Contacts of the helix formed by residues 110 - 139 (chain C) in PDB entry 2UX1


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR 110 (chain C).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51C  ARG      4.4     3.6    -      -       -      -
    108C  ASN      4.2     7.0    -      -       -      +
    109C  VAL*     1.3    75.9    -      -       -      +
    111C  ILE*     1.3    66.7    +      -       -      +
    112C  GLU*     3.5    15.5    +      -       -      +
    113C  GLU*     2.8    43.1    +      -       -      +
    114C  GLN*     3.0    22.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 111 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50C  MET*     3.2    38.8    -      -       +      +
     51C  ARG      3.4    22.4    +      -       -      +
     52C  GLY*     3.5    30.0    -      -       -      +
     53C  ARG      3.5     6.3    -      -       -      +
     55C  PHE      4.2     4.5    -      -       -      +
     58C  TRP*     4.7     8.1    -      -       +      -
    110C  THR*     1.3    71.8    -      -       -      +
    112C  GLU*     1.3    65.5    +      -       -      +
    114C  GLN*     3.1     7.7    +      -       -      +
    115C  LEU*     2.9    45.9    +      -       +      +
     53L  ARG*     3.7    26.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 112 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    110C  THR*     3.5    12.8    +      -       -      +
    111C  ILE*     1.3    87.2    +      -       -      +
    113C  GLU*     1.3    58.1    +      -       +      +
    115C  LEU*     3.5     0.8    +      -       -      +
    116C  ALA*     3.1    27.2    +      -       -      +
    166C  LEU*     3.8    28.9    -      -       +      +
    173E  EPE      5.9     0.5    -      -       -      -
     53L  ARG*     3.8    30.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 113 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108C  ASN      4.4     0.9    -      -       -      +
    109C  VAL*     3.3    25.0    -      -       +      +
    110C  THR*     2.8    44.0    +      -       -      +
    112C  GLU*     1.3    74.6    -      -       +      +
    114C  GLN*     1.3    60.3    +      -       -      +
    116C  ALA*     3.3     7.4    +      -       -      +
    117C  ARG*     2.9    31.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 114 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45C  GLN*     5.6     0.8    -      -       -      +
     46C  VAL*     3.5    30.4    -      -       +      +
     49C  TYR*     4.1    24.4    +      -       -      +
     50C  MET*     4.3    13.6    -      -       +      +
    106C  ASP      4.0    10.9    +      -       -      +
    109C  VAL*     3.7    26.9    +      -       +      +
    110C  THR      3.0    20.2    +      -       -      +
    111C  ILE*     3.5    10.3    -      -       -      +
    113C  GLU*     1.3    76.6    -      -       -      +
    115C  LEU*     1.3    62.2    +      -       -      +
    117C  ARG*     3.1    38.8    +      -       -      +
    118C  VAL*     3.0    25.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 115 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50C  MET*     5.0     4.5    -      -       +      -
     58C  TRP*     3.7    54.5    -      -       +      +
     62C  MET*     4.0    15.7    -      -       +      -
    111C  ILE*     2.9    32.7    +      -       +      +
    112C  GLU*     3.9     4.7    -      -       -      +
    113C  GLU      3.3     0.2    -      -       -      -
    114C  GLN*     1.3    76.3    -      -       -      +
    116C  ALA*     1.3    57.7    +      -       -      +
    118C  VAL*     3.2     6.2    +      -       -      +
    119C  VAL*     2.9    30.0    +      -       -      +
    162C  LEU*     3.9    15.6    -      -       +      +
    165C  GLU*     4.1    15.9    -      -       +      -
    166C  LEU*     4.2    23.6    -      -       +      -
     53L  ARG*     5.1     2.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 116 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    112C  GLU      3.1    18.2    +      -       -      +
    113C  GLU*     3.5     8.3    -      -       -      +
    115C  LEU*     1.3    73.8    -      -       -      +
    117C  ARG*     1.3    63.6    +      -       -      +
    119C  VAL*     3.4     6.2    +      -       -      +
    120C  GLU*     3.1    30.1    +      -       +      +
    163C  GLN*     5.9     0.2    -      -       -      -
    166C  LEU*     4.0    13.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 117 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42C  ILE*     3.8    29.3    -      -       +      +
     45C  GLN*     2.7    33.7    +      -       -      +
     46C  VAL*     4.0    11.2    -      -       +      +
    101C  LYS      5.4     3.0    +      -       -      -
    102C  GLU*     5.4     0.2    -      -       -      +
    103C  VAL*     3.9    25.8    -      -       -      +
    109C  VAL*     4.8    11.8    -      -       +      +
    113C  GLU      2.9    18.4    +      -       -      +
    114C  GLN*     3.1    37.8    +      -       -      +
    116C  ALA*     1.3    75.7    -      -       -      +
    118C  VAL*     1.3    64.5    +      -       +      +
    120C  GLU*     3.1     8.0    +      -       -      +
    121C  VAL*     3.1    27.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 118 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42C  ILE*     5.9     1.6    -      -       +      -
     43C  LEU*     3.8    16.4    -      -       +      -
     46C  VAL*     4.3    12.8    -      -       +      -
     62C  MET*     4.0    26.9    -      -       +      -
     65C  TYR*     4.4     6.3    -      -       +      -
    114C  GLN      3.0    16.2    +      -       -      +
    115C  LEU*     3.2     9.8    +      -       -      +
    117C  ARG*     1.3    75.7    -      -       -      +
    119C  VAL*     1.3    63.3    +      -       -      +
    121C  VAL*     3.2     9.0    +      -       -      +
    122C  PHE*     2.9    48.6    +      -       +      -
    162C  LEU*     3.8    17.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 119 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115C  LEU      2.9    20.6    +      -       -      +
    116C  ALA*     3.6     9.9    -      -       -      +
    117C  ARG      3.3     0.2    -      -       -      -
    118C  VAL*     1.3    75.1    -      -       -      +
    120C  GLU*     1.3    62.9    +      -       -      +
    122C  PHE*     3.1     8.2    +      -       -      +
    123C  ARG*     2.8    55.2    +      -       +      +
    159C  ILE*     4.5     5.6    -      -       +      +
    162C  LEU*     3.6    31.2    -      -       +      -
    163C  GLN*     3.6    30.3    -      -       +      +
    166C  LEU*     4.3     5.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 120 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100C  LEU*     5.6     0.4    -      -       -      -
    116C  ALA*     3.1    20.3    +      -       +      +
    117C  ARG*     3.1     5.8    +      -       -      +
    119C  VAL*     1.3    78.7    -      -       -      +
    121C  VAL*     1.3    65.1    +      -       +      +
    123C  ARG*     3.3    36.2    +      -       -      +
    124C  TYR*     3.1    22.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 121 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39C  ALA*     3.6    35.7    -      -       +      +
     42C  ILE*     3.9    34.8    -      -       +      -
     43C  LEU*     5.8     3.1    -      -       +      -
    100C  LEU*     4.2    20.6    -      -       +      -
    117C  ARG*     3.1    15.2    +      -       +      +
    118C  VAL*     3.5     8.3    -      -       -      +
    120C  GLU*     1.3    75.9    -      -       -      +
    122C  PHE*     1.3    65.0    +      -       +      +
    124C  TYR*     3.2     4.7    +      -       -      +
    125C  LEU*     2.9    32.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 122 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43C  LEU*     4.3    15.9    -      -       +      -
     65C  TYR*     3.8    28.9    -      +       +      -
     69C  ILE*     4.6    13.9    -      -       +      -
    118C  VAL*     2.9    29.5    +      -       +      +
    119C  VAL      3.4     7.6    -      -       -      +
    121C  VAL*     1.3    80.3    -      -       +      +
    123C  ARG*     1.3    60.3    +      -       -      +
    125C  LEU*     3.3    11.7    +      -       +      +
    126C  ALA*     2.9    26.5    +      -       -      +
    155C  ILE*     3.3    25.3    -      -       +      +
    158C  HIS*     3.8    28.5    -      +       +      -
    159C  ILE*     3.6    18.2    -      -       +      -
    162C  LEU*     3.7    31.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 123 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    119C  VAL*     2.8    30.9    +      -       +      +
    120C  GLU*     3.3    35.2    +      -       -      +
    121C  VAL      3.3     0.2    -      -       -      -
    122C  PHE*     1.3    73.3    -      -       -      +
    124C  TYR*     1.3    61.8    +      -       -      +
    126C  ALA*     3.4     3.3    +      -       -      +
    127C  ALA*     3.1    21.7    +      -       -      +
    159C  ILE*     3.8    20.6    -      -       +      +
    163C  GLN*     3.4    30.1    -      -       -      +
    170C  PRO      2.9    29.9    +      -       -      -
    171C  LYS*     3.2    25.3    +      -       -      +
    172C  LEU*     3.9    10.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 124 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31C  GLN*     3.7     4.0    +      -       -      +
     35C  ASP*     2.6    44.1    +      -       +      -
     99C  GLN*     3.1    38.6    -      -       +      +
    100C  LEU*     3.9    27.1    -      -       +      -
    120C  GLU      3.1    13.7    +      -       -      +
    121C  VAL      3.5     6.5    -      -       -      +
    123C  ARG*     1.3    72.4    -      -       -      +
    125C  LEU*     1.3    70.5    +      -       +      +
    127C  ALA*     3.0    10.6    +      -       +      +
    128C  LEU*     2.8    40.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 125 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35C  ASP*     4.3    22.2    -      -       +      +
     36C  LEU*     4.0    32.1    -      -       +      -
     39C  ALA*     4.1    14.6    -      -       +      -
     69C  ILE*     4.0    17.7    -      -       +      -
    100C  LEU*     4.8     0.9    -      -       +      -
    121C  VAL*     2.9    25.3    +      -       +      +
    122C  PHE*     3.7    14.6    -      -       +      +
    124C  TYR*     1.3    90.1    -      -       +      +
    126C  ALA*     1.3    57.2    +      -       -      +
    128C  LEU*     3.2     7.5    +      -       +      +
    129C  PHE*     2.9    51.1    +      -       +      -
    155C  ILE*     4.7     6.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 126 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    122C  PHE      2.9    16.7    +      -       -      +
    123C  ARG*     3.8     5.2    -      -       -      +
    125C  LEU*     1.3    75.6    -      -       -      +
    127C  ALA*     1.3    57.3    +      -       -      +
    129C  PHE*     3.4     5.0    +      -       -      -
    130C  GLN*     2.9    28.8    +      -       -      +
    152C  LYS*     3.8    25.0    -      -       +      +
    155C  ILE*     4.2    12.9    -      -       +      +
    156C  GLU*     4.4    16.4    -      -       +      +
    159C  ILE*     4.5     5.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 127 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    123C  ARG      3.1    13.1    +      -       -      +
    124C  TYR*     3.0    15.0    +      -       +      +
    126C  ALA*     1.3    76.8    -      -       -      +
    128C  LEU*     1.3    61.8    +      -       -      +
    130C  GLN*     3.3     8.5    +      -       -      +
    131C  LYS*     3.1    21.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 128 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22C  LEU*     4.5     5.6    -      -       +      -
     28C  VAL*     3.8    19.5    -      -       +      +
     31C  GLN*     3.8    21.1    -      -       +      -
     32C  ALA*     3.5    30.1    -      -       +      -
     35C  ASP*     3.3    29.6    -      -       +      +
    124C  TYR*     2.8    23.4    +      -       +      +
    125C  LEU*     3.5    11.9    -      -       +      +
    127C  ALA*     1.3    77.6    -      -       -      +
    129C  PHE*     1.3    67.5    +      -       +      +
    131C  LYS*     3.1    10.9    +      -       +      +
    132C  GLY*     2.8    24.6    +      -       -      -
    148C  PHE*     4.7     0.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 129 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32C  ALA*     4.3    11.4    -      -       +      -
     36C  LEU*     4.0    25.1    -      -       +      -
     72C  TYR*     4.6     4.5    -      +       -      -
     76C  MET*     3.7    23.8    -      -       +      -
    125C  LEU*     2.9    32.2    +      -       +      +
    126C  ALA*     3.9     4.0    -      -       -      +
    128C  LEU*     1.3    80.3    -      -       +      +
    130C  GLN*     1.3    61.4    +      -       -      +
    133C  PHE*     2.8    28.8    +      -       -      +
    148C  PHE*     3.5    42.5    -      +       +      +
    151C  ALA*     3.6    24.9    -      -       +      -
    152C  LYS*     3.8    18.6    -      -       +      +
    155C  ILE*     4.0    20.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 130 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    126C  ALA      2.9    14.7    +      -       -      +
    127C  ALA*     3.5    12.1    -      -       -      +
    129C  PHE*     1.3    76.4    -      -       -      +
    131C  LYS*     1.3    56.8    +      -       -      +
    133C  PHE*     3.3    15.0    +      -       -      +
    134C  ASP*     3.0    64.6    +      -       -      +
    152C  LYS*     3.2    32.1    +      -       -      +
    140J  GLY      5.1     8.8    +      -       -      +
    142J  SER*     4.8     5.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 131 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22C  LEU*     6.2     1.8    -      -       +      -
     28C  VAL*     4.5     6.5    -      -       +      -
    127C  ALA      3.1    13.6    +      -       -      +
    128C  LEU*     3.4    13.9    -      -       +      +
    130C  GLN*     1.3    72.3    -      -       -      +
    132C  GLY*     1.3    61.4    +      -       -      +
    134C  ASP*     3.8     6.9    -      -       -      +
    135C  VAL*     2.9    38.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 132 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28C  VAL*     3.6    18.2    -      -       -      +
    128C  LEU      2.8    15.0    +      -       -      -
    129C  PHE      3.7     1.8    -      -       -      -
    130C  GLN      3.3     0.2    -      -       -      -
    131C  LYS*     1.3    72.4    -      -       -      +
    133C  PHE*     1.3    62.8    +      -       -      +
    135C  VAL*     4.1     0.3    -      -       -      +
    136C  SER*     2.8    31.0    +      -       -      -
    148C  PHE*     3.4    29.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 133 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    129C  PHE      2.8    17.7    +      -       -      +
    130C  GLN*     3.4    15.3    -      -       -      +
    132C  GLY*     1.3    75.5    -      -       -      +
    134C  ASP*     1.3    72.1    +      -       -      +
    136C  SER*     3.1     4.7    +      -       -      -
    137C  ASP*     2.9    40.6    +      -       +      +
    145C  ASN*     3.0    51.0    +      -       -      +
    148C  PHE*     3.9     8.4    -      -       +      +
    149C  ASN*     3.6    25.6    -      -       +      +
    152C  LYS*     5.9     2.7    -      -       +      -
    140J  GLY      6.2     0.2    -      -       -      -
    142J  SER*     3.3    36.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 134 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    130C  GLN*     3.0    46.1    +      -       -      +
    131C  LYS*     3.8     7.5    -      -       -      +
    132C  GLY      3.3     0.2    -      -       -      -
    133C  PHE*     1.3    85.4    -      -       -      +
    135C  VAL*     1.3    59.6    +      -       +      +
    137C  ASP*     3.3     4.8    +      -       -      +
    138C  GLU*     2.8    30.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 135 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22C  LEU      4.1    16.4    -      -       -      +
     23C  ALA      4.3     4.7    -      -       -      +
     24C  ASP*     3.4    41.1    -      -       -      +
     25C  SER*     3.5     6.5    -      -       -      +
     28C  VAL*     4.1     9.6    -      -       +      -
    131C  LYS*     2.9    23.7    +      -       +      +
    132C  GLY      4.1     2.2    -      -       -      +
    134C  ASP*     1.3    77.8    -      -       +      +
    136C  SER*     1.3    61.4    +      -       -      +
    138C  GLU*     3.2     7.4    +      -       -      +
    139C  GLU*     3.1    30.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 136 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25C  SER*     3.3    19.7    -      -       -      -
    132C  GLY      2.8    23.7    +      -       -      -
    133C  PHE      3.1     7.6    +      -       -      -
    135C  VAL*     1.3    75.8    -      -       -      +
    137C  ASP*     1.3    59.7    +      -       -      +
    139C  GLU      3.3     0.9    +      -       -      -
    140C  GLY      3.1     3.6    +      -       -      -
    141C  ASP*     2.9    44.6    +      -       -      +
    144C  THR*     3.9    13.2    -      -       -      -
    145C  ASN*     3.1    25.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 137 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    133C  PHE*     2.9    31.6    +      -       +      +
    134C  ASP*     3.6     6.7    -      -       -      +
    136C  SER*     1.3    76.0    +      -       -      +
    138C  GLU*     1.3    62.4    +      -       -      +
    140C  GLY*     3.3    12.8    +      -       -      +
    141C  ASP      5.1     0.4    -      -       -      +
    145C  ASN*     3.6    20.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 138 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    134C  ASP      2.8    17.5    +      -       -      +
    135C  VAL*     3.2     9.8    +      -       -      +
    137C  ASP*     1.3    78.0    -      -       -      +
    139C  GLU*     1.3    60.4    +      -       +      +
    140C  GLY      3.7     0.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 139 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23C  ALA      3.5     6.6    -      -       -      +
     24C  ASP*     3.0    29.2    -      -       -      +
     25C  SER*     2.9    38.0    +      -       -      +
    135C  VAL*     3.1    18.4    +      -       +      +
    136C  SER      3.3     3.5    +      -       -      +
    137C  ASP      3.2     0.4    -      -       -      -
    138C  GLU*     1.3    80.3    -      -       +      +
    140C  GLY*     1.3    61.9    +      -       -      +
    141C  ASP*     3.3     4.4    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il