Contacts of the helix formed by residues 58 - 94 (chain G) in PDB entry 2Q9Q
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 58 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46G ASP* 3.8 31.0 - - + +
49G GLU* 3.3 34.5 - - + +
50G ALA* 4.1 15.5 - - + -
56G SER 3.0 1.8 - - - -
57G ASP* 1.3 91.9 - - - +
59G ILE* 1.3 58.8 + - - +
60G PRO 3.5 1.1 - - - -
61G THR* 3.5 6.3 + - - +
62G ILE* 2.8 40.1 + - + +
41H PRO* 3.6 25.1 - - + -
42H ARG* 3.5 28.7 - - - +
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Residues in contact with ILE 59 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50G ALA* 5.5 3.6 - - + -
51G LYS* 5.4 15.0 - - + +
56G SER* 3.3 36.1 - - - +
57G ASP 3.4 0.2 - - - -
58G LEU* 1.3 75.1 - - - +
60G PRO* 1.3 70.4 - - + +
62G ILE* 3.0 15.5 + - + +
63G LYS* 2.7 53.1 + - + +
83H ILE* 5.9 0.2 - - + -
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Residues in contact with PRO 60 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56G SER 4.4 1.6 - - - +
57G ASP* 3.8 13.0 - - - +
58G LEU 3.7 2.5 - - - -
59G ILE* 1.3 95.4 - - + +
61G THR* 1.3 54.7 + - - +
63G LYS* 3.6 2.1 - - - +
64G PHE* 2.9 28.8 + - - +
38H THR* 4.4 15.5 - - + -
39H ALA 3.9 20.4 - - - +
40H MET* 3.4 25.7 - - + +
76H LEU* 4.4 0.5 - - - +
83H ILE* 4.2 28.9 - - + -
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Residues in contact with THR 61 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46G ASP* 4.3 3.1 - - - +
58G LEU* 3.5 11.9 + - - -
59G ILE 3.1 0.6 - - - -
60G PRO* 1.3 75.6 - - - +
62G ILE* 1.3 64.6 + - - +
64G PHE* 3.3 1.7 + - - +
65G ARG* 3.1 55.8 + - - +
40H MET* 3.7 4.4 - - - -
41H PRO* 3.1 35.4 - - + +
42H ARG* 4.6 8.5 - - + +
43H LEU* 3.6 27.8 - - + +
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Residues in contact with ILE 62 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43G ASN* 3.1 36.9 + - - +
46G ASP* 4.0 32.1 - - + +
47G VAL* 3.9 26.2 - - + -
50G ALA* 4.2 8.7 - - + -
51G LYS* 5.6 8.3 - - + -
58G LEU* 2.8 33.2 + - + +
59G ILE* 3.0 13.2 + - + +
61G THR* 1.3 75.6 - - - +
63G LYS* 1.3 60.5 + - + +
65G ARG* 3.5 1.2 + - - +
66G HIS* 3.0 27.0 + - + +
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Residues in contact with LYS 63 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59G ILE* 2.7 37.6 + - + +
60G PRO* 3.6 6.7 - - + +
62G ILE* 1.3 75.8 - - + +
64G PHE* 1.3 64.2 + - - +
66G HIS* 3.2 10.8 + - + +
67G CYS* 3.0 30.8 + - - -
75H GLY 4.6 9.2 - - - +
76H LEU* 4.0 18.8 + - + +
83H ILE* 3.6 21.3 - - + +
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Residues in contact with PHE 64 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1G MET* 3.5 20.9 - - + -
2G PHE* 3.9 27.4 - + - -
60G PRO 2.9 18.3 + - - +
61G THR 3.4 5.6 - - - +
62G ILE 3.3 0.2 - - - -
63G LYS* 1.3 77.1 - - - +
65G ARG* 1.3 65.9 + - - +
67G CYS* 3.2 4.9 + - - +
68G SER* 3.1 31.5 + - - -
40H MET* 4.1 9.9 - - + -
43H LEU* 3.5 34.1 - - + -
46H PHE 5.8 0.9 - - - -
47H PHE 5.1 0.9 - - - -
68H LEU* 5.3 5.2 - - + -
71H TRP* 6.2 0.4 - + - -
72H LEU* 3.2 41.6 - - + +
76H LEU* 3.8 21.0 - - + +
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Residues in contact with ARG 65 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2G PHE* 4.4 9.6 - - + -
39G LEU* 3.6 28.8 - - + +
42G GLN* 3.3 46.4 + - - +
43G ASN* 2.6 38.4 + - - +
46G ASP* 2.5 41.4 + - - +
61G THR* 3.1 34.1 + - - +
62G ILE 4.6 0.4 - - - +
64G PHE* 1.3 81.2 - - + +
66G HIS* 1.3 60.6 + - - +
68G SER* 3.2 9.5 + - - -
69G LEU* 2.9 33.5 + - - +
42H ARG* 4.5 10.5 + - - +
43H LEU* 4.7 7.3 - - + +
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Residues in contact with HIS 66 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152F ASN* 5.0 13.9 + - - -
153F LEU* 5.0 6.1 - - + -
43G ASN* 4.0 6.5 + - - +
62G ILE* 3.0 20.0 + - + +
63G LYS* 3.2 11.6 + - + +
65G ARG* 1.3 75.1 - - - +
67G CYS* 1.3 70.4 + - - +
69G LEU* 3.2 18.1 + - + +
70G LEU* 3.1 52.4 + - + +
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Residues in contact with CYS 67 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63G LYS* 3.0 23.6 + - - -
64G PHE 3.5 7.0 - - - +
66G HIS* 1.3 79.9 - - - +
68G SER* 1.3 58.8 + - - +
70G LEU* 3.2 12.5 + - - +
71G ARG* 2.9 29.1 + - - +
71H TRP* 3.7 9.8 - - + +
72H LEU* 4.1 14.8 - - + -
75H GLY* 3.7 39.9 - - - -
76H LEU* 4.3 5.4 - - - -
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Residues in contact with SER 68 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2G PHE* 3.8 20.1 - - - +
3G CYS* 3.2 18.5 - - - -
39G LEU* 3.9 15.5 - - - -
64G PHE* 3.1 20.8 + - - -
65G ARG* 3.5 11.2 - - - -
67G CYS* 1.3 78.0 - - - +
69G LEU* 1.3 56.9 + - - +
72G ASN* 3.0 34.6 + - - -
71H TRP* 3.8 14.3 - - - -
72H LEU* 4.8 0.5 - - - +
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Residues in contact with LEU 69 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150F PRO* 4.4 8.3 - - + -
152F ASN* 5.5 1.3 - - - +
153F LEU* 4.8 20.2 - - + -
36G MET* 3.2 52.3 - - + +
39G LEU* 3.6 13.9 - - + +
40G TYR* 4.2 24.0 - - + +
43G ASN* 4.9 6.5 - - - +
65G ARG 2.9 19.1 + - - +
66G HIS* 3.4 21.5 - - - +
67G CYS 3.1 0.2 - - - -
68G SER* 1.3 75.2 - - - +
70G LEU* 1.3 67.3 + - + +
71G ARG 3.1 0.2 - - - -
72G ASN* 3.2 5.8 + - - +
73G ARG* 3.0 23.9 + - - +
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Residues in contact with LEU 70 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153F LEU* 4.0 25.8 - - + -
66G HIS* 3.1 41.2 + - + +
67G CYS* 3.2 12.1 + - - +
69G LEU* 1.3 75.3 - - - +
71G ARG* 1.3 57.6 + - - +
73G ARG* 3.4 21.8 + - - +
74G ARG* 2.9 28.9 + - - +
19H PHE* 5.3 1.0 - - - -
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Residues in contact with ARG 71 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3G CYS* 3.6 20.5 - - + +
7G MET* 3.5 16.0 - - - +
67G CYS 2.9 16.0 + - - +
68G SER 3.6 5.2 - - - +
69G LEU 3.1 0.2 - - - -
70G LEU* 1.3 76.2 - - - +
72G ASN* 1.3 65.7 + - - +
74G ARG* 3.3 27.6 + - - +
75G CYS* 3.0 33.5 + - - -
25H ILE* 2.9 40.6 + - - +
28H SER* 3.4 21.8 - - - -
29H HIS* 4.0 6.5 - - - +
71H TRP* 3.4 53.7 - - + +
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Residues in contact with ASN 72 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3G CYS* 3.7 13.3 - - - -
6G ALA* 3.4 24.6 - - - +
32G VAL* 3.7 14.1 - - + +
35G GLU* 3.5 29.1 + - - +
36G MET* 3.5 26.1 - - + +
39G LEU* 3.7 14.6 - - - +
68G SER 3.0 24.7 + - - +
69G LEU 3.2 1.3 + - - +
71G ARG* 1.3 76.5 - - - +
73G ARG* 1.3 58.6 + - - +
75G CYS* 3.9 1.4 - - - +
76G THR* 2.9 34.6 + - - -
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Residues in contact with ARG 73 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149F MET* 3.6 20.4 - - + -
152F ASN 4.1 3.6 + - - -
153F LEU* 3.4 48.9 + - + +
155F LYS 3.2 25.9 + - - +
156F VAL* 4.3 16.2 - - + +
36G MET* 4.0 13.8 - - + +
69G LEU 3.0 16.0 + - - +
70G LEU* 3.6 18.3 - - - +
72G ASN* 1.3 77.4 - - - +
74G ARG* 1.3 63.1 + - - +
76G THR* 3.2 5.3 + - - -
77G VAL* 3.0 33.9 + - + +
19H PHE* 4.7 14.9 - - - -
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Residues in contact with ARG 74 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70G LEU 2.9 18.2 + - - +
71G ARG* 3.3 32.9 + - - +
73G ARG* 1.3 76.5 - - - +
75G CYS* 1.3 57.5 + - - +
77G VAL* 3.5 1.0 + - - +
78G ALA* 2.9 31.9 + - - +
17H GLU* 2.7 38.6 + - - +
18H ASN 2.9 26.7 + - - -
19H PHE* 2.9 58.5 + - + +
24H ASP* 3.7 5.1 - - - +
25H ILE* 3.3 24.2 - - + +
28H SER* 3.7 1.6 + - - -
71H TRP* 5.6 1.6 - - - +
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Residues in contact with CYS 75 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3G CYS 5.7 0.2 - - - -
6G ALA* 3.7 36.1 - - + +
7G MET* 4.5 5.2 - - - -
9G LEU* 5.1 2.4 - - + +
10G ILE* 3.5 15.5 - - + +
71G ARG* 3.0 37.7 + - - +
72G ASN 3.9 0.7 - - - +
74G ARG* 1.3 76.8 - - - +
76G THR* 1.3 56.4 + - - +
79G TYR* 2.9 31.9 + - - +
25H ILE* 3.7 29.6 - - - -
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Residues in contact with THR 76 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145F ALA* 3.9 10.8 - - + -
149F MET* 4.0 14.0 - - + +
9G LEU* 4.8 7.9 - - - +
29G LEU* 3.8 21.5 - - + +
32G VAL* 3.6 20.6 - - - +
33G LEU* 5.4 2.4 - - + +
36G MET* 5.0 1.2 - - - -
72G ASN 2.9 21.3 + - - -
73G ARG 3.6 4.5 - - - -
75G CYS* 1.3 77.6 - - - +
77G VAL* 1.3 58.5 + - - +
79G TYR* 3.3 5.5 + - - +
80G LEU* 2.9 54.7 + - + +
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Residues in contact with VAL 77 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141F LEU* 4.6 22.8 - - + +
146F LEU* 4.2 15.9 - - + -
149F MET* 4.7 3.1 - - + -
156F VAL* 4.1 31.9 - - + -
158F LEU* 5.8 1.6 - - + -
161F ALA* 5.8 0.4 - - + -
73G ARG* 3.0 22.0 + - + +
74G ARG 4.1 2.5 - - - +
76G THR* 1.3 74.9 - - + +
78G ALA* 1.3 57.7 + - - +
80G LEU* 3.3 9.2 + - + +
81G TYR* 2.8 31.7 + - + +
19H PHE* 4.5 12.8 - - + -
20H LEU* 3.8 17.0 - - + -
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Residues in contact with ALA 78 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10G ILE* 4.3 3.4 - - + -
74G ARG 2.9 19.2 + - - +
75G CYS 3.8 2.5 - - - +
77G VAL* 1.3 78.8 - - - +
79G TYR* 1.3 62.0 + - - +
81G TYR* 4.0 1.4 - - - +
82G ASP* 3.0 27.2 + - - +
19H PHE 4.3 0.2 - - - +
20H LEU* 4.0 31.9 - - + +
22H LEU* 4.4 6.8 - - + +
25H ILE* 3.4 26.7 - - + -
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Residues in contact with TYR 79 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9G LEU* 3.6 51.8 - - + -
10G ILE* 4.1 10.7 - - + +
12G GLU* 4.1 8.4 + - - -
13G LEU* 3.4 42.4 - - + +
23G ALA 4.2 0.2 + - - -
24G PHE* 3.8 10.5 - + - -
25G ASN* 2.8 33.8 + - + +
29G LEU* 5.6 4.3 - - + -
75G CYS 2.9 19.2 + - - +
76G THR* 3.6 2.9 - - - +
78G ALA* 1.3 77.8 - - - +
80G LEU* 1.3 82.3 - - + +
83G ARG* 3.2 47.3 + - - +
22H LEU* 4.9 0.4 - - - -
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Residues in contact with LEU 80 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140F TYR* 4.2 10.5 + - + +
141F LEU* 3.9 25.1 - - + +
144F VAL* 4.0 23.6 - - + -
145F ALA* 3.6 20.6 - - + +
146F LEU* 6.2 0.4 - - + -
24G PHE* 4.1 17.9 - - + -
29G LEU* 4.7 5.8 - - + -
76G THR* 2.9 41.7 + - + +
77G VAL* 3.7 6.3 - - + +
79G TYR* 1.3 92.8 - - + +
81G TYR* 1.3 61.1 + - - +
83G ARG* 3.5 7.1 + - - +
84G LEU* 3.3 26.1 + - - +
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Residues in contact with TYR 81 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101F GLU 4.4 5.0 + - - -
102F LYS* 4.5 2.9 + - - -
104F PHE* 3.3 33.9 - + - -
133F PHE* 5.0 3.9 - + - -
137F THR* 4.3 23.1 - - + -
141F LEU* 4.8 8.7 - - + +
158F LEU* 5.9 2.9 - - + -
162F VAL* 4.2 12.7 - - + +
77G VAL* 2.8 24.4 + - + +
78G ALA 4.0 2.9 - - - +
80G LEU* 1.3 70.5 - - - +
82G ASP* 1.3 67.4 + - - +
84G LEU* 3.2 13.6 + - + +
85G LEU* 3.1 54.6 + - + +
8H VAL* 4.0 14.4 - - + -
20H LEU* 3.7 36.1 - - + -
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Residues in contact with ASP 82 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13G LEU* 3.5 16.0 - - + +
78G ALA 3.0 18.3 + - - +
80G LEU 3.4 0.2 - - - -
81G TYR* 1.3 77.1 - - - +
83G ARG* 1.3 62.3 + - - +
85G LEU* 3.1 23.3 + - - +
86G ARG* 2.6 48.0 + - - +
5H TYR* 2.5 25.5 + - - -
7H ARG* 4.1 8.3 + - - +
8H VAL* 5.1 1.7 + - - -
20H LEU 5.9 1.3 - - - +
22H LEU* 3.8 22.4 - - + +
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Residues in contact with ARG 83 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13G LEU* 3.8 16.5 - - + +
21G LEU* 3.6 23.8 - - + +
22G PRO* 2.8 35.5 + - - +
23G ALA 4.0 0.6 + - - -
24G PHE* 3.5 19.2 - - - +
79G TYR* 3.2 49.3 + - - +
80G LEU* 3.8 5.8 - - - +
81G TYR 3.2 0.6 - - - -
82G ASP* 1.3 75.5 - - - +
84G LEU* 1.3 65.4 + - - +
86G ARG* 3.2 9.5 + - - +
87G ILE* 2.9 29.6 + - - +
105G HIS 3.0 26.9 + - - -
110G GLU* 3.0 34.3 + - - +
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Residues in contact with LEU 84 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137F THR* 4.1 20.4 - - + +
140F TYR* 3.8 39.0 - - + +
141F LEU* 4.9 2.0 - - + -
80G LEU 3.3 12.1 + - - +
81G TYR* 3.2 18.8 + - + +
83G ARG* 1.3 78.9 - - - +
85G LEU* 1.3 58.4 + - + +
87G ILE* 3.2 16.2 + - + +
88G ARG* 2.8 30.6 + - - +
110G GLU* 4.8 1.1 - - + +
113G TRP* 3.6 59.6 - - + +
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Residues in contact with LEU 85 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101F GLU 6.1 1.3 - - - +
102F LYS* 6.4 1.6 - - - -
133F PHE* 5.8 8.5 - - + -
81G TYR* 3.1 49.4 + - + +
82G ASP* 3.1 15.3 + - - +
84G LEU* 1.3 79.7 - - + +
86G ARG* 1.3 60.6 + - - +
88G ARG* 3.3 10.5 + - + +
89G ALA* 3.2 20.4 + - - +
4H ALA 4.3 1.2 - - - +
5H TYR* 3.8 17.4 - - + -
6H PHE* 3.2 43.2 + - + +
7H ARG* 3.8 9.9 - - - -
8H VAL* 4.1 6.7 - - + +
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Residues in contact with ARG 86 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13G LEU* 2.9 36.6 + - - +
14G HIS* 5.0 0.2 - - - +
16G ALA* 3.1 23.2 + - - +
18G GLU 3.6 12.9 + - - -
19G GLY* 3.5 18.3 - - - +
20G GLN 3.0 27.8 + - - -
21G LEU* 4.3 17.7 - - + -
82G ASP* 2.6 32.7 + - - +
83G ARG* 3.6 7.6 - - - +
85G LEU* 1.3 76.5 - - - +
87G ILE* 1.3 64.0 + - - +
89G ALA* 3.2 15.5 + - - +
90G LEU* 3.2 18.4 + - - +
5H TYR* 3.1 39.9 + - + -
7H ARG* 5.5 1.0 - - - +
22H LEU* 4.4 3.6 - - - +
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Residues in contact with ILE 87 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21G LEU* 3.8 24.9 - - + -
83G ARG 2.9 23.7 + - - +
84G LEU* 3.5 11.0 - - + +
86G ARG* 1.3 75.4 - - - +
88G ARG* 1.3 65.5 + - - +
90G LEU* 3.1 24.3 + - + +
106G MET* 3.9 16.2 - - + -
110G GLU* 3.5 46.7 - - + +
113G TRP* 4.2 9.6 - - + -
114G PHE* 3.5 35.2 - - + -
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Residues in contact with ARG 88 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94F ARG 5.7 1.2 + - - -
97F LEU* 5.3 1.0 - - - +
98F MET* 4.8 6.1 - - - +
101F GLU* 2.9 37.5 + - - +
133F PHE* 5.0 1.1 - - + -
84G LEU 2.8 16.7 + - - +
85G LEU* 3.5 11.4 - - + +
87G ILE* 1.3 76.4 - - - +
89G ALA* 1.3 63.3 + - - +
91G ARG* 3.2 14.4 + - - +
92G TRP* 3.2 41.1 - - - +
113G TRP* 3.8 18.4 - - + -
114G PHE* 5.3 0.2 - - - -
117G TYR* 3.1 25.3 + - + -
4H ALA* 2.9 45.7 + - - +
6H PHE* 3.4 27.7 - - - -
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Residues in contact with ALA 89 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19G GLY* 6.0 1.6 - - - -
85G LEU 3.2 7.3 + - - +
86G ARG 3.4 10.1 - - - +
87G ILE 3.2 0.6 - - - -
88G ARG* 1.3 81.3 - - - +
90G LEU* 1.3 62.8 + - + +
92G TRP* 3.0 13.5 + - - +
93G GLU* 3.1 23.6 + - - +
2H SER* 4.8 4.0 - - - -
4H ALA* 3.5 38.8 - - + +
5H TYR* 3.7 12.3 - - + +
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Residues in contact with LEU 90 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A GLN* 5.5 1.8 - - - +
19G GLY 5.1 8.7 - - - +
21G LEU* 4.3 22.2 - - + -
86G ARG 3.2 16.4 + - - +
87G ILE* 3.1 22.5 + - + +
89G ALA* 1.3 77.2 - - + +
91G ARG* 1.3 54.3 + - - +
93G GLU* 4.4 2.0 - - + +
94G TYR* 2.8 60.9 + - + +
95G GLY 3.3 4.2 + - - +
98G LEU* 3.9 34.5 - - + -
102G LEU* 4.5 17.3 - - + -
106G MET* 4.4 5.4 - - - -
114G PHE* 4.4 1.1 - - + -
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Residues in contact with ARG 91 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87G ILE 3.7 1.4 + - - -
88G ARG 3.2 12.8 + - - +
89G ALA 3.1 0.8 - - - -
90G LEU* 1.3 78.4 - - - +
92G TRP* 1.3 60.0 + - + +
95G GLY* 3.2 40.6 + - - -
96G SER* 3.9 20.6 + - - +
114G PHE* 3.7 14.9 - - + -
117G TYR* 4.1 15.0 - - + -
118G LYS* 4.2 19.7 + - - +
121G LEU* 3.9 23.2 - - + +
125G MET* 4.1 18.0 - - - +
135G ASP* 5.2 1.8 + - - -
137G THR* 3.6 35.9 + - - +
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Residues in contact with TRP 92 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94F ARG* 3.6 35.9 - - + -
97F LEU* 4.6 8.7 - - + -
101F GLU* 5.1 0.2 - - - -
88G ARG* 3.2 49.4 - - - +
89G ALA 3.0 5.8 + - - +
91G ARG* 1.3 82.8 - - + +
93G GLU* 1.3 67.1 + - - +
95G GLY 4.7 0.4 - - - -
117G TYR* 3.0 25.3 + - - -
121G LEU* 3.9 27.3 - - + +
136G ILE* 3.6 24.2 - - + -
137G THR* 3.9 27.5 - - + +
140G MET* 4.4 25.7 - - + +
4H ALA* 4.0 12.6 - - + -
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Residues in contact with GLU 93 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89G ALA* 3.1 21.4 + - - +
90G LEU* 4.6 0.9 - - + -
92G TRP* 1.3 84.7 - - - +
94G TYR* 1.3 81.1 + - + +
95G GLY 3.6 0.2 - - - -
2H SER* 2.5 32.3 + - - +
3H GLU* 5.1 4.5 + - - +
4H ALA* 4.0 12.3 + - - +
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Residues in contact with TYR 94 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A ARG* 3.5 33.6 + - + -
138A GLN* 3.6 19.6 + - - +
90G LEU* 2.8 40.4 + - + +
93G GLU* 1.3 88.2 - - + +
95G GLY* 1.3 59.2 + - - +
97G ILE 3.5 10.8 + - - +
98G LEU* 4.2 5.8 - - + -
99G PRO* 4.1 23.1 - - + -
102G LEU* 3.4 33.2 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il