 3.8 - - - +
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Residues in contact with GLN 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A GLU* 2.9 36.2 + - - +
39A ARG* 4.0 8.2 - - + +
41A GLU* 1.3 74.0 - - - +
43A PHE* 1.3 66.1 + - + +
45A LYS 3.2 0.5 + - - -
46A GLU* 3.0 32.0 + - - +
106A ARG* 5.8 1.6 - - - +
109A GLU* 2.6 55.7 - - + +
110A LYS* 3.2 37.2 - - - +
112A MET* 3.8 11.1 - - - +
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Residues in contact with PHE 43 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A ARG* 2.7 28.2 + - + +
40A MET* 4.2 1.6 - - - +
42A GLN* 1.3 74.0 - - - +
44A GLN* 1.3 64.1 + - + +
46A GLU* 3.1 26.1 - - + +
47A LYS* 2.8 47.7 + - + +
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Residues in contact with GLN 44 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A MET* 2.9 40.4 + - + +
41A GLU* 3.8 5.8 - - - +
43A PHE* 1.3 84.8 - - + +
45A LYS* 1.3 62.3 + - - +
47A LYS* 3.4 18.3 + - - +
48A GLU* 3.0 26.8 + - - +
126A LYS* 4.4 21.6 - - - +
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Residues in contact with LYS 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A GLU 2.9 17.2 + - - +
44A GLN* 1.3 72.5 - - - +
46A GLU* 1.3 68.2 + - - +
47A LYS 3.0 0.5 + - - -
48A GLU* 3.1 26.0 + - - +
49A GLU* 3.0 45.3 + - + +
105A MET* 6.3 0.9 - - + -
109A GLU* 3.0 28.3 - - - +
124A PHE* 3.5 26.9 - - + -
125A SER* 3.1 22.6 + - - +
126A LYS* 4.2 4.8 + - - +
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Residues in contact with GLU 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A GLN* 3.0 40.0 + - - +
43A PHE* 3.1 35.4 - - + +
45A LYS* 1.3 76.9 - - - +
47A LYS* 1.3 62.2 + - - +
49A GLU* 3.5 2.1 + - - +
50A LEU* 2.9 36.3 + - + +
105A MET* 4.1 27.1 - - + -
106A ARG* 4.5 30.6 + - + +
109A GLU* 3.6 7.1 + - + +
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Residues in contact with LYS 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A PHE* 2.8 39.7 + - + +
44A GLN* 3.4 18.5 + - - +
45A LYS 3.0 0.2 - - - -
46A GLU* 1.3 76.5 - - + +
48A GLU* 1.3 89.0 + - + +
50A LEU* 2.9 15.9 + - - +
51A ASP* 3.0 40.3 + - - +
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Residues in contact with GLU 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A GLN 3.0 15.0 + - - +
45A LYS* 3.7 19.8 + - - +
47A LYS* 1.3 94.3 - - + +
49A GLU* 1.3 57.3 + - + +
51A ASP* 4.1 3.2 - - - +
52A ARG* 2.9 45.5 + - - +
126A LYS* 3.3 29.3 - - - +
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Residues in contact with GLU 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A LYS* 3.0 38.1 + - + +
46A GLU 3.7 0.9 - - - +
48A GLU* 1.3 76.3 - - + +
50A LEU* 1.3 54.8 + - - +
52A ARG* 3.7 17.6 + - - +
53A GLY* 2.8 31.5 + - - -
101A LYS* 4.5 16.9 + - - +
105A MET* 3.5 32.9 - - + +
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Residues in contact with LEU 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A GLU* 2.9 24.3 + - + +
47A LYS* 2.9 8.8 + - - +
49A GLU* 1.3 76.7 - - - +
51A ASP* 1.3 57.4 + - - +
53A GLY* 3.7 0.6 - - - -
54A CYS* 2.7 44.8 + - + +
98A TRP* 5.3 6.1 + - + -
101A LYS* 5.2 4.0 - - - +
102A LEU* 4.7 13.2 - - + -
105A MET* 3.9 19.7 - - + -
106A ARG* 5.3 9.2 - - - +
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Residues in contact with ASP 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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47A LYS* 3.0 38.0 + - - +
48A GLU* 4.2 3.8 - - - +
50A LEU* 1.3 78.0 - - - +
52A ARG* 1.3 57.6 + - - +
54A CYS* 3.8 6.0 - - - +
55A ARG* 3.0 49.3 + - - +
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Residues in contact with ARG 52 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A GLU* 2.9 33.9 + - - +
49A GLU* 3.7 19.3 + - - +
51A ASP* 1.3 78.5 - - - +
53A GLY* 1.3 57.8 + - - +
55A ARG* 4.1 2.9 - - - +
56A GLU* 2.9 47.8 + - + +
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Residues in contact with GLY 53 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A GLU 2.8 20.1 + - - -
50A LEU 3.8 0.4 - - - -
52A ARG* 1.3 75.6 - - - +
54A CYS* 1.3 56.4 + - - +
56A GLU* 4.4 2.9 - - - -
57A CYS* 2.9 33.6 + - - +
98A TRP* 3.1 30.8 + - - -
101A LYS* 5.8 1.3 - - - -
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Residues in contact with CYS 54 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50A LEU* 2.7 26.7 + - + +
51A ASP* 3.8 6.7 - - - +
53A GLY* 1.3 75.5 - - - +
55A ARG* 1.3 62.6 + - + +
57A CYS* 3.9 1.9 - - - +
58A LYS* 3.0 36.9 + - - +
98A TRP* 4.0 3.7 - - - +
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Residues in contact with ARG 55 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A ASP* 3.0 32.3 + - - +
52A ARG* 4.2 2.7 - - - +
54A CYS* 1.3 76.3 - - + +
56A GLU* 1.3 61.1 + - - +
58A LYS* 3.9 5.5 - - - +
59A ARG* 2.9 31.0 + - - +
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Residues in contact with GLU 56 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A ARG* 2.9 35.8 + - + +
53A GLY* 4.2 4.9 - - - +
55A ARG* 1.3 77.5 - - - +
57A CYS* 1.3 63.2 - - - +
59A ARG* 3.3 11.0 + - - +
60A LYS* 3.0 34.2 + - + +
98A TRP* 5.2 7.6 - - + -
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Residues in contact with CYS 57 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53A GLY 2.9 22.4 + - - +
54A CYS* 3.9 2.9 - - - +
56A GLU* 1.3 77.5 - - - +
58A LYS* 1.3 54.7 + - - +
60A LYS* 4.8 3.1 - - - -
61A VAL* 2.7 48.6 + - - +
94A GLU* 3.4 36.6 - - - -
98A TRP* 3.7 23.1 - - + +
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Residues in contact with LYS 58 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54A CYS* 3.0 25.5 + - - +
55A ARG* 3.9 4.9 - - - +
57A CYS* 1.3 76.1 - - - +
59A ARG* 1.3 55.6 + - - +
61A VAL* 4.0 4.2 - - - +
62A ALA* 2.7 38.2 + - + +
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Residues in contact with ARG 59 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A ARG 2.9 19.3 + - - +
56A GLU* 3.5 10.2 + - - +
58A LYS* 1.3 78.4 - - - +
60A LYS* 1.3 86.9 + - - +
62A ALA* 3.3 5.0 - - - +
63A GLU* 3.0 44.5 + - + +
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Residues in contact with LYS 60 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A GLU* 3.0 26.1 + - + +
57A CYS* 3.8 3.4 - - - +
59A ARG* 1.3 104.0 - - - +
61A VAL* 1.3 57.0 + - - +
63A GLU* 3.1 4.0 + - + +
64A CYS* 2.8 52.9 + - - +
90A GLN* 4.6 14.1 + - - +
94A GLU* 4.9 9.6 + - - +
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Residues in contact with VAL 61 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A CYS* 2.7 51.7 + - - +
58A LYS* 4.0 3.8 - - - +
60A LYS* 1.3 72.6 - - - +
62A ALA* 1.3 53.9 + - - +
64A CYS* 4.0 4.9 - - - +
65A GLN* 2.8 48.8 + - + +
90A GLN* 5.3 2.0 - - - -
91A LEU* 3.5 30.7 - - + -
94A GLU* 4.0 19.5 - - + +
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Residues in contact with ALA 62 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A LYS* 2.7 31.3 + - + +
59A ARG* 3.3 6.5 - - - +
61A VAL* 1.3 73.5 - - - +
63A GLU* 1.3 68.0 + - + +
65A GLN* 3.6 8.9 - - - +
66A ARG* 3.0 38.3 + - - +
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Residues in contact with GLU 63 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A ARG* 3.0 37.8 + - + +
60A LYS* 3.8 6.1 - - + +
62A ALA* 1.3 77.2 - - + +
64A CYS* 1.3 65.7 - - - +
66A ARG* 3.1 17.9 + - - +
67A LYS* 2.9 31.5 + - + +
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Residues in contact with CYS 64 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60A LYS* 2.8 36.6 + - - +
61A VAL* 4.0 5.2 - - - +
63A GLU* 1.3 72.5 - - - +
65A GLN* 1.3 62.7 + - - +
67A LYS* 3.1 13.2 + - - +
68A LEU* 2.9 34.7 + - + +
90A GLN* 3.3 36.1 - - + +
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Residues in contact with GLN 65 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A VAL* 2.8 34.7 + - + +
62A ALA* 3.6 7.6 - - - +
64A CYS* 1.3 72.8 - - - +
66A ARG* 1.3 57.9 + - + +
68A LEU* 3.2 18.6 - - + +
69A LYS* 2.8 45.7 + - + +
87A GLU* 5.1 6.5 + - - +
91A LEU* 6.1 4.5 - - + +
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Residues in contact with ARG 66 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62A ALA* 3.0 30.4 + - - +
63A GLU* 3.5 15.7 - - - +
65A GLN* 1.3 80.4 + - + +
67A LYS* 1.3 55.6 + - - +
69A LYS* 3.7 20.2 - - - +
70A GLU* 2.9 37.2 + - - +
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Residues in contact with LYS 67 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A GLU* 2.9 20.9 + - + +
64A CYS* 3.1 15.4 + - - +
66A ARG* 1.3 73.3 - - - +
68A LEU* 1.3 66.0 + - - +
69A LYS 3.0 1.5 + - - -
70A GLU* 3.1 5.8 + - - +
71A LEU* 2.9 26.2 + - - +
83A ARG* 5.6 4.0 - - - +
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Residues in contact with LEU 68 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A CYS* 2.9 38.0 + - + +
65A GLN* 3.2 18.8 - - + +
67A LYS* 1.3 75.1 - - - +
69A LYS* 1.3 57.3 + - + +
71A LEU* 4.1 0.8 - - - +
72A GLU* 2.8 38.8 + - - +
83A ARG* 4.4 37.7 - - + +
86A ALA* 5.3 2.7 - - + -
87A GLU* 3.1 60.3 - - + +
90A GLN* 5.7 2.9 - - + -
91A LEU* 5.7 1.3 - - + -
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Residues in contact with LYS 69 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A GLN* 2.8 27.0 + - + +
66A ARG* 3.7 23.6 - - - +
68A LEU* 1.3 84.0 - - + +
70A GLU* 1.3 74.7 + - - +
72A GLU* 3.4 25.0 + - - +
73A VAL* 3.6 13.0 - - - +
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Residues in contact with GLU 70 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A ARG* 2.9 22.1 + - - +
67A LYS* 3.7 4.5 - - - +
69A LYS* 1.3 88.4 - - - +
71A LEU* 1.3 58.3 + - - +
73A VAL* 2.9 28.9 - - + +
74A ALA* 4.9 1.0 - - - +
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Residues in contact with LEU 71 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67A LYS 2.9 16.3 + - - +
68A LEU 4.1 2.2 - - - +
70A GLU* 1.3 76.5 - - - +
72A GLU* 1.3 53.3 + - - +
73A VAL 2.9 5.6 - - - -
74A ALA* 2.7 45.6 + - + +
75A GLU 5.2 3.1 - - - +
79A ALA* 5.9 5.4 - - + -
83A ARG* 4.2 33.6 - - + +
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Residues in contact with GLU 72 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A LEU* 2.8 22.9 + - - +
69A LYS* 3.4 19.9 + - - +
71A LEU* 1.3 75.9 - - - +
73A VAL* 1.3 59.5 + - + +
74A ALA 4.0 4.6 - - - +
80A GLU* 5.3 14.1 - - + +
83A ARG* 5.0 13.4 - - + +
87A GLU* 5.2 7.3 - - - +
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Residues in contact with VAL 73 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A LYS* 3.6 15.7 - - + +
70A GLU* 2.9 26.0 - - + +
71A LEU 2.9 0.6 - - - -
72A GLU* 1.3 79.6 - - + +
74A ALA* 1.3 66.9 + - + +
75A GLU* 3.6 2.3 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il