Contacts of the helix formed by residues 141 - 166 (chain A) in PDB entry 2UX1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 141 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU* 3.8 26.8 - - + +
25A SER* 3.8 19.6 - - - +
79A ARG* 3.1 21.7 + - - -
83A LEU* 3.2 19.9 - - - +
136A SER* 2.9 12.1 + - - +
139A GLU 3.2 1.6 + - - -
140A GLY* 1.3 72.5 - - - +
142A SER* 1.3 58.3 + - - +
143A VAL 3.9 0.5 + - - -
144A THR* 2.8 31.3 + - - -
145A ASN* 3.0 26.2 + - - +
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Residues in contact with SER 142 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A ASP* 6.4 0.2 - - - +
140A GLY 3.1 8.6 + - - -
141A ASP* 1.3 73.5 + - - +
143A VAL* 1.3 63.3 + - - +
145A ASN* 3.3 10.3 - - - +
146A ASP 3.1 18.5 + - - -
130E GLN* 5.0 5.9 + - - -
133E PHE* 3.3 42.4 - - - -
149E ASN* 2.7 36.0 + - - -
152E LYS* 5.2 3.8 - - - +
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Residues in contact with VAL 143 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ARG* 3.5 40.8 - - - +
141A ASP* 3.3 1.0 + - - -
142A SER* 1.3 76.5 + - - +
144A THR* 1.3 65.7 + - - +
146A ASP* 3.2 6.7 + - - +
147A ILE* 3.2 28.0 + - + +
149E ASN* 3.6 20.6 - - - +
152E LYS* 4.3 17.0 - - + -
153E ALA* 3.6 42.8 - - + +
156E GLU* 4.5 0.7 - - - +
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Residues in contact with THR 144 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A SER* 4.6 5.2 - - - -
29A LEU* 4.0 21.1 - - + -
79A ARG* 3.2 18.4 + - - +
83A LEU* 3.9 1.6 - - - +
136A SER* 4.0 9.9 - - - -
141A ASP* 2.8 34.1 + - - +
142A SER 3.5 0.2 - - - -
143A VAL* 1.3 78.4 - - - +
145A ASN* 1.3 63.3 + - - +
147A ILE* 3.3 11.6 + - - +
148A PHE* 3.1 53.5 + - + -
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Residues in contact with ASN 145 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A PHE* 2.8 67.9 + - - -
136A SER* 3.3 10.5 + - - +
137A ASP* 3.6 16.7 - - - +
141A ASP 3.0 15.7 + - - +
142A SER* 3.3 16.2 - - - +
143A VAL 3.2 0.2 - - - -
144A THR* 1.3 77.2 - - - +
146A ASP* 1.3 58.8 + - - +
148A PHE* 3.5 2.1 + - - +
149A ASN* 3.0 26.0 + - - +
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Residues in contact with ASP 146 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A SER 3.1 6.7 + - - -
143A VAL* 3.2 7.8 + - - +
145A ASN* 1.3 75.9 + - - +
147A ILE* 1.3 64.8 + - - +
149A ASN* 4.2 8.6 + - - +
150A VAL* 2.9 42.2 + - - +
149E ASN* 3.9 21.8 + - - +
150E VAL* 5.0 12.6 - - - +
146I ASP* 3.9 18.2 - - - +
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Residues in contact with ILE 147 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A LEU* 5.3 2.7 - - + -
72A TYR* 5.5 3.0 - - + -
75A GLU* 3.9 36.8 - - + +
76A MET* 3.7 32.8 - - + -
79A ARG* 3.8 38.8 - - + -
143A VAL* 3.2 22.1 + - + +
144A THR* 3.3 9.4 + - + +
146A ASP* 1.3 76.9 - - + +
148A PHE* 1.3 62.2 - - + +
150A VAL* 3.4 4.5 + - - +
151A ALA* 3.2 20.6 + - - +
153E ALA* 6.4 0.2 - - + -
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Residues in contact with PHE 148 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A VAL* 3.9 20.2 - - + -
29A LEU* 3.7 24.5 - - + -
32A ALA* 4.4 6.3 - - + -
76A MET* 3.8 18.6 - - + -
128A LEU* 4.7 0.7 - - + -
129A PHE* 3.5 52.6 - + - +
132A GLY* 3.5 33.7 - - - -
133A PHE* 3.9 6.5 - - - +
136A SER* 4.4 0.2 - - - -
144A THR* 3.1 46.8 + - + -
145A ASN 3.9 4.0 - - - +
147A ILE* 1.3 76.0 - - + +
149A ASN* 1.3 57.9 + - - +
151A ALA* 3.5 0.8 + - - +
152A LYS* 3.0 31.0 + - - +
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Residues in contact with ASN 149 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A PHE* 3.6 18.5 - - + -
145A ASN* 3.0 18.1 + - - +
146A ASP* 3.1 11.5 + - - +
148A PHE* 1.3 76.2 - - - +
150A VAL* 1.3 59.0 + - + +
152A LYS* 3.4 6.1 + - - +
153A ALA* 3.0 29.3 + - - +
142I SER* 3.1 45.5 + - - -
143I VAL* 3.5 12.9 + - - +
146I ASP* 3.8 23.0 + - - +
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Residues in contact with VAL 150 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A TYR* 5.1 8.5 - - + +
146A ASP* 2.9 39.4 + - - +
147A ILE* 3.9 4.7 - - - +
149A ASN* 1.3 76.0 - - - +
151A ALA* 1.3 61.7 + - - +
153A ALA* 3.4 9.0 + - + +
154A SER* 3.3 21.1 + - - -
146I ASP* 5.5 5.8 - - - +
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Residues in contact with ALA 151 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A TYR* 3.6 34.0 + - + -
76A MET* 4.0 8.7 - - + -
129A PHE* 3.5 26.2 - - + -
147A ILE 3.2 16.8 + - - +
148A PHE 3.9 2.0 - - - +
150A VAL* 1.3 77.2 - - - +
152A LYS* 1.3 63.4 + - - +
154A SER 3.3 1.0 + - - -
155A ILE* 3.1 28.4 + - - +
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Residues in contact with LYS 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A ALA* 4.1 19.5 - - + +
129A PHE* 3.8 15.4 - - + +
130A GLN* 3.1 41.0 + - - +
133A PHE* 5.8 2.5 - - + -
148A PHE 3.0 18.4 + - - +
149A ASN* 3.8 8.5 - - - +
150A VAL 3.3 0.2 - - - -
151A ALA* 1.3 73.2 - - - +
153A ALA* 1.3 66.8 + - - +
155A ILE* 3.9 2.6 - - - +
156A GLU* 3.0 62.3 + - + +
79I ARG* 3.9 6.7 - - - +
141I ASP* 4.9 2.8 + - - +
142I SER* 4.8 5.8 + - - +
143I VAL* 3.5 18.6 - - + +
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Residues in contact with ALA 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A ASN 3.0 17.2 + - - +
150A VAL* 3.5 9.9 - - + +
152A LYS* 1.3 77.5 - - - +
154A SER* 1.3 60.5 + - - +
156A GLU* 4.0 3.4 - - - +
157A LYS* 3.2 22.7 + - - +
79I ARG* 4.8 2.3 + - - -
143I VAL* 3.5 32.6 - - + +
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Residues in contact with SER 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A GLU* 2.6 31.8 + - - -
72A TYR* 3.2 13.9 - - - -
150A VAL 3.3 6.4 + - - -
151A ALA 3.9 0.2 - - - -
152A LYS 3.3 0.6 - - - -
153A ALA* 1.3 77.5 - - - +
155A ILE* 1.3 67.0 + - - +
157A LYS* 3.2 12.0 + - - +
158A HIS* 3.0 30.2 + - - -
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Residues in contact with ILE 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A GLU* 4.3 9.4 - - - +
69A ILE* 3.8 28.3 - - + -
72A TYR* 4.3 6.1 - - + -
122A PHE* 3.4 54.7 - - + +
125A LEU* 4.5 6.1 - - + -
126A ALA* 4.1 14.4 - - + +
129A PHE* 4.1 14.6 - - + -
151A ALA 3.1 21.4 + - - +
152A LYS* 3.9 5.2 - - - +
154A SER* 1.3 77.1 - - - +
156A GLU* 1.3 56.0 + - - +
158A HIS* 3.2 8.8 + - + +
159A ILE* 2.9 27.2 + - + +
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Residues in contact with GLU 156 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A ALA* 4.1 20.0 - - + +
152A LYS* 3.0 50.3 + - - +
153A ALA 4.0 0.7 - - - +
155A ILE* 1.3 74.5 - - - +
157A LYS* 1.3 64.6 + - - +
159A ILE* 3.2 8.9 + - + +
160A TRP 3.0 18.4 + - - -
172A LEU* 3.9 25.6 - - + +
79I ARG* 2.6 47.8 + - - +
82I THR* 3.4 16.2 - - + +
143I VAL* 4.1 0.9 - - - +
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Residues in contact with LYS 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A ALA 3.2 14.1 + - - +
154A SER* 3.2 14.7 + - - +
156A GLU* 1.3 74.3 - - - +
158A HIS* 1.3 67.5 + - + +
160A TRP* 3.2 23.3 + - + +
161A MET* 3.0 35.4 + - + +
75I GLU* 4.5 23.4 + - - +
78I GLU* 3.3 34.9 + - + +
79I ARG* 5.3 0.4 - - - +
82I THR* 4.3 11.1 - - - +
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Residues in contact with HIS 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A LYS* 6.2 1.3 - - - -
65A TYR* 3.6 33.8 + + + +
68A GLU* 2.7 35.8 + - - -
122A PHE* 3.6 24.5 - + + -
154A SER* 3.0 28.3 + - - -
155A ILE* 3.2 11.9 + - + +
157A LYS* 1.3 76.7 - - + +
159A ILE* 1.3 61.0 + - - +
161A MET* 3.1 15.7 + - - +
162A LEU* 2.8 36.0 + - - +
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Residues in contact with ILE 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A VAL* 4.3 7.9 - - + +
122A PHE* 3.7 24.7 - - + +
123A ARG* 3.8 42.8 - - + +
126A ALA* 4.4 7.0 - - + -
155A ILE* 2.9 22.9 + - + +
156A GLU* 3.2 14.8 + - - +
158A HIS* 1.3 75.7 - - - +
160A TRP* 1.3 62.2 + - - +
162A LEU* 4.5 6.3 - - - -
163A GLN* 2.9 30.9 + - + +
170A PRO 3.8 22.0 - - - +
172A LEU* 4.0 16.8 - - + -
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Residues in contact with TRP 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A GLU 3.0 9.8 + - - +
157A LYS* 3.4 26.9 - - + +
159A ILE* 1.3 78.5 - - - +
161A MET* 1.3 75.9 + - + +
163A GLN* 3.8 1.2 - - - +
164A ALA* 2.8 37.5 + - + +
168A GLN 5.0 0.8 - - - +
170A PRO* 4.1 27.2 - - + +
78I GLU* 3.4 45.8 - - + -
81I ILE* 3.4 35.3 - - + +
82I THR* 3.5 28.5 - - + +
47K HIS 4.9 0.4 - - - -
48K TRP 4.6 7.8 + - - -
50K MET 5.4 0.6 + - - -
55K PHE* 3.9 13.1 - + - -
59K HIS* 3.5 25.1 - + - -
107K TYR* 5.9 0.4 - - - -
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Residues in contact with MET 161 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A LYS* 6.3 0.7 - - - -
65A TYR* 5.5 2.2 - - - +
157A LYS* 3.0 26.9 + - + +
158A HIS* 3.8 17.0 - - - +
160A TRP* 1.3 104.7 - - + +
162A LEU* 1.3 63.4 + - - +
164A ALA* 3.2 3.5 + - - +
165A GLU* 3.0 20.6 + - - +
78I GLU* 4.9 2.0 - - - +
55K PHE* 3.7 29.1 - - + -
56K MET* 3.7 23.5 - - + +
59K HIS* 3.5 26.0 - - + +
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Residues in contact with LEU 162 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A TRP* 3.7 29.8 - - + -
65A TYR* 3.8 13.9 - - + +
115A LEU* 4.0 29.2 - - + +
118A VAL* 3.7 26.9 - - + -
119A VAL* 3.5 23.1 - - + -
122A PHE* 3.8 20.6 - - + -
158A HIS 2.8 24.4 + - - +
159A ILE 3.9 1.8 - - - +
161A MET* 1.3 73.3 - - - +
163A GLN* 1.3 62.9 + - - +
165A GLU* 3.1 9.1 + - - +
166A LEU* 3.1 25.9 + - - +
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Residues in contact with GLN 163 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A VAL* 3.7 20.6 - - + +
123A ARG* 3.2 29.2 - - - +
159A ILE* 2.9 25.5 + - + +
160A TRP 3.8 2.2 - - - +
162A LEU* 1.3 75.7 - - - +
164A ALA* 1.3 61.9 + - - +
166A LEU* 3.0 22.4 + - - +
167A GLY 3.0 0.2 + - - -
168A GLN* 2.9 51.3 + - - +
169A ALA 3.0 31.6 + - - +
170A PRO* 3.8 8.5 - - + +
171A LYS* 3.3 7.5 - - - +
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Residues in contact with ALA 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A TRP* 2.8 26.3 + - + +
161A MET 3.4 6.3 - - - +
162A LEU 3.2 0.2 - - - -
163A GLN* 1.3 73.6 - - - +
165A GLU* 1.3 57.7 + - - +
167A GLY 3.0 5.2 + - - -
168A GLN 3.5 9.5 + - - +
50K MET 3.9 8.7 - - - +
51K ARG* 3.4 7.6 - - + -
52K GLY 2.7 31.9 + - - -
55K PHE* 3.7 30.7 - - + -
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Residues in contact with GLU 165 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A TRP* 3.6 35.0 + - + -
115A LEU* 3.9 13.0 - - + -
161A MET 3.0 12.9 + - - +
162A LEU* 3.1 10.1 + - - +
164A ALA* 1.3 75.2 - - - +
166A LEU* 1.3 58.6 + - - +
167A GLY 3.4 1.0 + - - -
52K GLY 3.2 22.8 - - - -
53K ARG* 2.8 42.0 + - - +
54K GLY* 2.9 20.3 + - - -
55K PHE* 3.2 7.8 + - + +
56K MET* 3.0 29.3 + - - +
173K EPE 4.4 2.6 + - - -
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Residues in contact with LEU 166 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A GLU* 3.7 46.6 - - + +
115A LEU* 3.9 23.3 - - + -
116A ALA* 4.0 28.0 - - + +
119A VAL* 4.3 4.3 - - + -
162A LEU 3.1 11.8 + - - +
163A GLN* 3.0 28.9 + - - +
165A GLU* 1.3 78.8 - - + +
167A GLY* 1.3 57.3 + - - +
168A GLN* 3.1 30.9 + - - +
53K ARG* 5.0 1.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il