Contacts of the helix formed by residues 525 - 573 (chain B) in PDB entry 2RD0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 525 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A MET* 4.8 1.8 - - - +
522B GLN 5.0 0.7 - - - +
523B ARG* 2.9 38.1 + - + +
524B ILE* 1.3 73.0 - - - +
526B HIS* 1.3 76.8 + - + +
527B ASN* 2.8 15.7 + - - +
528B TYR* 3.0 15.2 + - - +
529B ASP* 3.0 23.0 - - - +
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Residues in contact with HIS 526 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
523B ARG 5.0 0.2 + - - -
525B MET* 1.3 91.3 - - + +
527B ASN* 1.3 62.2 + - - +
528B TYR 3.4 0.4 - - - -
529B ASP* 3.4 22.9 + - + +
530B LYS* 3.3 39.9 + - + +
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Residues in contact with ASN 527 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A GLY 3.7 0.5 - - - +
30A MET* 3.1 49.9 - - + +
31A ILE* 2.5 45.7 + - - +
56A TYR* 4.9 9.0 - - + -
501B GLN* 3.2 14.2 + - - -
525B MET 2.8 3.2 + - - +
526B HIS* 1.3 77.5 - - - +
528B TYR* 1.3 55.8 + - - +
530B LYS* 3.3 16.8 - - - +
531B LEU* 3.0 28.6 + - - +
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Residues in contact with TYR 528 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A MET* 6.3 0.2 - - + -
498B CYS* 4.9 14.8 - - + -
501B GLN* 3.3 28.5 - - - +
502B GLU* 4.2 20.0 + - - -
524B ILE 5.5 2.7 - - - +
525B MET 3.0 8.4 + - - +
527B ASN* 1.3 78.0 + - - +
529B ASP* 1.3 72.7 + - - +
530B LYS 3.3 0.9 + - - -
531B LEU* 3.9 6.9 - - - +
532B LYS* 3.2 59.3 + - + +
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Residues in contact with ASP 529 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
525B MET* 3.0 26.1 - - - +
526B HIS* 3.5 31.8 + - + +
527B ASN 3.3 0.4 - - - -
528B TYR* 1.3 83.4 - - - +
530B LYS* 1.3 57.0 - - - +
532B LYS* 3.7 22.8 + - - +
533B SER* 3.8 12.0 + - - -
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Residues in contact with LYS 530 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A ILE* 4.5 20.0 - - + -
33A THR* 5.6 2.9 - - - +
526B HIS* 3.3 37.3 + - + +
527B ASN* 3.3 32.7 - - - +
528B TYR 3.2 0.2 - - - -
529B ASP* 1.3 77.7 - - - +
531B LEU* 1.3 58.9 + - - +
532B LYS 3.0 2.2 - - - -
533B SER* 2.6 29.3 + - - -
534B ARG* 2.8 20.9 + - + +
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Residues in contact with LEU 531 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A GLY 3.8 22.2 - - - +
31A ILE* 4.0 22.2 - - + -
494B PHE* 3.9 41.9 - - + +
497B GLN* 4.3 7.2 - - + -
498B CYS* 3.6 34.5 - - + +
501B GLN* 4.3 9.2 - - - +
527B ASN* 3.0 17.7 + - - +
528B TYR* 3.9 7.9 - - - +
530B LYS* 1.3 79.3 - - - +
532B LYS* 1.3 59.2 + - - +
534B ARG* 4.1 5.8 + - + +
535B ILE* 3.3 21.5 + - + +
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Residues in contact with LYS 532 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498B CYS* 6.0 5.2 - - + -
528B TYR* 3.2 56.4 + - + +
529B ASP* 3.7 19.3 + - - +
530B LYS 3.0 0.4 - - - -
531B LEU* 1.3 79.8 - - + +
533B SER* 1.3 62.7 + - - +
534B ARG 3.2 0.4 - - - -
535B ILE* 3.1 22.2 + - + +
536B SER* 3.2 14.3 + - - -
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Residues in contact with SER 533 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
529B ASP 3.8 6.2 + - - -
530B LYS* 2.6 30.0 + - - -
532B LYS* 1.3 76.3 - - - +
534B ARG* 1.3 57.1 + - - -
536B SER* 3.5 18.9 - - - -
537B GLU* 3.7 11.3 + - - +
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Residues in contact with ARG 534 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A GLU* 3.1 38.7 + - - +
96A GLN* 3.2 39.2 - - - +
97A PRO* 4.9 4.9 - - - +
494B PHE* 5.0 10.0 - - + -
530B LYS* 2.8 17.4 + - + +
531B LEU* 4.3 6.7 - - + +
533B SER* 1.3 74.6 - - - +
535B ILE* 1.3 67.0 + - + +
536B SER 3.1 1.6 - - - -
537B GLU* 2.8 46.7 + - - +
538B ILE* 3.0 48.5 + - + +
541B SER* 5.6 1.2 + - - -
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Residues in contact with ILE 535 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491B ILE* 5.4 5.8 - - + +
494B PHE* 3.9 35.7 - - + +
495B GLU* 3.4 27.1 - - - +
498B CYS* 4.7 9.4 - - - -
531B LEU 3.3 18.6 + - - +
532B LYS* 3.1 14.8 + - + +
534B ARG* 1.3 75.8 - - + +
536B SER* 1.3 62.5 + - - +
538B ILE* 3.1 11.7 + - + +
539B ILE* 2.9 46.9 + - + +
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Residues in contact with SER 536 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
532B LYS 3.2 9.9 + - - -
533B SER* 3.5 16.4 - - - -
535B ILE* 1.3 79.3 - - - +
537B GLU* 1.3 62.2 + - - +
539B ILE* 3.4 5.0 + - - +
540B ASP* 2.8 38.7 + - - +
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Residues in contact with GLU 537 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533B SER 4.1 10.8 - - - +
534B ARG* 2.8 39.8 + - - +
536B SER* 1.3 76.6 - - - +
538B ILE* 1.3 50.4 + - - +
540B ASP* 4.1 4.7 - - - -
541B SER* 2.6 34.7 + - - -
544B ARG* 4.2 4.6 + - - +
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Residues in contact with ILE 538 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A GLN* 4.5 6.1 - - - +
487B PHE* 3.6 27.4 - - + -
490B THR* 4.4 10.1 - - + -
491B ILE* 3.7 21.5 - - + -
494B PHE* 3.7 38.1 - - + -
534B ARG* 3.0 44.3 + - + +
535B ILE* 3.1 10.3 + - + +
537B GLU* 1.3 74.5 - - - +
539B ILE* 1.3 60.2 + - - +
540B ASP 3.0 1.3 - - - -
541B SER* 2.8 20.8 + - - -
542B ARG* 2.8 15.2 + - - +
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Residues in contact with ILE 539 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491B ILE* 4.6 23.3 - - + -
495B GLU* 5.9 1.6 - - - +
535B ILE* 2.9 40.2 + - + +
536B SER* 4.0 5.2 - - - +
538B ILE* 1.3 74.8 - - - +
540B ASP* 1.3 59.5 + - - +
542B ARG* 3.8 27.6 + - - +
543B ARG* 2.9 27.4 + - + +
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Residues in contact with ASP 540 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536B SER* 2.8 27.7 + - - +
537B GLU* 4.3 2.5 - - - +
538B ILE 3.0 1.0 - - - -
539B ILE* 1.3 79.9 - - - +
541B SER* 1.3 61.1 + - - +
543B ARG* 3.6 31.0 + - - +
544B ARG* 3.0 46.5 + - - +
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Residues in contact with SER 541 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A GLN* 5.5 2.4 + - - -
487B PHE* 3.6 25.5 - - - -
534B ARG* 5.6 1.4 + - - -
537B GLU 2.6 20.4 + - - -
538B ILE* 2.8 10.7 + - - -
540B ASP* 1.3 77.5 - - - +
542B ARG* 1.3 58.2 + - - +
544B ARG* 3.2 25.0 + - - +
545B LEU* 2.9 26.7 + - - +
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Residues in contact with ARG 542 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484B ILE* 4.1 8.9 - - + +
487B PHE* 3.9 29.3 - - + -
488B ASN* 3.3 26.4 + - - -
491B ILE* 3.4 24.5 - - + +
538B ILE 2.8 13.8 + - - +
539B ILE* 3.8 28.9 + - - +
541B SER* 1.3 72.9 - - - +
543B ARG* 1.3 55.8 + - - +
545B LEU* 3.2 3.6 + - - +
546B GLU* 2.7 77.1 + - - +
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Residues in contact with ARG 543 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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539B ILE* 2.9 21.7 + - + +
540B ASP* 3.6 27.3 + - - +
542B ARG* 1.3 76.0 - - - +
544B ARG* 1.3 62.3 + - - +
546B GLU* 3.2 24.8 + - - +
547B GLU* 3.2 35.7 + - - +
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Residues in contact with ARG 544 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537B GLU* 4.2 3.6 + - - +
540B ASP* 3.0 44.5 + - - +
541B SER* 3.3 37.5 + - - +
543B ARG* 1.3 73.0 - - - +
545B LEU* 1.3 64.1 + - - +
547B GLU* 3.4 17.9 - - + +
548B ASP* 2.9 32.8 + - - +
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Residues in contact with LEU 545 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A TRP* 4.3 19.7 - - + -
480B LYS* 3.9 22.2 - - + +
483B ALA* 3.8 18.2 - - + -
484B ILE* 3.5 23.6 - - + -
487B PHE* 3.4 34.1 - - + -
541B SER 2.9 12.7 + - - +
542B ARG* 3.2 10.1 + - - +
544B ARG* 1.3 75.7 - - - +
546B GLU* 1.3 63.7 + - - +
548B ASP* 2.9 23.7 + - + +
549B LEU* 3.0 13.9 + - - +
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Residues in contact with GLU 546 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484B ILE* 4.0 22.8 - - + +
542B ARG* 2.7 61.5 + - - +
543B ARG* 3.2 17.5 + - - +
545B LEU* 1.3 71.6 - - - +
547B GLU* 1.3 62.2 + - - +
549B LEU* 3.1 26.1 + - + +
550B LYS* 3.4 9.0 + - - +
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Residues in contact with GLU 547 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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543B ARG* 3.2 35.6 + - - +
544B ARG* 3.4 22.2 - - + +
546B GLU* 1.3 72.9 - - - +
548B ASP* 1.3 65.7 + - - +
549B LEU 3.3 0.3 + - - -
550B LYS* 3.8 3.1 + - - +
551B LYS* 3.5 22.9 + - - +
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Residues in contact with ASP 548 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480B LYS* 4.0 13.5 - - - -
544B ARG* 2.9 26.0 + - - +
545B LEU* 2.9 17.8 + - + +
547B GLU* 1.3 79.7 - - - +
549B LEU* 1.3 60.9 + - - +
551B LYS* 3.7 5.2 - - - +
552B GLN* 3.4 24.9 + - - +
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Residues in contact with LEU 549 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477B ILE* 3.8 26.8 - - + +
480B LYS* 3.6 37.4 - - + +
481B ARG* 4.5 23.6 - - + +
484B ILE* 3.9 22.7 - - + -
545B LEU 3.0 10.7 + - - +
546B GLU* 3.1 14.3 + - + +
548B ASP* 1.3 73.7 - - - +
550B LYS* 1.3 72.0 + - + +
551B LYS 3.1 1.8 - - - -
552B GLN* 3.0 7.6 + - - +
553B ALA* 2.9 23.7 + - + +
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Residues in contact with LYS 550 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469A GLU* 4.6 12.3 + - - -
481B ARG* 4.2 17.4 - - - +
546B GLU 3.4 9.0 + - - +
547B GLU* 3.8 3.1 + - - +
549B LEU* 1.3 86.0 - - + +
551B LYS* 1.3 59.5 + - - +
553B ALA* 3.4 22.5 - - + +
554B ALA* 2.8 28.9 + - - +
557B ARG* 4.5 15.2 + - - +
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Residues in contact with LYS 551 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547B GLU 3.5 17.9 + - - +
548B ASP* 3.7 8.3 - - - +
550B LYS* 1.3 79.0 - - - +
552B GLN* 1.3 50.1 - - - +
554B ALA* 3.2 10.5 + - + +
555B GLU* 2.7 33.7 + - - +
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Residues in contact with GLN 552 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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472B ARG* 5.1 8.3 - - - +
473B THR* 3.5 28.9 - - - +
476B GLU* 3.2 36.2 + - - +
477B ILE* 3.6 14.9 - - + +
480B LYS* 3.3 21.3 + - - +
548B ASP 3.4 12.9 + - - +
549B LEU 3.0 11.8 + - - +
551B LYS* 1.3 76.3 - - + +
553B ALA* 1.3 54.7 + - - +
555B GLU* 3.4 12.3 - - + +
556B TYR* 2.7 32.4 + - - +
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Residues in contact with ALA 553 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477B ILE* 4.1 8.0 - - + +
481B ARG* 5.5 3.8 - - - +
549B LEU* 2.9 8.3 + - + +
550B LYS* 3.4 41.5 - - - +
551B LYS 3.2 0.2 - - - -
552B GLN* 1.3 73.2 - - - +
554B ALA* 1.3 55.9 + - - +
555B GLU 3.0 0.9 - - - -
556B TYR* 2.7 11.3 + - - +
557B ARG* 2.7 47.8 + - + +
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Residues in contact with ALA 554 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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550B LYS 2.8 19.9 + - - +
551B LYS* 3.4 11.4 - - + +
553B ALA* 1.3 71.9 - - - +
555B GLU* 1.3 60.4 + - - +
557B ARG* 3.5 28.2 + - - +
558B GLU* 3.3 21.5 + - - +
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Residues in contact with GLU 555 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469B GLU* 5.1 6.5 - - - +
473B THR* 4.8 9.6 - - + -
551B LYS* 2.7 20.4 + - + +
552B GLN* 3.4 14.8 - - + +
554B ALA* 1.3 71.8 - - - +
556B TYR* 1.3 66.0 + - - +
558B GLU* 2.9 23.2 + - - +
559B ILE* 2.9 47.3 + - + +
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Residues in contact with TYR 556 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A PRO* 4.6 8.1 - - - +
470A THR* 4.7 20.3 - - + +
470B TYR* 3.0 67.3 + + - -
473B THR* 4.4 13.9 - - + -
474B SER* 3.6 27.6 + - - -
477B ILE* 3.7 18.4 - - + -
552B GLN 2.7 21.5 + - - +
553B ALA* 2.7 9.4 + - - +
555B GLU* 1.3 71.3 - - - +
557B ARG* 1.3 61.4 + - + +
559B ILE* 3.3 9.3 + - + +
560B ASP* 2.9 32.2 + - + +
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Residues in contact with ARG 557 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A TYR* 5.6 16.6 + - - -
344A VAL 5.5 6.7 - - - +
345A ASN* 4.2 9.6 - - + +
550B LYS* 4.5 15.8 + - - +
553B ALA* 2.7 32.8 + - + +
554B ALA* 3.5 31.6 - - - +
556B TYR* 1.3 77.0 - - + +
558B GLU* 1.3 52.9 + - - +
560B ASP* 3.4 8.7 + - - +
561B LYS* 2.8 33.3 + - - +
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Residues in contact with GLU 558 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554B ALA 3.3 13.4 + - - +
555B GLU* 2.9 22.9 + - - +
557B ARG* 1.3 77.1 - - - +
559B ILE* 1.3 65.1 + - + +
561B LYS* 3.1 39.4 + - - +
562B ARG* 3.1 25.5 + - + +
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Residues in contact with ILE 559 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466B LEU* 3.5 39.8 - - + +
469B GLU* 3.6 27.4 - - + +
470B TYR* 3.6 26.4 - - + +
473B THR* 5.1 3.4 - - - +
555B GLU* 2.9 43.0 + - + +
556B TYR* 3.7 7.9 - - - +
558B GLU* 1.3 77.1 - - + +
560B ASP* 1.3 60.6 + - - +
562B ARG* 4.2 0.9 - - - -
563B MET* 3.4 23.4 + - - +
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Residues in contact with ASP 560 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A VAL 5.0 1.7 - - - +
345A ASN* 3.0 25.9 + - + +
448A VAL* 5.9 1.6 - - - +
470B TYR* 3.2 32.8 + - + -
556B TYR* 2.9 17.2 + - + +
557B ARG* 3.4 13.0 - - - +
559B ILE* 1.3 75.2 - - - +
561B LYS* 1.3 65.0 + - - +
563B MET* 3.2 6.2 + - - +
564B ASN* 2.9 32.4 + - - +
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Residues in contact with LYS 561 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345A ASN* 3.5 32.2 - - - +
346A VAL* 3.4 17.7 - - + +
347A ASN* 3.6 32.3 + - - +
557B ARG 2.8 14.7 + - - +
558B GLU* 3.1 28.7 + - - +
560B ASP* 1.3 74.5 - - - +
562B ARG* 1.3 77.9 + - + +
564B ASN 3.0 12.8 + - - -
565B SER* 3.4 9.9 + - - -
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Residues in contact with ARG 562 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466B LEU* 4.6 20.4 - - + -
558B GLU* 3.1 21.2 + - + +
559B ILE* 5.5 0.2 - - - -
561B LYS* 1.3 94.4 - - + +
563B MET* 1.3 56.6 + - - +
565B SER* 3.6 7.4 + - - -
566B ILE* 3.2 36.5 + - + +
----------------------------------------------------------
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Residues in contact with MET 563 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448A VAL* 5.2 5.8 - - + -
463B TYR* 3.5 37.0 - - + +
466B LEU* 3.8 24.4 - - + +
467B TYR* 3.0 47.6 - - + -
470B TYR* 5.0 7.6 - - + -
559B ILE 3.4 14.3 + - - +
560B ASP* 3.2 9.1 + - - +
561B LYS 3.1 0.8 - - - -
562B ARG* 1.3 75.2 - - - +
564B ASN* 1.3 63.9 + - - +
565B SER 3.0 9.1 + - - -
566B ILE* 4.3 4.6 - - + +
567B LYS* 3.4 42.2 + - - +
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Residues in contact with ASN 564 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345A ASN* 2.8 39.9 + - - +
346A VAL* 3.6 14.9 - - + +
407A CYS* 4.8 11.2 - - - -
448A VAL* 4.3 22.8 - - - +
560B ASP* 2.9 21.2 + - - +
561B LYS 3.0 2.4 + - - +
563B MET* 1.3 77.5 + - - +
565B SER* 1.3 58.0 + - - +
567B LYS* 4.4 16.7 - - - +
568B PRO* 4.6 8.3 - - - +
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Residues in contact with SER 565 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346A VAL* 4.3 8.8 - - - +
349A ARG* 6.2 0.2 - - - +
561B LYS* 3.6 13.9 - - - -
562B ARG* 3.7 11.7 - - - -
563B MET 3.0 0.4 - - - -
564B ASN* 1.3 79.2 - - - +
566B ILE* 1.3 67.8 + - - +
567B LYS 3.6 0.4 - - - -
568B PRO* 3.9 14.7 - - - +
569B ASP* 4.2 7.4 - - - +
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Residues in contact with ILE 566 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459B LYS* 4.6 25.1 - - + +
462B GLU* 4.3 18.6 - - + +
463B TYR* 5.1 9.2 - - + +
466B LEU* 4.0 26.0 - - + -
562B ARG* 3.2 20.9 + - + +
563B MET* 3.6 5.6 + - + +
565B SER* 1.3 79.2 - - - +
567B LYS* 1.3 52.1 + - - +
569B ASP* 2.7 17.1 + - + +
570B LEU* 2.7 51.5 + - + +
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Residues in contact with LYS 567 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407A CYS* 5.8 0.4 - - - -
448A VAL* 4.5 10.4 - - + +
449A PRO 4.3 5.7 + - - -
452A LEU 3.4 27.9 + - - +
453A GLU* 3.8 24.5 - - + +
463B TYR* 2.8 37.2 + - + -
563B MET* 3.4 31.9 + - - +
564B ASN* 4.4 15.3 - - - +
566B ILE* 1.3 77.6 - - - +
568B PRO* 1.4 65.8 - - + +
570B LEU* 3.3 11.2 + - + +
571B ILE* 2.9 47.7 + - + +
----------------------------------------------------------
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Residues in contact with PRO 568 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408A SER 4.8 7.2 - - - +
409A VAL* 4.7 30.3 - - + +
410A LYS* 4.8 6.5 - - - +
453A GLU* 5.4 5.1 - - - +
564B ASN 4.6 4.5 - - - +
565B SER* 3.9 20.4 - - - +
566B ILE 3.5 2.2 - - - -
567B LYS* 1.4 95.1 - - + +
569B ASP* 1.3 52.3 + - + +
571B ILE* 3.1 9.1 + - + +
572B GLN* 2.7 49.1 + - - +
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Residues in contact with ASP 569 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459B LYS* 5.4 3.1 - - - +
565B SER 4.2 8.1 - - - +
566B ILE* 2.7 19.0 + - + +
568B PRO* 1.3 75.2 - - - +
570B LEU* 1.3 61.7 + - - +
572B GLN* 3.3 16.2 + - - +
573B LEU* 3.1 43.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 570 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B PHE* 3.2 50.5 - - + +
459B LYS* 4.6 6.1 - - + -
460B SER* 3.8 30.5 - - - +
463B TYR* 4.1 40.6 - - + -
566B ILE* 2.7 29.6 + - + +
567B LYS* 3.6 9.0 - - + +
569B ASP* 1.3 73.6 - - - +
571B ILE* 1.3 64.9 + - + +
573B LEU* 4.6 6.1 - - - -
574B ARG* 3.4 12.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 571 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A VAL* 5.7 7.6 - - + -
453A GLU* 4.4 24.9 - - + +
454A ASP 5.5 2.7 - - - +
567B LYS* 2.9 39.5 + - + +
568B PRO* 3.6 6.5 - - + +
570B LEU* 1.3 81.9 - - + +
572B GLN* 1.3 62.1 + - + +
573B LEU 3.2 1.6 - - - -
574B ARG* 3.1 32.8 + - + +
575B LYS* 3.9 15.0 + - + +
----------------------------------------------------------
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Residues in contact with GLN 572 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A VAL* 5.2 7.0 - - + -
410A LYS* 3.3 44.3 - - + +
414A GLY* 4.1 14.6 - - - -
568B PRO* 2.7 32.5 + - + +
569B ASP* 3.3 15.8 + - - +
571B ILE* 1.3 74.1 - - + +
573B LEU* 1.3 62.7 + - + +
574B ARG 3.3 0.9 - - - -
575B LYS* 4.6 1.1 + - - +
576B THR* 3.1 18.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU 573 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B TYR* 2.5 43.7 + - + +
456B PHE* 3.2 28.0 - - + -
459B LYS* 3.8 30.7 - - + +
569B ASP* 3.1 35.6 + - - +
570B LEU* 4.6 2.2 - - - -
571B ILE 3.2 0.6 - - - -
572B GLN* 1.3 83.1 - - + +
574B ARG* 1.3 58.9 + - - +
576B THR* 4.2 5.2 - - - +
577B ARG* 4.5 0.5 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il