Contacts of the helix formed by residues 22 - 50 (chain A) in PDB entry 2UX1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 22 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A ALA* 1.3 67.4 + - - +
24A ASP 3.2 3.4 + - - -
25A SER* 3.2 5.1 + - - -
26A LYS* 2.9 39.5 + - + +
83A LEU* 3.8 29.2 - - + +
139A GLU* 3.3 49.1 - - + +
140A GLY 5.2 0.2 - - - -
141A ASP* 3.8 25.4 - - + +
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Residues in contact with ALA 23 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU* 1.3 76.7 - - - +
24A ASP* 1.3 63.2 + - - +
26A LYS* 3.7 11.8 + - - +
27A ALA* 2.9 28.6 + - - +
139A GLU* 3.9 2.2 + - - +
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Residues in contact with ASP 24 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU 3.2 0.8 - - - -
23A ALA* 1.3 79.6 - - - +
25A SER* 1.3 67.4 + - - +
27A ALA* 3.6 6.9 - - - +
28A VAL* 2.9 26.3 + - - +
135A VAL* 3.3 25.3 - - + +
138A GLU* 5.5 1.9 - - - +
139A GLU* 3.3 16.7 + - + +
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Residues in contact with SER 25 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU* 3.2 7.6 + - - -
24A ASP* 1.3 74.7 - - - +
26A LYS* 1.3 57.9 + - - +
28A VAL* 3.1 9.5 - - - +
29A LEU* 3.0 33.1 + - - +
83A LEU* 5.0 1.6 - - - -
135A VAL* 3.3 6.6 - - - +
136A SER* 3.3 28.5 + - - +
139A GLU* 2.9 25.1 + - - -
141A ASP* 3.8 23.7 - - - +
144A THR* 4.6 7.1 - - - +
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Residues in contact with LYS 26 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22A LEU* 2.9 29.5 + - + +
23A ALA* 3.7 8.7 - - - +
25A SER* 1.3 78.1 - - - +
27A ALA* 1.3 57.1 + - - +
29A LEU* 3.3 7.7 + - - +
30A ASN* 3.0 28.8 + - - +
80A LEU* 3.6 30.1 - - + +
83A LEU* 3.5 43.1 + - + +
84A GLY* 3.6 15.6 + - - -
85A GLY* 4.1 7.4 - - - +
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Residues in contact with ALA 27 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A ALA 2.9 19.3 + - - +
24A ASP* 3.3 10.3 + - - +
26A LYS* 1.3 76.2 - - - +
28A VAL* 1.3 57.2 + - - +
30A ASN* 3.4 6.7 + - - +
31A GLN* 2.9 27.1 + - - +
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Residues in contact with VAL 28 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24A ASP 2.9 16.8 + - - +
25A SER* 3.1 26.2 - - - +
27A ALA* 1.3 73.6 - - - +
29A LEU* 1.3 60.1 + - - +
31A GLN* 3.2 4.5 + - + +
32A ALA* 2.9 28.2 + - - +
128A LEU* 3.8 23.8 - - + +
131A LYS* 4.4 6.3 - - + -
132A GLY* 3.6 39.5 - - - +
135A VAL* 4.3 9.6 - - + -
148A PHE* 3.9 12.8 - - + -
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Residues in contact with LEU 29 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25A SER 3.0 20.0 + - - +
26A LYS* 3.5 9.0 - - - +
28A VAL* 1.3 74.9 - - - +
30A ASN* 1.3 62.2 + - - +
32A ALA* 3.2 5.9 - - - +
33A VAL* 3.1 25.9 + - - +
76A MET* 3.7 37.3 - - + +
79A ARG* 3.9 17.3 - - + -
80A LEU* 3.8 31.4 - - + +
83A LEU* 4.1 12.1 - - + -
144A THR* 4.0 15.3 - - + -
147A ILE* 5.3 2.2 - - + -
148A PHE* 3.7 24.9 - - + -
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Residues in contact with ASN 30 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A LYS 3.0 16.7 + - - +
27A ALA* 3.4 7.4 + - - +
28A VAL 3.2 0.2 - - - -
29A LEU* 1.3 75.1 - - - +
31A GLN* 1.3 65.3 + - - +
33A VAL* 3.2 12.9 + - - +
34A ALA 3.2 9.7 + - - -
80A LEU* 3.5 15.1 - - + +
86A ALA 3.5 18.4 + - - +
87A PRO* 3.3 7.1 - - - +
88A PHE* 2.9 69.1 + - + +
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Residues in contact with GLN 31 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A ALA 2.9 14.8 + - - +
28A VAL* 3.5 12.3 - - + +
30A ASN* 1.3 77.8 - - - +
32A ALA* 1.3 55.3 - - - +
34A ALA* 3.3 4.5 + - - +
35A ASP* 2.8 65.2 + - - +
88A PHE* 4.2 5.7 - - - -
97A ASN* 3.1 32.8 + - - +
98A SER* 4.0 0.6 - - - +
99A GLN* 3.9 14.7 + - - +
124A TYR* 3.7 7.3 + - - +
128A LEU* 3.6 16.6 - - + -
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Residues in contact with ALA 32 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A VAL 2.9 13.4 + - - +
29A LEU* 3.2 12.6 - - - +
31A GLN* 1.3 73.8 - - - +
33A VAL* 1.3 56.9 + - - +
36A LEU* 2.8 43.9 + - + +
76A MET* 3.7 29.2 - - + -
128A LEU* 3.7 20.6 - - + +
129A PHE* 4.5 1.8 - - + -
148A PHE* 4.4 7.2 - - + -
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Residues in contact with VAL 33 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A LEU 3.1 16.8 + - - +
30A ASN* 3.2 15.9 + - - +
32A ALA* 1.3 73.9 - - - +
34A ALA* 1.3 58.8 + - - +
36A LEU* 4.1 4.2 - - - +
37A SER* 2.7 35.2 + - - +
73A LEU* 4.3 10.2 - - + +
76A MET* 4.5 2.2 - - + -
77A SER* 3.7 35.4 - - - +
80A LEU* 5.2 0.7 - - + -
87A PRO* 4.8 1.6 - - + -
88A PHE* 3.6 26.5 - - + +
94A PHE* 3.8 9.4 - - + -
48C TRP* 4.3 15.0 - - + -
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Residues in contact with ALA 34 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A ASN 3.2 3.8 + - - +
31A GLN* 3.5 8.3 - - - +
33A VAL* 1.3 79.8 - - - +
35A ASP* 1.3 61.9 + - - +
37A SER* 3.3 3.8 + - - -
38A VAL* 3.1 28.1 + - - +
88A PHE* 3.8 12.7 - - + -
94A PHE* 3.8 23.7 - - - +
97A ASN* 3.8 29.6 - - + -
98A SER* 3.9 7.2 - - - +
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Residues in contact with ASP 35 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A GLN* 2.8 30.8 + - - +
32A ALA 4.0 0.2 - - - +
34A ALA* 1.3 75.1 - - - +
36A LEU* 1.3 60.8 + - - +
38A VAL 3.3 0.5 + - - -
39A ALA* 2.8 29.2 + - - +
98A SER* 2.7 30.0 + - - -
99A GLN 2.9 15.4 + - - -
100A LEU* 3.4 7.5 + - + +
124A TYR* 2.6 42.2 + - + -
125A LEU* 4.3 5.8 - - + -
128A LEU* 3.3 17.5 - - + +
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Residues in contact with LEU 36 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ALA* 2.8 25.7 + - + +
33A VAL 4.2 1.1 - - - +
35A ASP* 1.3 74.3 - - - +
37A SER* 1.3 60.8 + - - +
39A ALA* 4.0 2.5 - - - -
40A HIS* 2.9 29.3 + - - +
69A ILE* 3.5 33.4 - - + +
72A TYR* 3.9 5.4 - - + -
73A LEU* 3.7 43.4 - - + +
76A MET* 3.9 24.2 - - - -
125A LEU* 3.9 31.4 - - + -
129A PHE* 4.1 10.8 - - + -
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Residues in contact with SER 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A VAL 2.7 22.3 + - - -
34A ALA 3.5 4.9 - - - -
36A LEU* 1.3 76.2 - - - +
38A VAL* 1.3 63.6 + - - +
40A HIS* 3.5 6.3 - - - +
41A SER* 3.3 18.9 + - - -
73A LEU* 3.6 19.5 - - - +
94A PHE* 3.4 44.6 - - - -
91C LEU* 4.6 6.1 - - - +
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Residues in contact with VAL 38 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A ALA 3.1 16.7 + - - +
35A ASP 3.8 2.0 - - - +
37A SER* 1.3 76.0 - - - +
39A ALA* 1.3 65.1 + - - +
41A SER* 3.1 8.4 + - - -
42A ILE* 3.0 23.8 + - + +
94A PHE 3.8 9.2 - - - +
95A SER* 4.8 2.7 - - - +
98A SER* 3.3 25.4 - - - +
100A LEU* 3.7 29.8 - - + +
102A GLU* 3.8 27.1 - - + +
91C LEU* 4.0 18.2 - - + -
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Residues in contact with ALA 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A ASP 2.8 18.6 + - - +
36A LEU* 3.3 7.6 + - - +
38A VAL* 1.3 77.4 - - - +
40A HIS* 1.3 60.8 + - - +
42A ILE* 3.3 5.9 + - - +
43A LEU* 2.9 31.1 + - + +
69A ILE* 4.6 6.5 - - + -
100A LEU* 4.0 3.6 - - + +
121A VAL* 3.7 29.1 - - + +
125A LEU* 3.9 18.2 - - + -
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Residues in contact with HIS 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36A LEU 2.9 17.4 + - - +
37A SER* 3.5 8.5 - - - +
39A ALA* 1.3 75.9 - - - +
41A SER* 1.3 62.8 + - - +
43A LEU* 3.2 9.4 + - - +
44A HIS 2.8 25.6 + - - -
66A MET* 3.9 23.9 + - + +
69A ILE* 4.2 6.6 - - + +
70A ASP* 2.7 41.5 + - - +
73A LEU* 5.6 2.0 - - + -
1173A ZN 2.1 37.2 - - - -
40C HIS* 6.6 0.4 - + - -
70C ASP* 5.8 4.5 - - - -
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Residues in contact with SER 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A SER 3.3 4.6 + - - -
38A VAL 3.1 7.3 + - - -
40A HIS* 1.3 87.3 - - - +
42A ILE* 1.3 54.8 + - - +
44A HIS* 3.2 6.7 + - - +
45A GLN* 2.9 27.7 + - - +
102A GLU* 2.8 27.0 + - - -
89C SER* 3.6 11.8 + - - +
90C THR* 3.8 3.6 - - - -
91C LEU* 3.7 26.4 - - - +
94C PHE* 3.9 10.1 - - - -
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Residues in contact with ILE 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A VAL* 3.0 34.9 + - + +
39A ALA* 3.7 7.0 - - - +
41A SER* 1.3 75.5 - - - +
43A LEU* 1.3 65.7 + - + +
45A GLN* 3.1 14.2 + - - +
46A VAL* 2.9 27.0 + - + +
100A LEU* 4.3 12.1 - - + -
101A LYS 4.5 2.9 - - - +
102A GLU* 4.3 14.1 - - + +
117A ARG* 4.0 42.4 - - + +
118A VAL* 5.8 2.5 - - + -
121A VAL* 3.7 34.5 - - + -
89C SER 5.5 0.2 - - - -
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Residues in contact with LEU 43 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A ALA* 2.9 23.8 + - + +
40A HIS* 3.6 3.6 - - - +
42A ILE* 1.3 78.3 - - + +
44A HIS* 1.3 57.4 + - - +
46A VAL* 3.3 6.3 + - - +
47A HIS* 3.0 26.7 + - - +
62A MET* 3.8 23.5 - - - +
65A TYR* 3.9 22.2 - - + -
66A MET* 3.8 20.9 - - + +
69A ILE* 3.9 28.7 - - + -
118A VAL* 3.7 34.5 - - + -
121A VAL* 5.8 3.8 - - + -
122A PHE* 4.2 9.6 - - + -
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Residues in contact with HIS 44 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A HIS 2.8 16.1 + - - +
41A SER* 3.6 6.7 - - - +
43A LEU* 1.3 74.3 - - - +
45A GLN* 1.3 66.3 + - - +
47A HIS* 3.2 17.1 - + - +
48A TRP* 3.0 61.3 + + + -
63A ASP* 5.5 0.2 + - - -
66A MET* 3.6 16.9 - - + +
1173A ZN 2.1 35.8 - - - -
70C ASP* 5.6 1.8 - - + -
73C LEU* 4.1 9.8 - - + +
74C ASP* 2.8 30.6 + - + -
94C PHE* 6.6 0.2 - - + -
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Residues in contact with GLN 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A SER 2.9 12.7 + - - +
42A ILE* 3.1 16.8 + - - +
44A HIS* 1.3 78.4 - - - +
46A VAL* 1.3 57.5 + - - +
48A TRP* 3.2 2.2 + - - -
49A TYR* 2.9 43.2 + - + +
102A GLU* 5.7 0.8 + - - +
103A VAL* 2.9 36.0 + - - +
104A LEU 4.4 1.4 - - - +
105A GLY* 3.5 12.3 - - - +
106A ASP 5.3 0.2 + - - -
114A GLN* 5.4 6.4 + - - +
117A ARG* 5.1 6.4 + - - -
89C SER* 3.1 47.3 + - - +
90C THR* 3.9 2.6 - - - +
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Residues in contact with VAL 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A ILE* 2.9 27.7 + - + +
43A LEU 3.6 7.4 - - - +
44A HIS 3.2 0.2 - - - -
45A GLN* 1.3 76.1 - - + +
47A HIS* 1.3 66.0 + - - +
50A MET* 3.2 33.6 + - - +
62A MET* 3.9 23.8 - - + -
114A GLN* 3.6 45.5 - - + +
115A LEU* 5.6 0.4 - - + -
117A ARG* 4.8 4.0 - - + -
118A VAL* 4.1 20.0 - - + -
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Residues in contact with HIS 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A LEU 3.0 13.5 + - - +
44A HIS* 3.2 18.8 - + + +
46A VAL* 1.3 77.5 - - - +
48A TRP* 1.3 67.7 + + - +
50A MET* 4.3 3.5 + - - +
55A PHE* 4.4 4.5 - - - -
59A HIS* 2.9 72.7 + + - +
62A MET* 3.8 14.9 - - + +
63A ASP* 3.3 26.6 + - - -
66A MET* 3.9 4.0 - - + -
74C ASP* 3.5 10.5 - - - -
78C GLU* 3.0 9.1 + - - -
1173C ZN 2.1 35.5 - - - -
160H TRP* 4.9 0.2 - - - -
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Residues in contact with TRP 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A HIS* 3.0 50.5 + + + +
45A GLN 3.8 2.7 - - - +
47A HIS* 1.3 85.8 - + - +
49A TYR* 1.3 68.0 + - + +
50A MET 3.4 3.0 + - - +
55A PHE* 5.4 0.3 - - - -
107A TYR* 3.8 8.2 - - - -
33C VAL* 4.2 5.6 - - + -
73C LEU* 3.5 24.2 - - + -
74C ASP* 2.9 20.1 + - - -
77C SER* 2.9 34.6 + - - -
78C GLU* 3.6 24.1 + - + -
81C ILE* 3.6 27.9 - - + +
87C PRO* 4.1 9.4 - - + -
88C PHE 3.5 20.6 - - - -
89C SER* 4.1 21.8 - - - -
94C PHE* 4.7 6.7 - + - -
160H TRP* 4.5 8.0 + - - -
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Residues in contact with TYR 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A GLN* 2.9 35.4 + - + +
48A TRP* 1.3 80.1 - - + +
50A MET* 1.3 66.4 + - - +
51A ARG* 3.3 2.4 + - - +
105A GLY* 3.6 21.6 + - - -
106A ASP* 3.5 20.4 - - - +
107A TYR* 3.5 63.0 - + - +
109A VAL 5.2 0.7 - - - +
114A GLN* 4.1 16.6 + - - +
86C ALA* 3.2 11.2 + - + +
87C PRO* 2.5 47.3 + - + -
89C SER* 3.4 23.8 + - - -
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Residues in contact with MET 50 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A VAL* 3.2 33.1 + - - +
47A HIS* 4.4 1.6 - - - +
48A TRP 3.4 4.2 - - - +
49A TYR* 1.3 77.9 - - - +
51A ARG* 1.3 66.2 + - - +
55A PHE* 3.4 44.5 - - + +
58A TRP* 3.7 21.1 - - - +
59A HIS* 3.3 37.5 - - + +
62A MET* 5.1 0.9 - - - -
107A TYR* 5.1 0.2 - - - -
109A VAL 5.8 0.2 - - - -
111A ILE* 3.3 26.2 - - + -
114A GLN* 4.2 22.2 - - + +
115A LEU* 5.3 3.1 - - - -
160H TRP* 5.4 0.9 + - - -
164H ALA* 3.9 1.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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