Contacts of the helix formed by residues 176 - 199 (chain H) in PDB entry 2ONK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 176 (chain H).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82F PHE* 4.0 18.2 - - + -
84F HIS* 4.2 3.4 - - + -
93F TYR* 3.9 11.7 - - + +
154H VAL* 4.7 1.1 - - + -
158H LEU* 3.9 28.7 - - + +
159H GLU* 4.2 6.7 - - + -
162H ALA* 3.5 28.0 - - + -
172H VAL* 2.6 22.3 + - + +
175H THR* 1.3 78.9 - - - +
177H SER* 1.3 70.6 + - - +
178H LEU 3.6 0.2 - - - -
179H PRO* 3.3 1.5 - - - +
180H LEU* 3.1 42.8 + - + +
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Residues in contact with SER 177 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74H TYR* 3.7 15.0 + - - -
151H PHE* 4.3 6.1 - - - -
154H VAL* 4.0 7.9 - - - +
159H GLU* 3.0 34.8 + - - +
172H VAL* 3.2 2.8 + - - +
173H PHE* 3.3 29.8 - - - -
176H VAL* 1.3 82.7 - - - +
178H LEU* 1.3 68.9 + - - +
180H LEU* 3.1 7.4 + - - +
181H SER* 3.0 16.9 + - - -
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Residues in contact with LEU 178 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70H THR* 4.4 3.6 - - + -
151H PHE* 3.5 20.0 - - + -
173H PHE* 2.7 57.5 + - + +
174H PHE* 3.9 28.5 - - + +
177H SER* 1.3 72.2 - - - +
179H PRO* 1.3 73.2 - - + +
181H SER* 2.8 18.8 + - - -
182H VAL* 3.0 16.3 + - + +
185H ILE* 4.3 14.9 - - + +
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Residues in contact with PRO 179 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84F HIS* 3.9 21.0 - - + +
174H PHE 3.1 26.0 - - - +
175H THR* 3.0 29.6 - - - +
176H VAL 3.3 8.7 - - - +
178H LEU* 1.3 89.1 - - + +
180H LEU* 1.3 59.0 + - - +
182H VAL* 3.5 23.9 - - + +
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Residues in contact with LEU 180 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F PRO* 3.5 22.2 - - + -
84F HIS* 3.4 37.5 - - + +
153H SER* 4.9 3.6 + - - -
154H VAL* 3.4 38.9 - - + +
158H LEU* 3.9 15.0 - - + -
176H VAL* 3.1 35.8 + - + +
177H SER 3.1 0.6 + - - -
178H LEU 2.8 4.8 + - - -
179H PRO* 1.3 78.1 - - - +
181H SER* 1.3 56.5 + - - +
182H VAL 3.3 1.3 + - - -
183H ARG* 4.9 3.2 + - - +
184H HIS* 5.0 2.4 - - - -
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Residues in contact with SER 181 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147H ALA 5.2 0.2 - - - -
150H GLY* 3.4 35.2 - - - -
151H PHE* 3.5 25.2 - - - -
154H VAL* 4.5 1.6 - - - -
177H SER 3.0 16.1 + - - -
178H LEU* 2.8 8.1 + - - -
180H LEU* 1.3 71.0 - - - +
182H VAL* 1.3 66.4 + - - +
183H ARG 3.3 2.5 - - - -
184H HIS* 2.7 22.4 + - - +
185H ILE* 3.0 16.1 + - - +
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Residues in contact with VAL 182 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178H LEU* 3.0 20.7 + - + +
179H PRO* 3.5 22.9 - - + +
180H LEU 3.3 2.0 - - - -
181H SER* 1.3 77.8 - - - +
183H ARG* 1.3 56.0 + - - +
184H HIS 2.7 12.0 + - - -
185H ILE* 2.9 12.9 + - + +
186H VAL* 2.8 38.6 + - + +
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Residues in contact with ARG 183 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180H LEU 4.9 2.3 + - - +
181H SER 3.3 1.4 - - - -
182H VAL* 1.3 78.7 - - - +
184H HIS* 1.3 63.7 + - + +
186H VAL* 4.5 5.8 - - + +
187H ALA* 3.6 19.7 + - - +
251H VAL* 4.3 32.3 + - + -
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Residues in contact with HIS 184 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146H GLN* 3.7 31.3 + - - +
147H ALA* 5.0 1.1 - - - -
149H GLU* 4.3 13.3 - - + +
150H GLY* 3.2 36.6 + - - -
153H SER* 3.7 22.2 + - - -
180H LEU 5.0 2.2 - - - -
181H SER* 2.7 18.7 + - - +
182H VAL 2.7 1.4 + - - -
183H ARG* 1.3 79.3 + - + +
185H ILE* 1.3 60.4 + - + +
186H VAL 3.2 1.1 - - - -
187H ALA* 3.7 0.7 - - - -
188H GLY* 2.7 32.6 + - - -
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Residues in contact with ILE 185 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66H VAL* 4.6 12.8 - - + -
70H THR* 4.5 5.8 - - + +
143H TYR* 3.0 33.0 - - + +
147H ALA* 4.9 11.9 - - + +
151H PHE* 4.4 10.5 - - + -
178H LEU* 4.3 30.5 - - + +
181H SER* 3.0 22.4 + - - +
182H VAL* 2.9 13.4 + - + +
184H HIS* 1.3 77.9 - - + +
186H VAL* 1.3 60.3 + - + +
189H ALA* 2.8 29.7 + - + +
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Residues in contact with VAL 186 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182H VAL* 2.8 31.9 + - + +
183H ARG* 4.5 6.1 - - + +
185H ILE* 1.3 79.9 - - + +
187H ALA* 1.3 65.8 + - - +
189H ALA* 3.1 6.8 + - - +
190H ILE* 2.9 33.5 + - + +
251H VAL* 4.2 31.4 - - + -
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Residues in contact with ALA 187 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146H GLN* 4.1 12.3 - - - +
183H ARG 3.6 18.4 + - - +
184H HIS 3.3 4.9 + - - +
186H VAL* 1.3 80.5 - - - +
188H GLY* 1.3 64.6 + - - +
190H ILE* 3.1 8.8 + - - +
191H MET* 2.8 35.7 + - + +
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Residues in contact with GLY 188 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143H TYR* 3.4 17.1 - - - -
146H GLN* 3.5 26.6 - - - +
184H HIS 2.7 21.0 + - - -
185H ILE 3.7 1.1 - - - -
187H ALA* 1.3 73.5 - - - +
189H ALA* 1.3 61.1 + - - +
191H MET* 3.3 4.8 + - - +
192H SER* 3.0 24.3 + - - -
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Residues in contact with ALA 189 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62H THR* 3.8 23.1 + - + -
66H VAL* 4.2 12.1 - - + -
143H TYR* 3.4 8.8 - - - -
185H ILE* 2.8 21.8 + - + +
186H VAL* 3.5 6.3 - - - +
188H GLY* 1.3 72.1 - - - +
190H ILE* 1.3 68.0 + - + +
192H SER* 2.9 16.0 + - - -
193H TRP* 2.9 13.3 + - - +
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Residues in contact with ILE 190 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186H VAL* 2.9 29.5 + - + +
187H ALA* 3.5 11.0 - - - +
189H ALA* 1.3 77.5 - - + +
191H MET* 1.3 66.8 + - + +
193H TRP* 3.2 8.9 + - - +
194H ALA* 3.0 20.8 + - + +
244H PHE* 4.0 24.1 - - + -
247H LEU* 3.7 48.0 - - + +
248H ARG* 6.0 0.9 - - + -
251H VAL* 4.9 5.6 - - + -
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Residues in contact with MET 191 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142H ILE* 3.9 18.6 - - + +
146H GLN* 3.4 37.2 - - + +
187H ALA* 2.8 25.0 + - + +
188H GLY 3.6 4.0 - - - +
190H ILE* 1.3 81.6 - - + +
192H SER* 1.3 61.0 + - - +
194H ALA* 3.3 9.1 + - - +
195H ARG* 3.1 20.1 + - - +
95I VAL* 5.3 11.7 - - + +
145I ASN* 5.6 8.7 - - - +
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Residues in contact with SER 192 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61H SER* 4.8 1.7 + - - -
62H THR* 2.7 31.8 + - - +
65H ALA* 4.9 2.2 - - - +
139H SER* 3.4 32.1 + - - -
142H ILE* 3.9 6.2 - - - +
143H TYR* 4.1 20.0 - - - +
188H GLY 3.0 11.2 + - - -
189H ALA* 2.9 8.5 + - - -
191H MET* 1.3 74.7 - - - +
193H TRP* 1.3 64.4 + - - +
195H ARG* 3.3 0.7 + - - -
196H GLY* 3.1 18.5 + - - -
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Residues in contact with TRP 193 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55H TYR* 3.3 46.8 + + + -
58H ALA* 3.7 9.8 - - + +
59H LEU* 3.7 39.4 - - + +
62H THR* 3.6 10.3 - - + +
189H ALA 2.9 11.5 + - - +
190H ILE* 3.4 10.8 - - - +
192H SER* 1.3 76.1 + - - +
194H ALA* 1.3 65.3 + - - +
195H ARG 3.1 0.2 + - - -
196H GLY* 3.2 2.1 + - - +
197H ILE* 3.0 50.1 + - + +
243H VAL* 3.3 31.9 - - + -
244H PHE* 3.1 40.8 - + - -
247H LEU* 4.9 8.1 - - + -
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Residues in contact with ALA 194 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190H ILE 3.0 9.5 + - - +
191H MET* 3.3 11.0 + - - +
193H TRP* 1.3 78.1 - - - +
195H ARG* 1.3 60.2 + - - +
197H ILE* 3.7 4.6 - - - +
198H SER* 3.0 29.5 + - - -
244H PHE* 3.6 33.7 - - + -
95I VAL* 3.5 29.0 - - + +
96I VAL* 4.7 2.7 - - + +
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Residues in contact with ARG 195 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99H HIS* 3.3 22.8 - - - -
138H VAL* 2.7 44.5 + - + +
139H SER* 3.6 22.0 - - - -
142H ILE* 4.0 21.8 - - + +
191H MET 3.1 12.0 + - - +
192H SER 3.4 8.7 - - - +
193H TRP 3.0 0.6 - - - -
194H ALA* 1.3 75.6 - - - +
196H GLY* 1.3 65.7 + - - +
198H SER* 3.1 12.6 + - - -
199H GLU* 2.7 43.5 + - - +
95I VAL* 5.2 3.1 - - + +
99I HIS* 3.9 13.0 + - - -
195I ARG* 5.0 8.1 - - - +
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Residues in contact with GLY 196 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58H ALA* 4.2 4.0 - - - -
61H SER* 5.2 0.4 - - - -
135H MET* 2.8 51.5 - - - +
139H SER* 4.4 1.0 - - - -
192H SER 3.1 11.4 + - - -
193H TRP 3.8 1.8 - - - -
195H ARG* 1.3 78.5 - - - +
197H ILE* 1.3 65.3 + - - +
199H GLU* 3.1 16.5 + - - +
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Residues in contact with ILE 197 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54H THR* 4.1 18.4 - - + +
55H TYR* 3.2 42.8 - - + +
58H ALA* 3.8 7.1 - - + +
135H MET* 4.2 0.6 - - - +
193H TRP* 3.0 56.4 + - + +
194H ALA* 3.7 8.1 - - - +
196H GLY* 1.3 77.5 - - - +
198H SER* 1.3 66.9 + - - +
199H GLU 3.5 0.5 + - - +
213H ALA* 5.7 0.3 - - - +
214H PRO* 3.6 18.2 - - - +
240H SER* 4.7 3.8 - - - +
244H PHE* 4.4 6.7 - - + -
96I VAL 4.1 13.2 - - - +
98I PRO* 3.8 9.5 - - + +
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Residues in contact with SER 198 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194H ALA 3.0 16.4 + - - -
195H ARG* 3.1 9.6 + - - -
197H ILE* 1.3 76.1 - - - +
199H GLU* 1.3 60.8 + - - +
200H PHE* 4.6 0.2 - - - +
214H PRO* 4.6 0.5 - - - +
94I PRO 5.5 0.9 - - - -
95I VAL 3.6 11.5 + - - -
96I VAL 3.6 5.5 + - - -
97I ILE 3.5 8.0 + - - -
98I PRO* 3.4 29.6 - - - +
99I HIS* 2.9 43.4 + - - -
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Residues in contact with GLU 199 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99H HIS* 3.5 12.2 + - - +
135H MET* 4.8 2.9 - - + +
138H VAL* 4.2 9.8 - - + +
195H ARG* 2.7 46.3 + - - +
196H GLY* 3.1 18.4 + - - +
197H ILE 4.1 0.9 - - - +
198H SER* 1.3 77.3 - - - +
200H PHE* 1.3 63.2 + - - +
201H GLY 3.6 1.0 - - - -
202H ALA* 2.6 40.5 + - + +
203H VAL* 3.5 30.1 - - + +
212H ILE* 4.9 3.3 - - - +
214H PRO* 3.2 21.1 - - - +
99I HIS* 3.0 9.4 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il