Contacts of the helix formed by residues 141 - 166 (chain K) in PDB entry 2UX1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 141 (chain K).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152D LYS* 5.4 1.5 + - - +
22K LEU* 3.7 23.4 - - + +
25K SER* 3.7 22.6 - - - +
79K ARG* 3.1 24.2 + - - -
83K LEU* 3.4 18.2 - - - +
136K SER* 2.7 11.9 + - - +
139K GLU 3.3 0.2 - - - -
140K GLY* 1.3 76.9 - - - +
142K SER* 1.3 56.0 + - - +
143K VAL* 3.7 0.7 + - - +
144K THR* 2.6 28.6 + - - -
145K ASN* 3.0 24.4 + - - +
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Residues in contact with SER 142 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130D GLN* 4.7 8.1 + - - -
133D PHE* 3.2 42.6 - - - -
149D ASN* 2.8 31.3 + - - -
152D LYS* 4.8 5.4 + - - +
136K SER 5.2 0.2 - - - -
140K GLY 3.3 8.3 + - - -
141K ASP* 1.3 71.6 + - - +
143K VAL* 1.3 62.0 + - - +
145K ASN* 3.4 11.1 + - - +
146K ASP 3.0 22.2 + - - -
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Residues in contact with VAL 143 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149D ASN* 3.7 18.2 - - - +
152D LYS* 3.9 24.2 - - + +
153D ALA* 3.5 47.3 - - + +
156D GLU* 4.0 4.0 - - - +
79K ARG* 3.6 33.4 - - - +
141K ASP* 3.3 1.0 + - - -
142K SER* 1.3 74.1 + - - +
144K THR* 1.3 67.4 + - - +
146K ASP* 3.3 5.9 + - - +
147K ILE* 3.2 27.7 + - + +
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Residues in contact with THR 144 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25K SER* 4.6 5.6 - - - -
29K LEU* 4.0 19.3 - - + -
79K ARG* 3.2 19.1 + - - +
83K LEU* 3.8 2.6 - - - +
136K SER* 4.0 9.6 - - - -
141K ASP* 2.6 34.5 + - - +
143K VAL* 1.3 76.4 - - - +
145K ASN* 1.3 66.6 + - - +
147K ILE* 3.2 12.3 + - + +
148K PHE* 3.1 48.8 + - + -
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Residues in contact with ASN 145 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133K PHE* 2.8 60.7 + - - +
136K SER* 3.1 15.5 + - - +
137K ASP* 3.5 21.8 - - - +
141K ASP 3.0 13.1 + - - +
142K SER* 3.4 16.2 - - - +
144K THR* 1.3 77.9 - - - +
146K ASP* 1.3 57.7 + - - +
148K PHE* 3.4 3.5 + - - +
149K ASN* 3.0 27.4 + - - +
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Residues in contact with ASP 146 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146D ASP* 4.8 8.8 - - - +
149D ASN* 3.8 15.4 + - - +
150D VAL* 5.4 8.2 - - - +
146F ASP* 4.4 14.2 - - - +
142K SER 3.0 16.8 + - - +
143K VAL* 3.7 5.6 - - - +
144K THR 3.2 0.2 - - - -
145K ASN* 1.3 75.7 + - - +
147K ILE* 1.3 61.9 + - + +
149K ASN* 3.2 7.7 + - - +
150K VAL* 3.0 45.7 + - - +
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Residues in contact with ILE 147 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153D ALA* 6.3 0.7 - - + -
29K LEU* 5.3 2.2 - - + -
72K TYR* 5.7 0.7 - - + -
75K GLU* 3.7 40.8 - - + +
76K MET* 3.8 30.1 - - + -
79K ARG* 3.8 39.3 - - + -
143K VAL* 3.2 21.6 + - + +
144K THR* 3.2 9.1 + - + +
146K ASP* 1.3 77.1 - - + +
148K PHE* 1.3 64.1 + - + +
150K VAL* 3.5 4.1 + - - +
151K ALA* 3.1 22.7 + - - +
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Residues in contact with PHE 148 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28K VAL* 4.0 31.0 - - + -
29K LEU* 3.7 21.5 - - + -
32K ALA* 4.2 5.2 - - + -
76K MET* 3.9 17.0 - - + -
128K LEU 4.7 0.4 - - - -
129K PHE* 3.5 55.5 - + - +
132K GLY* 3.5 26.5 - - - -
133K PHE* 3.9 7.4 - - - +
136K SER* 4.6 0.2 - - - -
144K THR* 3.1 43.0 + - + -
145K ASN 3.8 5.6 - - - +
147K ILE* 1.3 78.3 - - + +
149K ASN* 1.3 56.7 + - - +
151K ALA* 3.3 3.7 + - - +
152K LYS* 2.9 32.3 + - - +
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Residues in contact with ASN 149 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142F SER* 2.6 51.6 + - - -
143F VAL* 3.6 8.8 + - - +
146F ASP* 3.6 23.0 + - - +
133K PHE* 3.6 16.9 - - + -
145K ASN* 3.0 17.7 + - - +
146K ASP* 3.2 11.4 + - - +
148K PHE* 1.3 76.1 - - - +
150K VAL* 1.3 58.2 + - + +
152K LYS* 3.5 5.3 + - - +
153K ALA* 3.1 28.1 + - - +
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Residues in contact with VAL 150 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146F ASP* 4.9 9.6 - - - +
72K TYR* 5.2 8.7 - - + +
146K ASP* 3.0 37.5 + - - +
147K ILE* 4.0 4.7 - - - +
149K ASN* 1.3 74.9 - - + +
151K ALA* 1.3 67.1 + - - +
153K ALA* 3.4 7.2 + - - +
154K SER* 3.3 21.4 + - - -
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Residues in contact with ALA 151 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72K TYR* 3.7 31.6 - - + -
76K MET* 4.0 8.7 - - + -
129K PHE* 3.5 27.1 - - + -
147K ILE 3.1 17.7 + - - +
148K PHE 3.7 2.0 - - - +
150K VAL* 1.3 78.1 - - - +
152K LYS* 1.3 62.4 + - - +
154K SER* 3.3 3.8 + - - -
155K ILE* 3.0 27.4 + - - +
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Residues in contact with LYS 152 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79F ARG* 6.0 0.2 - - - +
142F SER* 5.1 5.4 - - - +
143F VAL* 4.4 13.0 - - + +
126K ALA* 3.1 31.6 + - - +
127K ALA* 5.7 0.2 - - - +
129K PHE* 3.8 14.7 - - + +
130K GLN* 3.1 43.4 + - - +
133K PHE* 5.8 2.7 - - + -
148K PHE 2.9 18.4 + - - +
149K ASN* 3.8 6.5 - - - +
150K VAL 3.3 0.2 - - - -
151K ALA* 1.3 77.4 - - - +
153K ALA* 1.3 55.5 + - - +
155K ILE* 3.4 3.7 + - - +
156K GLU* 2.5 72.6 + - + +
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Residues in contact with ALA 153 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79F ARG* 4.9 2.4 + - - -
143F VAL* 3.3 35.3 - - + +
147F ILE* 6.2 0.2 - - + -
149K ASN 3.1 15.4 + - - +
150K VAL* 3.6 9.2 - - - +
151K ALA 3.3 0.4 - - - -
152K LYS* 1.3 76.3 - - - +
154K SER* 1.3 60.7 + - - +
156K GLU* 4.0 3.6 - - - +
157K LYS* 3.1 23.5 + - - +
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Residues in contact with SER 154 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68K GLU* 2.6 30.9 + - - -
72K TYR* 3.2 13.0 - - - -
150K VAL* 3.3 8.0 + - - -
151K ALA 3.8 1.6 - - - -
152K LYS 3.3 0.4 - - - -
153K ALA* 1.3 75.7 - - - +
155K ILE* 1.3 66.3 + - - +
157K LYS* 3.2 16.1 + - - +
158K HIS* 2.9 31.8 + - - -
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Residues in contact with ILE 155 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68K GLU* 4.1 13.2 - - - +
69K ILE* 4.3 17.0 - - + -
72K TYR* 4.2 9.9 - - + -
122K PHE* 3.4 49.1 - - + +
125K LEU* 4.6 5.8 - - + -
126K ALA* 4.0 14.6 - - + +
129K PHE* 4.0 18.2 - - + -
151K ALA 3.0 20.8 + - - +
152K LYS* 3.8 6.1 - - - +
154K SER* 1.3 75.2 - - - +
156K GLU* 1.3 63.6 + - - +
158K HIS* 3.1 16.0 + - + +
159K ILE* 3.0 21.9 + - + +
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Residues in contact with GLU 156 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79F ARG* 2.6 47.6 + - - +
82F THR* 3.5 10.9 - - - +
143F VAL* 4.3 3.8 - - - +
126K ALA* 4.2 16.6 - - + +
152K LYS* 2.5 57.5 + - - +
153K ALA 4.0 1.3 - - - +
155K ILE* 1.3 75.8 - - - +
157K LYS* 1.3 63.1 + - - +
159K ILE* 3.3 10.0 + - - +
160K TRP 3.1 17.7 + - - -
172K LEU* 3.7 32.1 - - + +
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Residues in contact with LYS 157 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78F GLU* 4.7 10.2 + - + +
82F THR* 4.4 11.8 - - - +
153K ALA 3.1 14.4 + - - +
154K SER* 3.5 18.8 - - - +
156K GLU* 1.3 77.2 - - - +
158K HIS* 1.3 69.3 + - - +
160K TRP* 3.2 28.8 + - + +
161K MET* 3.2 31.6 + - + +
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Residues in contact with HIS 158 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65K TYR* 3.7 35.8 + + + -
68K GLU* 2.6 36.7 + - - -
69K ILE* 6.1 0.4 - - + -
122K PHE* 3.7 23.8 - + + -
154K SER* 2.9 27.4 + - - -
155K ILE* 3.1 12.1 + - + +
157K LYS* 1.3 84.0 - - - +
159K ILE* 1.3 58.2 + - - +
161K MET* 3.2 13.4 + - - +
162K LEU* 2.8 36.2 + - + +
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Residues in contact with ILE 159 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119K VAL* 4.4 8.5 - - + +
122K PHE* 3.7 24.2 - - + +
123K ARG* 3.8 39.0 - - + +
126K ALA* 4.3 6.1 - - + -
155K ILE* 3.0 21.0 + - + +
156K GLU* 3.5 10.5 - - - +
157K LYS 3.2 0.2 - - - -
158K HIS* 1.3 75.6 - - - +
160K TRP* 1.3 63.2 + - - +
162K LEU* 4.0 6.4 - - - +
163K GLN* 2.9 31.1 + - + +
170K PRO 3.9 15.5 - - - +
172K LEU* 3.8 29.6 - - + -
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Residues in contact with TRP 160 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78F GLU* 3.4 44.9 - - + -
81F ILE* 3.4 35.6 - - + +
82F THR* 3.5 29.8 - - + +
47H HIS 4.8 0.2 - - - -
48H TRP* 4.5 9.7 + - - -
50H MET 5.4 0.4 + - - -
51H ARG* 6.2 1.6 - - - -
55H PHE* 4.0 12.7 - + - -
59H HIS* 3.6 24.5 - + - -
107H TYR* 5.8 0.2 - - - -
156K GLU 3.1 9.6 + - - +
157K LYS* 3.2 26.9 + - + +
159K ILE* 1.3 76.5 - - - +
161K MET* 1.3 75.6 + - + +
163K GLN* 3.7 1.7 - - - +
164K ALA* 2.9 37.5 + - + +
168K GLN 4.9 1.2 - - - +
170K PRO* 4.0 27.5 - - + +
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Residues in contact with MET 161 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78F GLU* 5.2 1.6 - - - +
55H PHE* 3.7 21.4 - - + -
56H MET* 3.7 31.5 - - + +
59H HIS* 3.5 35.2 - - + +
65K TYR* 5.4 1.6 - - - +
157K LYS* 3.2 25.3 + - + +
158K HIS* 3.6 15.7 - - - +
160K TRP* 1.3 97.2 - - + +
162K LEU* 1.3 65.4 + - - +
164K ALA* 3.4 2.3 + - - +
165K GLU* 3.0 22.5 + - - +
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Residues in contact with LEU 162 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58K TRP* 3.7 28.3 - - + -
65K TYR* 3.8 16.2 - - + +
115K LEU* 3.9 25.7 - - + +
118K VAL* 4.0 13.2 - - + -
119K VAL* 3.5 22.7 - - + -
122K PHE* 3.7 34.5 - - + -
158K HIS 2.8 25.8 + - - +
159K ILE* 4.0 2.7 - - - +
161K MET* 1.3 71.9 - - - +
163K GLN* 1.3 62.5 + - - +
165K GLU* 3.2 9.3 + - - +
166K LEU* 3.1 27.0 + - + +
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Residues in contact with GLN 163 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116K ALA* 5.8 0.2 - - - -
119K VAL* 3.5 21.8 - - + +
123K ARG* 3.2 29.7 - - - +
159K ILE* 2.9 24.9 + - + +
160K TRP 3.8 3.1 - - - +
162K LEU* 1.3 75.4 - - - +
164K ALA* 1.3 56.9 + - - +
166K LEU* 3.0 22.2 + - - +
167K GLY 3.1 0.2 + - - -
168K GLN* 2.8 57.6 + - - +
169K ALA 3.1 32.6 + - - +
170K PRO* 3.9 5.8 - - + +
171K LYS* 3.5 6.3 - - - +
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Residues in contact with ALA 164 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50H MET 3.8 8.5 - - - +
51H ARG* 3.4 8.5 - - + +
52H GLY 2.5 32.5 + - - -
55H PHE* 3.6 32.8 - - + -
160K TRP* 2.9 26.3 + - + +
161K MET 3.7 3.1 - - - +
162K LEU 3.3 0.2 - - - -
163K GLN* 1.3 73.6 - - - +
165K GLU* 1.3 59.7 + - - +
167K GLY 2.9 5.2 + - - -
168K GLN 3.5 9.3 + - - +
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Residues in contact with GLU 165 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52H GLY* 3.1 25.7 - - - -
53H ARG* 2.9 37.2 + - - +
54H GLY* 3.1 18.9 + - - -
55H PHE* 3.2 8.2 + - + +
56H MET* 3.0 29.5 + - - +
58K TRP* 3.5 37.2 + - + -
115K LEU* 3.8 16.4 - - + -
161K MET 3.0 13.0 + - - +
162K LEU 3.4 10.1 - - - +
164K ALA* 1.3 74.1 - - - +
166K LEU* 1.3 56.9 + - + +
167K GLY 3.2 1.2 + - - -
173K EPE 4.3 2.8 + - - -
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Residues in contact with LEU 166 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53H ARG* 5.1 2.9 - - - +
112K GLU* 3.8 39.3 - - + +
115K LEU* 3.9 24.2 - - + -
116K ALA* 3.9 28.9 - - + +
119K VAL* 4.3 3.8 - - + -
162K LEU 3.1 13.0 + - - +
163K GLN* 3.0 28.7 + - - +
165K GLU* 1.3 76.7 - - + +
167K GLY* 1.3 60.4 + - - +
168K GLN* 3.3 28.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il