Contacts of the helix formed by residues 149 - 171 (chain E) in PDB entry 2Q9Q
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 149 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87E MET* 4.8 3.5 - - - +
89E SER 4.1 0.9 + - - -
90E PRO* 3.0 32.1 + - - +
92E TYR* 4.0 18.9 - - + -
93E MET* 5.7 0.9 - - + -
94E GLU* 5.0 5.2 - - - +
121E TRP* 5.6 0.2 - - + -
124E ARG* 4.7 1.3 - - - -
147E ASN 3.4 2.5 + - - -
148E LEU* 1.3 74.3 - - - +
150E LEU* 1.3 60.4 + - - +
151E MET* 3.2 21.1 - - + +
152E GLU* 2.8 36.5 + - + +
153E ILE* 2.9 30.7 + - - +
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Residues in contact with LEU 150 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1E MET* 4.5 7.2 - - + -
6E VAL* 3.8 28.0 - - + -
9E LEU* 4.0 26.7 - - + -
90E PRO 4.3 3.7 + - - +
91E TYR* 4.2 18.4 - - + +
148E LEU 4.0 0.4 + - - -
149E THR* 1.3 74.6 + - - +
151E MET* 1.3 58.2 + - - +
153E ILE* 4.3 14.6 - - + +
154E ASN* 2.8 37.9 + - + +
35F MET* 4.3 19.5 - - + -
39F PHE* 5.7 3.4 - - + -
203F GLN* 5.8 0.4 + - - -
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Residues in contact with MET 151 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3E ALA* 3.7 37.5 - - - +
6E VAL* 3.7 20.0 - - + +
7E GLU 4.4 0.2 - - - +
93E MET* 4.8 5.2 - - + -
94E GLU* 3.4 42.1 + - + +
121E TRP* 3.9 20.1 - - + -
149E THR* 3.2 10.6 - - + +
150E LEU* 1.3 79.1 - - - +
152E GLU* 1.3 56.6 + - - +
154E ASN* 4.0 3.0 - - - +
155E THR* 2.7 40.1 + - - -
186H PHE* 4.1 20.4 - - + -
189H TRP* 4.1 19.5 - - + -
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Residues in contact with GLU 152 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92E TYR* 2.8 26.3 + - + -
121E TRP* 3.5 29.1 - - + -
124E ARG* 2.9 38.8 + - - +
125E ILE* 4.4 11.2 - - + +
128E LEU* 4.0 14.7 - - + +
148E LEU* 3.4 16.1 - - + +
149E THR* 2.8 43.3 + - + +
150E LEU 3.2 0.2 - - - -
151E MET* 1.3 76.1 - - - +
153E ILE* 1.3 64.1 + - - +
155E THR* 3.7 1.4 + - - -
156E SER* 3.6 15.2 + - - -
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Residues in contact with ILE 153 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128E LEU* 5.6 1.1 - - - -
145E LEU* 4.0 10.8 - - + -
148E LEU* 3.6 40.6 - - + +
149E THR 2.9 23.2 + - - +
150E LEU* 3.7 15.3 - - + +
152E GLU* 1.3 78.3 - - - +
154E ASN* 1.3 54.9 + - + +
157E GLY* 2.7 35.4 + - - +
172F PHE* 3.8 38.4 - - + -
203F GLN* 3.7 18.8 - - + +
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Residues in contact with ASN 154 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1E MET* 2.9 52.7 + - - +
2E ASP* 4.1 9.2 - - - -
3E ALA* 4.6 1.2 + - - -
6E VAL* 4.2 11.2 - - + +
150E LEU* 2.8 23.2 + - + +
151E MET* 4.2 3.3 - - - +
153E ILE* 1.3 79.8 - - + +
155E THR* 1.3 63.0 + - - +
156E SER 3.5 0.2 - - - -
157E GLY* 4.0 3.6 + - - +
158E THR* 4.7 12.9 + - - -
39F PHE* 4.2 15.2 - - - -
182H GLY* 5.4 2.1 - - - -
185H ASP* 5.2 0.9 - - - +
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Residues in contact with THR 155 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121E TRP* 3.8 18.6 - - + -
125E ILE* 6.1 2.5 - - + -
151E MET* 2.7 26.3 + - - -
152E GLU 4.2 3.1 - - - -
153E ILE 3.4 0.4 - - - -
154E ASN* 1.3 79.0 - - - +
156E SER* 1.3 65.0 + - - +
158E THR* 5.3 0.6 + - - -
159E PHE* 5.8 0.3 - - - +
154H GLN* 4.9 2.4 - - - +
179H GLY* 4.9 3.5 - - - +
182H GLY* 3.5 41.8 - - - +
183H LEU* 4.1 16.6 + - + -
186H PHE* 3.8 24.0 - - + +
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Residues in contact with SER 156 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125E ILE* 4.3 11.1 - - - +
128E LEU* 3.7 29.7 - - - +
152E GLU 3.6 4.7 + - - -
155E THR* 1.3 82.4 - - - +
157E GLY* 1.3 66.6 + - - +
158E THR 3.4 1.6 - - - -
159E PHE* 3.1 19.3 + - - +
160E LEU* 3.2 15.8 + - - +
150H MET* 4.5 8.7 - - - +
154H GLN* 3.2 30.2 + - - -
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Residues in contact with GLY 157 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128E LEU* 5.8 0.2 - - - +
153E ILE* 2.7 24.2 + - - +
154E ASN* 4.0 2.0 - - - -
155E THR 3.6 1.0 - - - -
156E SER* 1.3 78.0 - - - +
158E THR* 1.3 62.9 + - - +
160E LEU* 3.1 5.0 + - - +
161E THR* 2.9 27.2 + - - +
172F PHE* 3.7 21.8 - - - -
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Residues in contact with THR 158 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154E ASN* 4.7 12.8 + - - -
155E THR 5.3 0.4 - - - -
156E SER 3.4 1.0 - - - -
157E GLY* 1.3 74.2 - - - +
159E PHE* 1.3 64.6 + - - +
161E THR* 3.1 9.2 + - - +
162E GLN* 2.9 38.1 + - + +
178H THR* 3.6 20.2 - - + -
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Residues in contact with PHE 159 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155E THR 5.7 0.4 + - - +
156E SER* 3.1 14.4 + - - +
158E THR* 1.3 77.8 - - - +
160E LEU* 1.3 60.4 + - - +
162E GLN* 3.6 1.9 - - - +
163E ALA* 2.9 29.1 + - - +
146H PHE* 3.6 22.9 - + - -
149H ILE* 3.8 9.0 - - + -
150H MET* 3.4 54.7 - - + -
153H SER* 3.9 11.4 - - - -
154H GLN* 4.9 3.1 - - - +
175H LEU* 3.3 57.5 - - + +
176H PHE 4.3 0.2 - - - -
178H THR* 3.8 9.1 - - - +
179H GLY* 3.5 23.6 - - - -
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Residues in contact with LEU 160 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128E LEU* 4.2 22.2 - - + -
132E ALA* 3.4 35.9 - - + +
135E PHE* 5.6 2.9 - - + -
136E VAL* 5.4 2.0 - - + -
156E SER* 3.2 12.9 + - - +
157E GLY* 3.1 9.3 + - - +
159E PHE* 1.3 80.6 - - - +
161E THR* 1.3 62.6 + - + +
163E ALA* 3.4 3.5 + - - +
164E LEU* 3.1 41.1 + - + +
172F PHE* 4.5 19.7 - - + -
205F LEU* 5.2 7.2 - - + -
146H PHE* 4.2 14.6 - - + -
150H MET* 4.1 12.1 - - + -
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Residues in contact with THR 161 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157E GLY 2.9 17.9 + - - +
158E THR* 3.1 16.8 + - - +
160E LEU* 1.3 71.7 - - - +
162E GLN* 1.3 60.3 + - - +
164E LEU* 3.5 3.6 + - - +
165E ASN* 2.9 39.3 + - - +
170F TYR* 3.2 42.0 - - + +
171F VAL* 4.3 0.9 - - - -
172F PHE* 3.7 24.7 - - + -
205F LEU* 4.1 6.1 - - + -
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Residues in contact with GLN 162 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158E THR* 2.9 26.3 + - + +
159E PHE 3.6 3.8 - - - +
161E THR* 1.3 76.7 + - - +
163E ALA* 1.3 63.1 + - - +
165E ASN* 3.3 11.6 + - + +
166E HIS* 3.1 48.5 + - + +
174H GLY 3.8 12.1 + - - -
175H LEU* 3.8 14.1 - - + +
178H THR* 2.7 37.5 + - - +
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Residues in contact with ALA 163 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136E VAL* 5.5 0.2 - - + -
159E PHE 2.9 17.4 + - - +
160E LEU 3.8 3.4 - - - +
162E GLN* 1.3 75.1 - - - +
164E LEU* 1.3 60.0 + - + +
166E HIS* 3.3 2.7 + - - -
167E MET* 2.9 43.7 + - + +
142H PHE* 3.6 10.6 - - + -
146H PHE* 3.7 29.4 - - + -
175H LEU* 4.0 17.9 - - + +
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Residues in contact with LEU 164 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135E PHE* 3.2 43.5 - - + -
136E VAL* 4.4 8.3 - - + -
140E GLU 4.9 4.5 - - - +
160E LEU* 3.1 27.1 + - + +
161E THR* 3.8 2.7 - - - +
163E ALA* 1.3 74.4 - - + +
165E ASN* 1.3 59.6 + - - +
167E MET* 3.2 19.9 + - + +
168E TYR* 2.8 30.8 + - - +
170F TYR* 3.7 33.7 - - + -
205F LEU* 3.7 23.1 - - + -
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Residues in contact with ASN 165 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161E THR* 2.9 32.5 + - - +
162E GLN* 3.6 9.9 - - + +
163E ALA 3.3 0.2 - - - -
164E LEU* 1.3 75.5 - - - +
166E HIS* 1.3 67.7 + - + +
168E TYR* 3.3 7.6 + - - +
169E LYS* 3.1 29.7 + - - +
166F ASP* 5.1 8.0 + - - +
168F ASP 3.7 2.2 - - - +
169F SER* 3.1 19.6 + - - +
170F TYR* 2.7 36.6 + - - +
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Residues in contact with HIS 166 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162E GLN* 3.1 41.3 + - + +
163E ALA* 3.6 6.0 - - - +
164E LEU 3.3 0.2 - - - -
165E ASN* 1.3 81.1 - - + +
167E MET* 1.3 63.2 + - - +
169E LYS* 3.2 7.3 + - + +
170E LEU* 3.0 28.1 + - + +
13H LEU* 3.6 26.5 - - + +
142H PHE* 4.0 11.7 - - + -
171H MET* 3.4 39.4 - - + +
175H LEU* 4.5 4.2 - - + +
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Residues in contact with MET 167 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136E VAL* 3.5 50.7 - - + +
139E GLN* 6.3 1.6 - - - -
163E ALA* 2.9 35.5 + - + +
164E LEU* 3.2 16.8 + - + +
166E HIS* 1.3 77.7 - - - +
168E TYR* 1.3 50.9 + - - +
170E LEU* 3.2 3.1 + - - -
171E ARG* 2.7 40.1 + - - +
139H LEU* 3.7 20.0 - - + +
142H PHE* 3.6 29.8 - - + -
143H ILE* 4.6 7.2 - - + -
146H PHE* 3.9 7.6 - - + -
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Residues in contact with TYR 168 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164E LEU 2.8 19.9 + - - +
165E ASN* 3.6 6.5 - - - +
166E HIS 3.3 0.2 - - - -
167E MET* 1.3 73.7 - - - +
169E LYS* 1.3 70.1 + - + +
171E ARG* 3.3 6.3 + - + +
172E THR* 2.8 52.9 + - + +
168F ASP* 3.5 38.5 + - + +
170F TYR* 4.3 17.7 - + + +
185F GLU* 4.1 8.5 + - - +
186F PRO 3.6 25.1 - - - -
187F ASP* 4.4 7.0 + - - -
188F THR* 5.8 1.0 - - - +
207F ARG* 3.8 34.7 + - - -
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Residues in contact with LYS 169 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165E ASN* 3.1 19.7 + - - +
166E HIS* 3.4 11.9 - - + +
168E TYR* 1.3 83.0 - - + +
170E LEU* 1.3 57.3 + - - +
172E THR* 3.0 8.5 + - - +
173E ASN* 2.9 30.7 + - - +
166F ASP* 3.1 35.8 + - - -
168F ASP* 4.7 11.1 + - - +
11H GLY* 5.7 3.4 - - - -
13H LEU* 3.5 27.0 - - + +
14H GLY* 4.0 20.3 - - - +
15H PRO* 5.1 4.7 - - + -
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Residues in contact with LEU 170 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166E HIS 3.0 20.0 + - - +
167E MET 3.8 3.6 - - - +
169E LYS* 1.3 77.1 - - - +
171E ARG* 1.3 59.9 + - - +
172E THR 3.1 0.2 - - - -
173E ASN* 3.0 36.8 + - - +
13H LEU* 3.7 34.1 - - + +
117H TYR* 3.8 34.1 - - + +
121H SER* 4.6 1.3 - - - -
135H SER* 3.8 10.4 + - - +
138H LEU* 3.9 26.5 - - + +
139H LEU* 4.1 19.4 - - + +
142H PHE* 4.4 14.6 - - + -
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Residues in contact with ARG 171 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139E GLN* 3.5 46.2 + - - +
167E MET* 2.7 25.5 + - - +
168E TYR* 3.7 9.0 - - - +
169E LYS 3.1 0.4 - - - -
170E LEU* 1.3 73.0 - - - +
172E THR* 1.3 63.2 + - + +
173E ASN 3.8 0.2 - - - -
174E LEU* 6.4 0.2 - - - -
186F PRO* 3.8 29.9 + - - +
187F ASP* 2.8 39.6 + - + +
188F THR* 5.1 2.1 + - - -
192F ARG* 5.2 9.9 - - - +
139H LEU* 4.1 17.9 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il