Contacts of the helix formed by residues 447 - 499 (chain B) in PDB entry 2RD0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 447 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442B ILE* 3.8 28.7 - - + +
446B GLY* 1.3 68.3 - - - -
448B LYS* 1.3 54.7 + - - +
449B LEU 3.0 6.1 - - - -
450B HIS* 3.1 23.5 + - + +
451B GLU* 3.9 6.8 + - - +
596B GLU* 5.0 8.9 + - - -
597B TRP* 3.5 45.4 - - + +
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Residues in contact with LYS 448 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B VAL* 4.3 19.5 - - + -
446B GLY 2.9 4.4 - - - +
447B LYS* 1.3 75.7 - - - +
449B LEU* 1.3 58.4 + - - +
450B HIS 3.1 4.3 + - - -
451B GLU* 3.5 36.3 + - - +
452B TYR* 3.6 18.2 + - - +
455B GLN* 5.4 7.9 + - - +
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Residues in contact with LEU 449 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B VAL* 4.7 17.9 - - + +
446B GLY 3.7 5.6 + - - +
447B LYS 3.0 0.8 - - - -
448B LYS* 1.3 78.3 - - - +
450B HIS* 1.3 56.3 + - - +
452B TYR* 2.9 44.2 - - + -
453B ASN* 4.0 3.3 + - - +
576B THR* 3.9 36.3 - - + +
577B ARG* 4.8 5.4 - - - -
580B TYR* 3.9 31.0 - - + +
583B TRP* 5.9 1.6 - - + -
597B TRP* 4.1 23.3 - - + -
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Residues in contact with HIS 450 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447B LYS* 3.1 15.4 + - + +
449B LEU* 1.3 77.6 - - - +
451B GLU* 1.3 64.2 + - + +
452B TYR 3.0 5.2 - - - -
453B ASN* 2.9 34.7 + - + +
454B THR* 3.6 18.3 + - - -
597B TRP* 3.6 38.1 + + + +
598B LEU 4.9 3.6 - - - -
600B ASN* 3.1 40.6 - - - -
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Residues in contact with GLU 451 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447B LYS 3.9 7.6 + - - +
448B LYS* 3.5 38.2 + - - +
450B HIS* 1.3 84.3 - - + +
452B TYR* 1.3 57.5 + - - +
453B ASN 3.2 0.6 + - - -
454B THR* 4.4 4.2 - - - +
455B GLN* 3.2 41.2 + - - +
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Residues in contact with TYR 452 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448B LYS* 3.6 17.0 + - - +
449B LEU* 2.9 36.3 - - + +
450B HIS 3.0 0.2 - - - -
451B GLU* 1.3 78.5 - - - +
453B ASN* 1.3 62.8 - - + +
455B GLN* 4.0 11.5 - - - +
456B PHE* 3.3 25.7 + + - +
459B LYS* 5.7 0.5 - - - -
573B LEU* 2.5 49.3 + - + +
576B THR* 3.4 19.2 - - + -
577B ARG* 2.7 44.7 + - + +
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Residues in contact with ASN 453 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449B LEU 4.2 8.1 - - - +
450B HIS* 2.9 27.1 + - - +
452B TYR* 1.3 84.9 - - + +
454B THR* 1.3 64.0 + - - +
455B GLN 3.3 1.3 - - - -
456B PHE* 3.0 19.4 - - - +
457B GLN* 2.9 33.3 + - - +
577B ARG* 4.5 18.9 + - - +
598B LEU 5.4 5.3 + - - -
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Residues in contact with THR 454 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450B HIS* 3.6 23.9 + - - -
451B GLU* 4.1 4.5 + - - -
453B ASN* 1.3 76.0 + - - +
455B GLN* 1.3 65.1 + - - +
457B GLN* 3.2 17.4 + - + +
458B GLU* 3.3 10.6 + - - +
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Residues in contact with GLN 455 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448B LYS* 5.4 7.1 + - - +
451B GLU* 3.2 33.7 + - - +
452B TYR* 4.0 8.9 - - - +
454B THR* 1.3 76.7 - - - +
456B PHE* 1.3 64.0 + - - +
458B GLU* 3.0 33.8 + - - +
459B LYS* 3.1 29.0 + - - +
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Residues in contact with PHE 456 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B TYR* 3.3 18.4 + + + +
453B ASN* 3.0 21.9 + - - +
455B GLN* 1.3 78.9 - - - +
457B GLN* 1.3 80.1 + - - +
459B LYS* 3.2 15.4 - - - +
460B SER* 2.9 26.3 + - - -
570B LEU* 3.2 35.8 - - + +
573B LEU* 3.2 44.0 - - + -
574B ARG* 3.2 50.7 - - - -
577B ARG* 5.5 3.1 - - - -
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Residues in contact with GLN 457 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453B ASN* 2.9 34.2 + - - +
454B THR* 3.2 13.6 + - + +
455B GLN 3.1 0.8 - - - -
456B PHE* 1.3 102.9 - - - +
458B GLU* 1.3 58.1 + - - +
459B LYS 2.9 6.3 + - - -
460B SER* 3.4 20.4 + - - -
461B ARG* 2.8 38.5 + - + +
574B ARG* 4.7 2.6 - - - +
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Residues in contact with GLU 458 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454B THR 3.3 7.9 + - - +
455B GLN* 3.0 30.2 + - - +
457B GLN* 1.3 74.8 - - - +
459B LYS* 1.3 59.6 + - + +
461B ARG* 5.9 2.0 - - - +
462B GLU* 3.4 26.7 - - - +
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Residues in contact with LYS 459 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B TYR 5.7 0.7 - - - -
455B GLN* 3.1 40.0 + - - +
456B PHE* 3.2 18.6 - - + +
457B GLN 2.9 0.2 - - - -
458B GLU* 1.3 82.3 - - + +
460B SER* 1.3 54.7 + - - +
461B ARG 3.2 2.0 - - - -
462B GLU* 3.5 9.4 - - + +
463B TYR* 2.7 33.6 + - - +
566B ILE* 4.6 21.3 - - + +
569B ASP* 5.4 3.1 - - - +
570B LEU* 4.6 12.1 - - + -
573B LEU* 3.8 27.4 - - + +
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Residues in contact with SER 460 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B PHE* 2.9 21.5 + - - -
457B GLN* 3.2 26.7 + - - +
459B LYS* 1.3 77.0 - - - +
461B ARG* 1.3 58.4 + - - +
463B TYR* 3.4 8.7 - - - +
464B ASP* 2.9 23.0 - - - +
570B LEU* 3.8 20.6 - - - +
574B ARG* 3.6 15.8 + - - -
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Residues in contact with ARG 461 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457B GLN* 2.8 22.3 + - + +
458B GLU* 5.9 1.3 - - - +
460B SER* 1.3 74.0 - - - +
462B GLU* 1.3 65.0 + - - +
463B TYR 3.1 1.8 - - - -
464B ASP* 3.1 12.6 + - + +
465B ARG* 2.9 70.8 + - + +
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Residues in contact with GLU 462 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457B GLN 4.1 1.0 + - - -
458B GLU* 3.4 25.7 - - - +
459B LYS* 3.2 11.8 + - - +
461B ARG* 1.3 81.0 - - - +
463B TYR* 1.3 59.7 + - - +
465B ARG* 4.5 6.3 - - + +
466B LEU* 2.9 43.8 + - + +
566B ILE* 4.3 17.5 - - + +
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Residues in contact with TYR 463 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A PRO 3.9 1.4 + - - -
450A HIS* 3.2 34.3 + - + -
459B LYS 2.7 16.8 + - - +
460B SER 3.4 7.4 - - - +
462B GLU* 1.3 74.0 - - - +
464B ASP* 1.3 70.0 + - - +
466B LEU* 2.9 6.8 + - - +
467B TYR* 2.6 49.1 + + - +
563B MET* 3.5 38.5 - - + +
566B ILE* 5.1 14.1 - - + +
567B LYS* 2.8 36.7 + - + -
570B LEU* 4.1 24.2 - - + -
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Residues in contact with ASP 464 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460B SER 2.9 18.5 - - - +
461B ARG* 3.1 14.6 + - + +
463B TYR* 1.3 88.0 - - - +
465B ARG* 1.3 58.5 + - + +
467B TYR* 3.3 5.8 + - - +
468B GLU* 3.1 29.1 + - - +
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Residues in contact with ARG 465 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461B ARG* 2.9 52.8 + - + +
462B GLU* 4.3 7.2 - - + +
464B ASP* 1.3 75.6 - - + +
466B LEU* 1.3 63.6 + - - +
468B GLU* 4.5 3.8 - - - +
469B GLU* 3.6 21.0 + - - +
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Residues in contact with LEU 466 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462B GLU* 2.9 32.9 + - + +
463B TYR* 2.9 6.8 + - - +
465B ARG* 1.3 75.5 - - - +
467B TYR* 1.3 58.8 + - - +
469B GLU* 3.7 4.5 - - + +
470B TYR* 3.2 23.6 + - - +
559B ILE* 3.5 39.7 - - + +
562B ARG* 4.6 11.7 - - + -
563B MET* 3.8 18.8 - - + +
566B ILE* 4.0 24.0 - - + -
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Residues in contact with TYR 467 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A PRO* 5.8 0.5 - - - +
448A VAL* 3.1 11.2 + - + -
449A PRO 2.9 21.6 + - - -
450A HIS* 2.7 48.2 + + + -
463B TYR* 2.6 30.3 + + + +
464B ASP* 3.5 8.3 - - - +
465B ARG 3.2 0.2 - - - -
466B LEU* 1.3 72.9 - - - +
468B GLU* 1.3 55.9 + - - +
470B TYR* 3.0 25.8 - + - +
471B THR* 2.7 51.1 + - - -
563B MET* 3.0 36.1 - - + -
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Residues in contact with GLU 468 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464B ASP 3.1 15.2 + - - +
465B ARG* 4.6 4.5 - - - +
467B TYR* 1.3 73.8 - - - +
469B GLU* 1.3 58.2 + - - +
471B THR* 3.7 20.9 - - - +
472B ARG* 2.7 44.9 + - + +
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Residues in contact with GLU 469 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465B ARG 3.6 18.0 + - - +
466B LEU* 3.7 8.1 - - + +
468B GLU* 1.3 76.2 - - - +
470B TYR* 1.3 54.0 + - - +
472B ARG* 3.7 19.5 + - - +
473B THR* 2.4 50.4 + - - +
555B GLU* 5.1 6.6 - - - +
559B ILE* 3.6 30.3 - - + +
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Residues in contact with TYR 470 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A PRO* 3.4 28.8 - - + +
448A VAL 5.8 0.2 - - - -
466B LEU 3.2 13.8 + - - +
467B TYR* 3.0 39.0 + + + +
469B GLU* 1.3 81.2 - - - +
471B THR* 1.3 67.8 + - - +
473B THR* 4.0 3.1 - - - -
474B SER* 3.5 7.3 + - - -
556B TYR* 3.0 56.0 + + - -
559B ILE* 3.6 15.4 - - + +
560B ASP* 3.2 55.4 + - + -
563B MET* 5.0 6.7 - - + -
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Residues in contact with THR 471 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467B TYR* 2.7 42.0 + - - -
468B GLU* 3.7 18.5 - - - +
470B TYR* 1.3 75.6 - - - +
472B ARG* 1.3 68.6 + - - +
474B SER* 3.3 17.5 + - - -
475B GLN* 3.8 20.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 472 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468B GLU* 2.7 29.7 + - + +
469B GLU* 3.7 22.5 + - - +
471B THR* 1.3 74.4 - - - +
473B THR* 1.3 80.7 + - - +
474B SER 3.0 1.9 + - - -
475B GLN* 3.2 17.7 + - - +
476B GLU* 3.2 39.3 + - - +
552B GLN* 5.1 7.7 - - - +
----------------------------------------------------------
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Residues in contact with THR 473 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469B GLU* 2.4 39.3 + - - -
470B TYR* 4.0 5.4 - - - -
471B THR 3.4 0.2 - - - -
472B ARG* 1.3 84.2 + - - +
474B SER* 1.3 57.0 + - - +
476B GLU* 3.3 8.7 - - - +
477B ILE* 3.1 28.9 + - + +
552B GLN* 3.5 43.3 - - - +
555B GLU* 4.8 8.5 - - + -
556B TYR* 4.4 16.6 - - + +
559B ILE* 5.6 1.6 - - + -
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Residues in contact with SER 474 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
678A LYS* 5.6 3.7 + - - -
470B TYR* 3.5 4.4 + - - -
471B THR* 3.3 13.6 + - - -
472B ARG 3.0 0.8 + - - -
473B THR* 1.3 76.1 - - - +
475B GLN* 1.3 66.0 - - - +
477B ILE* 3.3 11.0 + - - +
478B GLN* 3.1 23.9 + - - +
556B TYR* 3.6 34.4 + - - -
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Residues in contact with GLN 475 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
678A LYS* 4.3 17.7 - - - +
843A ASP* 4.4 15.7 + - - +
471B THR* 4.1 24.0 - - - +
472B ARG* 3.2 8.4 + - - +
474B SER* 1.3 73.6 - - - +
476B GLU* 1.3 57.5 + - - +
478B GLN* 2.8 9.0 + - - +
479B MET* 2.7 43.9 + - + +
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Residues in contact with GLU 476 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472B ARG* 3.2 40.0 + - - +
473B THR* 3.3 18.8 - - - +
475B GLN* 1.3 77.8 - - - +
477B ILE* 1.3 62.0 + - - +
479B MET* 3.3 15.4 - - - +
480B LYS* 3.1 52.1 + - - +
552B GLN* 3.2 15.7 + - - +
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Residues in contact with ILE 477 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473B THR 3.1 15.8 + - - +
474B SER* 3.4 9.4 - - - +
476B GLU* 1.3 76.4 - - - +
478B GLN* 1.3 68.5 + - - +
480B LYS* 3.0 11.7 + - - +
481B ARG* 2.9 59.8 + - - +
549B LEU* 3.8 9.5 - - + +
552B GLN* 3.6 43.3 - - + +
553B ALA* 4.1 7.9 - - + +
556B TYR* 3.7 25.6 - - + -
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Residues in contact with GLN 478 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468A LYS* 4.5 20.4 - - - +
678A LYS* 4.5 24.2 - - - +
474B SER* 3.1 12.5 + - - +
475B GLN* 2.8 14.8 + - - +
477B ILE* 1.3 80.3 - - - +
479B MET* 1.3 53.6 + - - +
481B ARG* 3.6 39.6 + - + +
482B THR* 2.6 38.6 + - + +
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Residues in contact with MET 479 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 4.9 19.9 - - + -
475B GLN* 2.7 22.3 + - + +
476B GLU* 3.3 22.0 - - - +
478B GLN* 1.3 72.0 - - - +
480B LYS* 1.3 63.7 + - + +
481B ARG 3.2 0.2 + - - -
482B THR* 3.2 7.5 + - - -
483B ALA* 3.0 23.0 + - - +
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Residues in contact with LYS 480 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 5.4 3.6 - - + -
476B GLU* 3.2 42.6 + - - +
477B ILE* 3.0 10.4 + - - +
479B MET* 1.3 78.8 - - + +
481B ARG* 1.3 60.8 - - - +
483B ALA* 3.2 19.8 - - - +
484B ILE* 3.2 17.9 + - - +
545B LEU* 3.9 18.7 - - + +
548B ASP* 4.0 17.7 - - + -
549B LEU* 3.6 34.3 - - + +
552B GLN* 3.3 26.0 + - + +
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Residues in contact with ARG 481 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468A LYS* 5.7 1.6 - - - +
469A GLU* 3.2 44.4 + - - +
477B ILE* 2.9 36.6 + - - +
478B GLN* 3.6 37.8 + - + +
479B MET 3.1 0.2 - - - -
480B LYS* 1.3 77.1 - - - +
482B THR* 1.3 63.2 + - + +
483B ALA 3.2 0.2 - - - -
484B ILE* 3.5 18.1 + - + +
485B GLU* 3.2 20.6 + - - +
549B LEU* 4.5 21.8 - - + +
550B LYS* 4.2 15.4 - - - +
553B ALA* 5.5 3.2 - - - +
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Residues in contact with THR 482 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A GLN 4.8 9.4 - - - +
76A GLU* 5.3 6.3 - - + +
77A ALA* 3.3 18.2 - - + +
478B GLN* 2.6 28.7 + - + +
479B MET* 3.2 9.4 + - - -
481B ARG* 1.3 72.2 - - + +
483B ALA* 1.3 62.9 + - - +
484B ILE 3.2 0.4 - - - -
485B GLU* 3.3 16.2 + - - +
486B ALA* 3.1 18.5 + - - +
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Residues in contact with ALA 483 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 3.9 30.5 - - + -
75A GLN 5.7 1.3 - - - -
95A PHE* 3.7 3.8 - - + -
479B MET 3.0 15.2 + - - +
480B LYS 3.2 12.8 - - - +
481B ARG 3.2 0.2 - - - -
482B THR* 1.3 79.7 - - - +
484B ILE* 1.3 50.9 + - - +
486B ALA* 3.1 9.6 - - - +
487B PHE* 2.8 35.7 + - - -
545B LEU* 3.8 15.3 - - + -
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Residues in contact with ILE 484 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480B LYS 3.2 17.4 + - - +
481B ARG* 3.8 9.6 - - + +
482B THR 3.2 0.4 - - - -
483B ALA* 1.3 74.7 - - - +
485B GLU* 1.3 54.8 + - + +
487B PHE* 3.0 7.7 + - - +
488B ASN* 2.6 55.5 + - - +
542B ARG* 4.1 9.2 - - + +
545B LEU* 3.5 24.9 - - + -
546B GLU* 4.0 33.2 - - + +
549B LEU* 3.9 27.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 485 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A ALA* 3.9 13.5 - - + +
481B ARG* 3.2 23.6 + - - +
482B THR* 3.3 24.7 + - - +
483B ALA 3.4 0.4 - - - -
484B ILE* 1.3 73.8 - - + +
486B ALA* 1.3 66.6 + - - +
488B ASN* 3.0 17.6 + - - +
489B GLU* 3.0 30.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 486 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A VAL* 3.7 8.9 - - + +
74A THR 4.5 1.8 - - - +
75A GLN* 5.0 2.9 - - - +
77A ALA* 3.4 22.3 - - + +
95A PHE* 3.6 28.3 - - + -
482B THR 3.1 11.6 + - - +
483B ALA* 3.1 13.5 - - - +
485B GLU* 1.3 80.1 - - - +
487B PHE* 1.3 63.3 + - - +
489B GLU 3.5 0.2 + - - -
490B THR* 2.9 25.6 + - - -
----------------------------------------------------------
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Residues in contact with PHE 487 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 4.6 15.3 - + - -
95A PHE* 3.6 22.4 - + - -
96A GLN* 4.3 11.2 - - - -
483B ALA 2.8 18.7 + - - -
484B ILE* 3.0 11.0 + - - +
486B ALA* 1.3 73.4 - - - +
488B ASN* 1.3 63.1 + - - +
490B THR* 3.0 4.7 + - - -
491B ILE* 2.8 27.4 + - + +
538B ILE* 3.6 26.5 - - + -
541B SER* 3.6 34.3 - - - -
542B ARG* 3.9 28.9 - - + -
545B LEU* 3.4 36.1 - - + -
----------------------------------------------------------
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Residues in contact with ASN 488 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484B ILE* 2.6 38.8 + - - +
485B GLU* 3.0 23.1 + - - +
487B PHE* 1.3 72.4 - - - +
489B GLU* 1.3 58.1 + - - +
491B ILE* 2.9 8.2 + - - +
492B LYS* 2.6 40.3 + - - +
542B ARG* 3.3 23.0 + - - -
----------------------------------------------------------
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Residues in contact with GLU 489 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A VAL* 4.0 16.6 - - + -
77A ALA 5.1 11.3 - - - +
79A ARG* 3.3 39.4 + - + +
485B GLU* 3.0 19.1 + - - +
486B ALA 4.2 1.1 - - - +
488B ASN* 1.3 80.2 - - - +
490B THR* 1.3 57.0 + - - +
492B LYS* 3.4 32.9 + - - +
493B ILE* 3.0 32.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 490 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A VAL* 3.5 20.5 - - - +
95A PHE* 3.6 17.6 - - + -
96A GLN* 4.8 6.7 - - + -
98A PHE* 3.6 22.3 - - + -
486B ALA 2.9 16.9 + - - -
487B PHE* 3.0 12.4 + - - -
489B GLU* 1.3 74.3 - - - +
491B ILE* 1.3 68.9 + - - +
493B ILE* 2.8 16.4 + - - +
494B PHE* 3.3 27.4 + - + -
538B ILE* 4.4 14.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE 491 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487B PHE* 2.8 26.4 + - + +
488B ASN* 3.3 7.9 - - - +
490B THR* 1.3 71.4 - - - +
492B LYS* 1.3 65.1 + - - +
493B ILE 2.9 1.7 + - - -
494B PHE* 3.0 17.8 + - - +
495B GLU* 3.4 28.7 + - - +
535B ILE* 5.4 4.7 - - + -
538B ILE* 3.7 30.3 - - + -
539B ILE* 4.6 24.0 - - + -
542B ARG* 3.4 41.3 - - + +
----------------------------------------------------------
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Residues in contact with LYS 492 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ARG* 4.0 11.9 - - - +
488B ASN* 2.6 21.8 + - - +
489B GLU* 3.4 36.6 + - - +
491B ILE* 1.3 74.5 - - - +
493B ILE* 1.3 58.8 + - - +
495B GLU* 3.7 13.8 - - - +
496B GLU* 3.5 24.7 - - - +
----------------------------------------------------------
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Residues in contact with ILE 493 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A LEU* 4.2 10.5 - - + -
71A VAL* 5.9 3.4 - - + +
72A SER* 5.2 2.7 - - - -
73A VAL* 3.8 22.9 - - + +
79A ARG* 3.3 39.9 - - + +
98A PHE* 4.0 24.5 - - + -
100A LYS* 3.7 29.5 - - + -
489B GLU 3.0 16.5 + - - +
490B THR* 2.8 12.0 + - - +
492B LYS* 1.3 73.8 - - - +
494B PHE* 1.3 65.8 + - + +
495B GLU 3.2 3.6 + - - -
496B GLU* 3.4 20.9 + - - +
497B GLN* 3.6 8.0 + - - +
----------------------------------------------------------
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Residues in contact with PHE 494 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A GLU* 3.9 26.7 - - - -
25A LEU* 3.6 37.9 - - + -
31A ILE* 4.9 5.4 - - + -
96A GLN* 6.0 1.1 - - + -
98A PHE* 4.3 16.6 - + - -
490B THR* 3.3 32.0 + - + -
491B ILE* 3.0 8.3 + - - +
493B ILE* 1.3 76.8 - - + +
495B GLU* 1.3 64.8 + - - +
497B GLN* 4.0 3.1 - - - +
498B CYS* 3.5 20.3 + - - -
531B LEU* 3.9 28.1 - - + +
534B ARG* 5.0 7.4 - - + -
535B ILE* 3.9 21.5 - - + +
538B ILE* 3.7 30.7 - - + -
----------------------------------------------------------
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Residues in contact with GLU 495 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491B ILE* 3.4 29.4 - - - +
492B LYS* 3.7 12.3 - - - +
494B PHE* 1.3 74.5 - - - +
496B GLU* 1.3 55.4 + - + +
497B GLN 2.8 14.7 + - - -
498B CYS* 3.3 10.5 + - - -
499B GLN* 3.0 43.8 + - - +
535B ILE* 3.4 29.9 - - - +
539B ILE* 5.9 1.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU 496 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ARG* 3.0 28.7 + - - -
100A LYS* 4.4 15.0 + - - +
492B LYS* 3.5 21.2 - - + +
493B ILE* 3.4 16.3 + - - +
495B GLU* 1.3 77.1 - - + +
497B GLN* 1.3 50.4 + - - +
499B GLN* 4.2 8.8 - - - +
500B THR* 2.3 28.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 497 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A LEU* 3.5 35.6 - - + +
26A LEU 2.6 45.9 + - - +
27A PRO* 5.0 0.7 - - - +
29A GLY* 3.3 32.5 + - - +
30A MET 3.7 2.8 + - - +
31A ILE* 5.2 1.6 - - + +
100A LYS* 3.5 18.9 + - - +
493B ILE 3.6 4.4 + - - +
494B PHE 4.0 9.0 - - - +
495B GLU 2.8 3.2 + - - -
496B GLU* 1.3 76.9 - - - +
498B CYS* 1.3 56.3 + - - +
499B GLN 3.0 4.0 - - - -
500B THR* 2.8 28.7 + - - -
501B GLN 3.3 5.2 + - - -
531B LEU* 4.3 10.5 - - + -
----------------------------------------------------------
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Residues in contact with CYS 498 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494B PHE 3.5 12.5 + - - -
495B GLU* 3.4 19.3 - - - -
497B GLN* 1.3 78.3 - - - +
499B GLN* 1.3 59.6 + - - +
500B THR 3.3 1.1 - - - -
501B GLN* 3.6 11.7 - - - +
502B GLU* 2.8 29.3 - - - +
528B TYR* 4.9 14.9 - - + -
531B LEU* 3.6 27.8 - - + +
532B LYS* 6.0 5.6 - - + -
535B ILE* 4.7 11.2 - - - -
----------------------------------------------------------
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Residues in contact with GLN 499 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495B GLU* 3.0 36.8 + - - +
496B GLU* 4.3 7.1 - - - +
497B GLN 3.0 1.0 - - - -
498B CYS* 1.3 85.1 - - - +
500B THR* 1.3 61.8 + - - +
502B GLU* 3.5 23.0 - - + +
503B ARG* 4.7 15.2 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il