Contacts of the helix formed by residues 127 - 154 (chain H) in PDB entry 2ONK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 127 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123H LYS* 3.2 24.7 - - + +
124H PHE 3.1 14.3 - - - +
125H VAL 3.0 3.5 - - - +
126H ASP* 1.3 80.6 - - - +
128H LEU* 1.3 69.7 + - - +
129H PRO* 3.1 4.9 - - + -
130H GLY* 2.7 13.7 + - - -
131H ILE* 3.0 9.9 + - - +
207H ALA* 3.4 1.6 - - - +
210H PRO* 3.9 8.3 - - - -
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Residues in contact with LEU 128 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53H THR* 4.3 20.2 - - + +
56H TYR* 3.3 34.5 - - + +
57H ALA* 3.6 32.1 - - + -
60H ILE* 4.4 9.9 - - + -
127H ALA* 1.3 69.2 - - - +
129H PRO* 1.3 64.5 - - + +
131H ILE* 2.7 10.6 + - + -
132H VAL* 2.5 40.8 + - + +
210H PRO* 4.6 4.9 - - + +
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Residues in contact with PRO 129 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122H LEU* 3.8 26.9 - - + -
123H LYS 3.5 15.5 - - - +
124H PHE* 3.0 31.9 - - + -
127H ALA* 3.2 9.2 - - + -
128H LEU* 1.3 94.3 - - + +
130H GLY* 1.3 52.7 + - - +
132H VAL* 3.4 7.8 - - + +
133H VAL* 2.6 39.7 + - - +
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Residues in contact with GLY 130 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110H PHE* 6.2 0.2 - - - -
124H PHE* 3.0 30.4 + - - -
127H ALA 2.7 11.6 + - - -
129H PRO* 1.3 72.3 - - - +
131H ILE* 1.3 50.0 + - - -
133H VAL* 3.2 3.8 + - - +
134H ALA* 2.7 35.5 + - - +
206H ILE* 3.5 23.7 - - - +
207H ALA* 4.7 1.1 - - - -
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Residues in contact with ILE 131 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53H THR* 4.3 14.1 - - + -
57H ALA* 3.6 23.1 - - + -
127H ALA 3.0 9.3 + - - +
128H LEU* 2.7 17.8 + - + +
130H GLY* 1.3 69.8 - - - +
132H VAL* 1.3 56.5 + - - +
134H ALA* 3.0 8.1 + - - +
135H MET* 2.8 41.8 + - + +
203H VAL* 4.2 6.1 - - + -
206H ILE* 5.4 0.2 - - - -
207H ALA* 4.1 14.4 - - + +
210H PRO* 3.1 37.2 - - + +
212H ILE* 3.1 35.7 - - + -
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Residues in contact with VAL 132 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57H ALA* 3.6 30.3 - - + +
60H ILE* 3.9 22.9 - - + -
61H SER* 4.3 8.1 - - - -
64H ILE* 3.8 29.8 - - + -
128H LEU* 2.5 25.0 + - + +
129H PRO* 3.4 11.2 - - + +
131H ILE* 1.3 70.1 - - - +
133H VAL* 1.3 70.0 + - + +
134H ALA 2.8 1.4 + - - -
135H MET* 2.8 5.3 + - - -
136H LEU* 2.6 27.9 + - + +
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Residues in contact with VAL 133 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106H LEU* 3.4 35.5 - - + +
110H PHE* 3.7 30.1 - - + -
124H PHE* 3.6 25.4 - - + -
129H PRO 2.6 21.7 + - - +
130H GLY* 3.5 6.7 - - - +
132H VAL* 1.3 76.7 - - + +
134H ALA* 1.3 64.6 + - - +
136H LEU* 4.2 8.1 - - + -
137H PHE* 3.3 15.8 + - - +
206H ILE* 4.7 2.9 - - + -
19I PHE* 3.6 10.9 - - + -
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Residues in contact with ALA 134 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106H LEU* 3.6 6.0 - - - +
130H GLY 2.7 11.2 + - - +
131H ILE* 3.1 10.1 - - - +
132H VAL 2.8 2.8 + - - -
133H VAL* 1.3 76.2 - - - +
135H MET* 1.3 60.6 + - - +
137H PHE* 3.5 2.3 + - - +
138H VAL* 2.8 29.1 + - - +
202H ALA* 4.1 2.0 - - - -
203H VAL* 3.5 31.2 - - + +
206H ILE* 3.2 28.5 - - + -
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Residues in contact with MET 135 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54H THR* 4.2 15.3 - - + +
57H ALA 3.8 2.2 - - - +
58H ALA* 3.3 36.8 - - + -
61H SER* 4.1 9.6 - - - -
131H ILE* 2.8 42.6 + - + +
132H VAL 2.8 3.2 + - - +
134H ALA* 1.3 69.9 - - - +
136H LEU* 1.3 68.4 + - - +
138H VAL* 3.1 8.8 + - - +
139H SER* 2.7 23.8 + - - -
196H GLY* 2.8 44.6 - - - +
197H ILE* 3.9 4.5 - - - +
199H GLU* 4.8 2.5 - - + +
203H VAL* 4.2 10.3 - - + -
212H ILE* 4.3 13.7 - - + -
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Residues in contact with LEU 136 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61H SER* 3.1 39.7 - - - +
64H ILE* 3.9 32.1 - - + -
65H ALA* 4.1 6.7 - - + +
132H VAL* 2.6 23.4 + - + +
133H VAL* 5.1 3.1 - - + -
135H MET* 1.3 69.6 - - - +
137H PHE* 1.3 54.8 + - - +
139H SER* 2.6 28.3 + - - +
140H VAL* 2.8 37.0 + - + +
16I ILE* 5.3 2.9 - - + -
19I PHE* 3.4 35.0 - - + -
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Residues in contact with PHE 137 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94H PRO* 3.2 47.3 - - + +
97H ILE* 4.1 10.3 - - + -
102H ALA* 3.6 34.1 - - + -
105H ALA* 6.1 0.9 - - + -
106H LEU* 3.9 22.7 - - + -
133H VAL 3.3 17.0 + - - +
134H ALA 3.7 3.1 - - - +
136H LEU* 1.3 78.7 - - - +
138H VAL* 1.3 65.2 + - + +
139H SER 3.7 0.2 + - - -
140H VAL* 4.4 3.3 - - - +
141H PRO* 3.8 3.6 - - - +
19I PHE* 3.3 16.2 - + + -
20I VAL* 3.6 38.9 - - + +
23I PRO* 3.9 14.1 - - + -
24I VAL* 3.8 17.7 - - + -
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Residues in contact with VAL 138 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94H PRO* 4.6 12.7 - - - +
99H HIS* 4.7 6.1 - - - +
102H ALA* 5.4 1.8 - - + -
134H ALA 2.8 23.8 - - - +
135H MET* 3.7 5.8 - - - +
136H LEU 2.7 4.9 + - - -
137H PHE* 1.3 84.6 - - + +
139H SER* 1.3 57.0 + - - +
140H VAL 3.7 0.2 - - - -
141H PRO* 4.0 11.5 - - - +
142H ILE* 4.7 3.1 - - - +
195H ARG* 2.7 54.1 + - + +
199H GLU* 4.0 8.7 - - + +
202H ALA* 3.9 20.0 - - + -
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Residues in contact with SER 139 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61H SER* 3.8 9.9 + - - -
65H ALA* 5.8 0.4 - - - -
135H MET 2.7 23.1 + - - -
136H LEU* 2.6 14.0 + - - +
138H VAL* 1.3 71.7 - - - +
140H VAL* 1.3 64.3 + - - +
141H PRO* 3.3 3.6 - - - -
142H ILE* 2.9 17.6 + - - +
143H TYR* 3.1 8.8 + - - +
192H SER* 3.4 37.3 + - - -
195H ARG* 3.6 18.6 - - - -
196H GLY 4.4 1.5 + - - -
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Residues in contact with VAL 140 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65H ALA* 4.9 12.1 - - + +
69H GLY* 5.9 0.7 - - - -
91H VAL* 5.6 2.0 - - + +
136H LEU* 2.8 55.4 + - + +
137H PHE 4.3 1.6 - - - +
139H SER* 1.3 69.9 + - - +
141H PRO* 1.3 72.0 - - + +
143H TYR* 3.1 4.7 + - - +
144H ILE* 3.0 39.8 + - + +
16I ILE* 3.6 31.4 - - + -
19I PHE* 4.3 4.0 - - + -
20I VAL* 4.1 15.0 - - + -
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Residues in contact with PRO 141 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91H VAL* 3.0 37.7 - - + +
92H ASP* 4.6 4.0 - - - +
94H PRO* 3.5 27.4 - - + -
95H VAL* 4.3 18.4 - - + -
137H PHE 3.8 5.4 - - - +
138H VAL 4.0 10.8 - - - +
139H SER 3.3 1.1 - - - -
140H VAL* 1.3 98.3 - - + +
142H ILE* 1.3 72.4 + - + +
143H TYR 3.0 0.5 + - - -
144H ILE* 4.4 0.4 - - + -
145H ASN* 3.0 29.0 + - - +
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Residues in contact with ILE 142 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95H VAL* 6.3 2.0 - - + -
138H VAL 4.7 3.4 - - - +
139H SER* 2.9 16.6 + - - +
141H PRO* 1.3 85.4 - - + +
143H TYR* 1.3 61.2 + - - +
145H ASN* 4.3 3.5 - - - +
146H GLN* 3.6 18.5 + - - +
188H GLY 4.8 0.2 - - - +
191H MET* 3.9 20.0 - - + +
192H SER* 3.9 24.2 - - - +
195H ARG* 4.0 33.7 - - + +
95I VAL* 6.2 4.3 - - + -
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Residues in contact with TYR 143 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65H ALA* 3.9 24.0 - - + -
66H VAL* 3.3 33.6 - - + +
69H GLY* 4.3 4.3 - - - -
70H THR* 2.5 35.3 + - - -
139H SER 3.1 4.4 + - - +
140H VAL 3.1 8.0 + - - +
142H ILE* 1.3 73.5 - - - +
144H ILE* 1.3 80.2 + - + +
146H GLN* 2.8 16.1 + - - +
147H ALA* 2.8 25.3 + - + +
185H ILE* 3.0 47.4 - - + +
188H GLY* 3.4 25.6 - - - -
189H ALA* 3.4 6.1 - - - -
192H SER* 4.1 14.8 - - - -
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Residues in contact with ILE 144 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65H ALA* 6.4 0.2 - - + -
69H GLY* 3.8 25.6 - - - +
72H LEU* 3.5 25.8 - - + -
73H ALA* 3.5 15.3 - - + +
76H LEU* 4.4 17.7 - - + -
91H VAL* 4.0 25.8 - - + -
140H VAL* 3.0 32.7 + - + +
141H PRO 3.7 2.7 - - - +
143H TYR* 1.3 84.4 - - + +
145H ASN* 1.3 54.9 + - - +
147H ALA* 3.0 6.0 + - - +
148H LYS* 2.7 34.1 + - + +
16I ILE* 5.0 4.3 - - + -
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Residues in contact with ASN 145 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91H VAL* 3.9 21.3 - - - +
92H ASP* 3.9 18.9 + - - +
141H PRO 3.0 14.6 + - - +
142H ILE* 4.3 4.5 - - - +
144H ILE* 1.3 81.9 - - - +
146H GLN* 1.3 63.4 + - - +
148H LYS* 3.2 24.2 + - - +
149H GLU* 3.1 29.4 + - - +
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Residues in contact with GLN 146 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142H ILE 3.6 7.2 + - - +
143H TYR 2.8 13.2 + - - +
145H ASN* 1.3 72.3 - - - +
147H ALA* 1.3 64.0 + - - +
149H GLU* 3.3 24.6 + - - +
150H GLY 3.1 16.1 + - - -
184H HIS* 3.7 35.2 + - - +
187H ALA* 4.1 9.4 - - - +
188H GLY* 3.5 16.8 - - - -
191H MET* 3.4 33.8 - - - +
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Residues in contact with ALA 147 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70H THR* 4.7 1.1 - - - -
73H ALA* 3.4 20.4 - - + -
143H TYR* 2.8 41.3 + - + +
144H ILE 3.4 3.6 - - - +
146H GLN* 1.3 76.9 - - - +
148H LYS* 1.3 62.0 + - - +
150H GLY* 3.1 9.7 + - - +
151H PHE* 3.1 28.4 + - + -
181H SER* 5.2 0.5 - - - -
184H HIS* 4.6 8.2 + - - -
185H ILE* 4.9 6.6 - - + +
188H GLY* 5.1 0.4 - - - -
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Residues in contact with LYS 148 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73H ALA* 3.4 27.7 - - + +
76H LEU* 3.9 31.7 - - + +
77H ALA* 3.7 16.9 - - + +
88H GLU* 3.9 19.7 + - - +
144H ILE* 2.7 15.8 + - - +
145H ASN* 3.3 29.0 + - - +
146H GLN 3.1 0.2 - - - -
147H ALA* 1.3 69.2 - - - +
149H GLU* 1.3 65.8 + - + +
150H GLY 2.8 4.9 + - - -
151H PHE* 3.0 3.5 + - - -
152H ALA* 2.7 25.5 + - + +
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Residues in contact with GLU 149 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145H ASN* 3.1 13.8 + - - +
146H GLN* 3.7 26.1 + - - +
148H LYS* 1.3 80.7 - - + +
150H GLY* 1.3 64.7 + - - +
152H ALA* 3.6 10.0 - - + +
153H SER* 3.0 20.8 + - - -
184H HIS* 4.2 14.3 + - + +
149I GLU* 4.2 23.8 - - - +
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Residues in contact with GLY 150 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146H GLN 3.1 6.1 + - - -
147H ALA 3.1 6.6 + - - -
148H LYS 2.8 2.6 + - - -
149H GLU* 1.3 75.8 - - - +
151H PHE* 1.3 53.9 + - - -
153H SER* 2.6 35.2 + - - -
154H VAL 3.5 1.4 + - - -
181H SER* 3.4 13.1 - - - -
184H HIS* 3.2 34.7 - - - -
----------------------------------------------------------
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Residues in contact with PHE 151 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70H THR* 3.4 33.7 - - + -
73H ALA* 3.8 5.6 - - + -
74H TYR* 3.4 53.4 - + + -
77H ALA* 3.8 13.2 - - + -
78H ARG* 2.6 31.3 + - - +
147H ALA* 3.1 27.0 + - + -
148H LYS 3.0 3.9 + - - +
150H GLY* 1.3 73.1 - - - +
152H ALA* 1.3 59.4 + - - +
154H VAL* 3.1 7.6 + - + +
159H GLU* 5.8 0.2 - - - -
173H PHE* 3.8 10.1 - + - -
177H SER* 4.3 7.2 - - - -
178H LEU* 3.5 28.7 - - + -
181H SER* 3.5 19.6 - - - -
185H ILE* 4.4 6.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 152 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77H ALA* 3.6 17.2 - - + +
78H ARG* 4.3 7.7 + - - +
148H LYS* 2.7 24.4 + - + +
149H GLU* 3.6 12.3 - - + +
151H PHE* 1.3 73.8 - - - +
153H SER* 1.3 61.3 + - - +
154H VAL 3.5 4.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 153 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149H GLU 3.0 11.2 + - - -
150H GLY 2.6 19.8 + - - -
152H ALA* 1.3 78.7 - - - +
154H VAL* 1.3 64.1 + - - +
155H ASP* 3.5 2.6 + - - -
180H LEU 4.9 3.6 + - - -
184H HIS* 3.7 21.3 + - - -
----------------------------------------------------------
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Residues in contact with VAL 154 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78H ARG* 2.7 39.3 + - - +
150H GLY 4.2 8.5 - - - +
151H PHE* 3.1 5.3 + - + +
152H ALA 4.1 2.6 - - - +
153H SER* 1.3 80.2 - - - +
155H ASP* 1.3 70.2 + - - +
156H VAL* 3.0 3.1 + - - +
158H LEU* 4.2 5.2 - - + -
159H GLU* 3.8 12.8 - - - +
176H VAL* 4.7 4.0 - - + -
177H SER* 4.0 11.9 - - - +
180H LEU* 3.4 53.6 - - + +
181H SER* 4.3 2.5 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il