Contacts of the helix formed by residues 54 - 83 (chain I) in PDB entry 2UX1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 54 (chain I).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165D GLU* 2.9 11.8 + - - -
53G ARG* 3.8 11.9 - - - -
53I ARG* 1.3 73.4 - - - +
55I PHE* 1.3 65.5 + - - +
56I MET 3.2 3.5 + - - -
57I ILE* 3.2 3.4 + - - +
58I TRP* 3.0 33.5 + - - +
111I ILE* 4.8 3.1 - - - -
173I EPE 3.6 21.5 + - - -
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Residues in contact with PHE 55 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160D TRP* 3.8 23.6 - + - -
161D MET* 3.6 39.9 - - + -
164D ALA* 3.6 16.6 - - + +
165D GLU* 3.2 13.9 + - - +
47I HIS 4.4 3.1 - - - -
48I TRP 5.2 0.9 - - - -
50I MET* 3.4 52.0 - - + -
52I GLY 3.0 17.1 + - - +
54I GLY* 1.3 77.9 - - - +
56I MET* 1.3 67.3 + - + +
59I HIS* 2.8 71.7 + + + +
111I ILE* 4.4 0.2 - - - +
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Residues in contact with MET 56 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57D ILE* 4.2 23.4 - - + +
58D TRP* 3.1 46.0 - - + -
61D LYS* 4.1 29.2 - - + +
65D TYR* 3.8 13.9 - - - +
161D MET* 4.0 38.1 - - + +
165D GLU* 3.0 16.6 + - - +
54I GLY 3.2 0.6 - - - -
55I PHE* 1.3 83.1 - - + +
57I ILE* 1.3 56.8 + - - +
59I HIS* 6.1 0.9 - - - -
60I PRO* 3.2 24.1 - - - +
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Residues in contact with ILE 57 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57D ILE* 3.6 26.0 - - + -
54G GLY* 5.3 0.4 - - - -
56G MET* 3.8 34.5 - - + +
57G ILE* 3.8 25.4 - - + +
54I GLY* 3.2 6.1 + - - +
55I PHE 3.2 0.4 - - - -
56I MET* 1.3 78.3 - - - +
58I TRP* 1.3 78.5 + - + +
59I HIS 3.5 0.4 - - - -
60I PRO* 3.3 15.1 - - - +
61I LYS* 3.3 12.0 + - + +
165I GLU* 5.7 0.4 - - - +
173I EPE 3.2 40.1 + - - +
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Residues in contact with TRP 58 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53G ARG* 4.4 5.3 - - - +
56G MET* 3.2 34.3 - - + -
50I MET* 3.7 22.9 - - + -
54I GLY* 3.0 32.4 + - - +
57I ILE* 1.3 87.0 - - + +
59I HIS* 1.3 66.6 + - - +
61I LYS* 3.5 30.2 - - + +
62I MET* 3.0 33.4 + - + +
65I TYR* 3.9 3.8 - + - -
111I ILE* 4.6 3.8 - - + -
115I LEU* 3.6 27.0 - - + +
162I LEU* 3.5 28.0 - - + -
165I GLU* 3.4 49.6 + - + -
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Residues in contact with HIS 59 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160D TRP* 3.7 22.7 - + - -
161D MET* 3.4 31.2 - - + +
47I HIS* 2.7 80.3 + + - -
50I MET* 3.6 8.3 - - - -
55I PHE* 2.8 46.4 + + + +
56I MET* 5.0 1.6 - - - -
58I TRP* 1.3 75.4 - - - +
60I PRO* 1.4 69.4 - - + +
62I MET* 3.3 7.2 + - - +
63I ASP* 5.6 0.2 - - - -
78K GLU* 3.8 1.1 - - + -
1174K ZN 4.0 4.0 - - - -
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Residues in contact with PRO 60 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56I MET* 3.2 30.3 - - - +
57I ILE* 3.3 12.6 - - - +
59I HIS* 1.4 97.5 - - + +
61I LYS* 1.3 62.9 + - - -
63I ASP* 3.0 31.4 + - + +
64I GLU* 3.2 11.1 + - - +
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Residues in contact with LYS 61 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56G MET* 3.9 31.7 - - + +
57I ILE* 3.3 15.0 + - + +
58I TRP* 3.2 31.5 + - + +
60I PRO* 1.3 77.1 - - - +
62I MET* 1.3 57.0 + - - +
64I GLU* 2.8 42.1 + - - +
65I TYR* 3.0 58.8 + - + +
158I HIS* 6.3 0.4 - - - -
161I MET* 6.2 0.6 - - - -
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Residues in contact with MET 62 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43I LEU* 3.8 29.8 - - - +
46I VAL* 3.8 20.6 - - + -
47I HIS* 3.8 36.8 - - + +
50I MET* 4.6 2.7 - - + -
58I TRP* 3.0 41.3 + - + +
59I HIS 3.5 7.4 - - - +
60I PRO 3.2 0.2 - - - -
61I LYS* 1.3 74.8 - - - +
63I ASP* 1.3 53.6 + - - +
65I TYR* 3.3 25.6 + - + +
66I MET* 2.8 39.8 + - + +
115I LEU* 4.2 16.2 - - + -
118I VAL* 4.1 6.7 - - + -
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Residues in contact with ASP 63 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44I HIS* 5.4 0.3 + - - -
47I HIS* 3.4 31.8 + - - -
59I HIS* 3.7 0.4 + - - -
60I PRO* 3.0 21.2 + - + +
62I MET* 1.3 78.6 - - - +
64I GLU* 1.3 55.8 + - + +
66I MET* 3.4 15.0 + - - +
67I GLU* 3.0 32.2 + - - +
74K ASP* 5.0 3.9 - - - +
1174K ZN 4.3 1.9 - - - -
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Residues in contact with GLU 64 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60I PRO* 3.2 9.8 + - - +
61I LYS* 2.8 50.4 + - + +
63I ASP* 1.3 78.7 - - + +
65I TYR* 1.3 61.2 + - + +
67I GLU* 3.5 7.0 + - - +
68I GLU* 3.1 28.9 + - - +
158I HIS* 6.0 1.0 - - - -
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Residues in contact with TYR 65 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56G MET* 4.3 7.3 - - - +
43I LEU* 3.8 18.8 - - + -
58I TRP* 3.9 5.0 - - - -
61I LYS* 3.0 46.4 + - + +
62I MET* 3.6 33.0 - - + +
64I GLU* 1.3 77.0 - - + +
66I MET* 1.3 59.8 + - - +
68I GLU* 3.3 6.2 + - - +
69I ILE* 2.8 34.6 + - - +
118I VAL* 4.3 1.6 - - + -
122I PHE* 3.9 24.9 - + + -
158I HIS* 3.6 42.4 + + - +
161I MET* 5.4 0.5 - - - +
162I LEU* 3.7 31.8 - - + +
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Residues in contact with MET 66 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40I HIS* 3.9 24.0 - - + +
43I LEU* 3.6 21.8 - - + +
44I HIS* 3.4 44.6 - - + +
47I HIS* 3.9 24.2 - - + -
62I MET* 2.8 39.6 + - + +
63I ASP* 3.7 21.3 - - - +
64I GLU 3.4 0.2 - - - -
65I TYR* 1.3 72.0 - - - +
67I GLU* 1.3 58.5 + - - +
69I ILE* 3.3 2.8 + - - +
70I ASP* 2.8 38.3 + - - +
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Residues in contact with GLU 67 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63I ASP 3.0 19.0 + - - +
64I GLU* 3.6 7.4 - - - +
66I MET* 1.3 77.0 - - - +
68I GLU* 1.3 62.2 + - - +
70I ASP* 3.3 13.1 + - - +
71I GLY* 3.1 19.2 + - - -
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Residues in contact with GLU 68 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64I GLU 3.1 17.7 + - - +
65I TYR* 3.3 6.9 + - - +
67I GLU* 1.3 75.0 - - - +
69I ILE* 1.3 65.3 + - + +
71I GLY* 3.0 12.6 + - - -
72I TYR* 2.7 51.7 + - + +
154I SER* 2.7 20.6 + - - -
155I ILE* 4.0 4.7 - - - +
158I HIS* 2.7 34.0 + - - -
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Residues in contact with ILE 69 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36I LEU* 3.5 37.2 - - + +
39I ALA* 4.7 2.0 - - + -
40I HIS* 4.1 17.7 - - + +
43I LEU* 3.6 19.3 - - + -
65I TYR 2.8 27.1 + - - +
66I MET* 3.5 5.8 - - - +
68I GLU* 1.3 73.2 - - + +
70I ASP* 1.3 60.4 + - - +
72I TYR* 3.3 15.2 + - + +
73I LEU* 3.0 25.6 + - + +
122I PHE* 4.4 7.4 - - + -
125I LEU* 4.3 17.3 - - + -
155I ILE* 4.1 26.5 - - + -
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Residues in contact with ASP 70 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40I HIS* 2.6 44.4 + - - +
66I MET* 2.8 26.6 + - - +
67I GLU* 3.7 15.0 + - - +
69I ILE* 1.3 74.7 - - - +
71I GLY* 1.3 58.0 + - - +
73I LEU* 3.3 15.0 + - + +
74I ASP* 3.0 28.6 + - - +
40K HIS* 6.2 2.1 - - - -
44K HIS* 5.6 1.6 - - - -
70K ASP* 5.2 4.9 - - - +
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Residues in contact with GLY 71 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67I GLU 3.1 10.3 + - - -
68I GLU* 3.0 8.9 + - - -
70I ASP* 1.3 73.4 - - - +
72I TYR* 1.3 64.9 + - - +
74I ASP* 3.5 4.8 + - - +
75I GLU* 3.1 25.2 + - - +
----------------------------------------------------------
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Residues in contact with TYR 72 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36I LEU* 3.8 14.8 - - + -
68I GLU* 2.7 54.7 + - + +
69I ILE* 3.5 17.5 - - + +
71I GLY* 1.3 73.1 - - - +
73I LEU* 1.3 60.0 + - - +
75I GLU* 3.8 15.0 - - - +
76I MET* 2.9 44.6 + - + +
129I PHE* 4.6 7.4 - + - -
147I ILE 5.7 0.2 - - - -
150I VAL* 4.2 8.4 + - + +
151I ALA* 3.6 36.8 - - + -
154I SER* 3.3 16.8 - - - -
155I ILE* 4.1 14.8 - - + -
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Residues in contact with LEU 73 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33I VAL* 3.7 40.2 - - + +
36I LEU* 3.8 16.4 - - + +
37I SER* 3.6 33.7 - - - +
40I HIS* 5.5 1.8 - - + -
69I ILE* 3.0 13.2 + - + +
70I ASP* 3.4 20.9 - - - +
71I GLY 3.2 0.2 - - - -
72I TYR* 1.3 76.8 - - - +
74I ASP* 1.3 60.5 + - - +
76I MET* 4.1 1.1 - - - +
77I SER* 2.9 27.0 + - - -
44K HIS* 4.8 9.4 - - + +
48K TRP* 4.0 16.4 - - + -
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Residues in contact with ASP 74 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70I ASP 3.0 15.6 + - - +
71I GLY* 4.1 4.7 - - - +
72I TYR 3.4 0.2 - - - -
73I LEU* 1.3 76.6 - - - +
75I GLU* 1.3 58.4 + - - +
77I SER* 2.8 17.0 + - - -
78I GLU* 2.8 35.2 + - - +
1174I ZN 1.9 38.1 - - - -
44K HIS* 2.9 27.1 + - + +
47K HIS* 4.2 0.2 - - - -
48K TRP* 3.1 6.4 + - - +
63K ASP* 4.8 4.0 - - - +
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Residues in contact with GLU 75 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A LYS* 4.5 22.9 + - - +
71I GLY 3.1 17.4 + - - +
72I TYR* 3.8 19.3 - - - +
74I ASP* 1.3 76.3 - - - +
76I MET* 1.3 56.9 + - - +
78I GLU* 3.5 1.4 + - - +
79I ARG* 2.9 29.3 + - - +
147I ILE* 3.8 40.9 - - + +
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Residues in contact with MET 76 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29I LEU* 3.5 34.2 - - + +
32I ALA* 3.7 26.0 - - + -
33I VAL* 4.5 4.9 - - + -
36I LEU* 3.8 9.0 - - + -
72I TYR* 2.9 30.4 + - + +
73I LEU* 4.2 2.0 - - - +
75I GLU* 1.3 73.6 - - - +
77I SER* 1.3 65.0 + - - +
79I ARG* 3.4 1.2 + - - -
80I LEU* 3.0 21.0 + - - +
129I PHE* 3.7 22.0 - - + -
147I ILE* 3.7 29.6 - - + +
148I PHE* 4.1 14.1 - - + -
151I ALA* 4.0 18.8 - - + -
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Residues in contact with SER 77 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33I VAL* 3.8 19.8 - - - +
73I LEU 2.9 11.1 + - - -
74I ASP 2.8 20.8 + - - -
76I MET* 1.3 74.8 - - - +
78I GLU* 1.3 56.8 + - - +
80I LEU* 3.2 8.8 + - - +
81I ILE* 3.0 30.2 + - - +
87I PRO* 4.1 9.2 - - - +
48K TRP* 2.9 46.1 - - - -
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Residues in contact with GLU 78 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A LYS* 3.3 25.6 + - - +
160A TRP* 3.4 34.9 - - + -
161A MET* 4.9 1.9 - - - +
74I ASP* 2.8 24.2 + - - +
75I GLU 4.0 2.7 - - - +
77I SER* 1.3 79.1 + - - +
79I ARG* 1.3 54.0 + - - +
81I ILE* 3.4 7.1 + - + +
82I THR* 2.7 37.2 + - - -
1174I ZN 2.0 37.5 - - - -
47K HIS* 3.1 9.4 + - - -
48K TRP* 3.6 14.5 - - + -
59K HIS* 3.9 1.9 + - - -
----------------------------------------------------------
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Residues in contact with ARG 79 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A LYS* 3.9 5.5 - - - +
153A ALA 4.8 3.0 + - - -
156A GLU* 2.6 43.0 + - - +
157A LYS* 5.3 0.8 - - - +
29I LEU* 4.2 8.7 - - + -
75I GLU 2.9 18.3 + - - +
76I MET 3.7 4.7 - - - +
78I GLU* 1.3 73.7 - - - +
80I LEU* 1.3 60.6 + - - +
82I THR* 3.0 15.5 + - - +
83I LEU* 2.8 55.2 + - + +
141I ASP* 3.0 22.0 + - - -
143I VAL* 3.6 29.3 - - - +
144I THR* 3.5 24.0 + - - +
147I ILE* 3.7 20.0 - - + -
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Residues in contact with LEU 80 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26I LYS* 3.5 40.6 - - + +
29I LEU* 3.8 14.0 - - + +
30I ASN* 3.5 43.7 - - + +
33I VAL* 5.1 1.6 - - + -
76I MET 3.0 14.0 + - - +
77I SER 3.3 7.4 - - - +
79I ARG* 1.3 75.9 - - - +
81I ILE* 1.3 60.3 + - - +
83I LEU* 3.2 9.3 + - - -
84I GLY 3.2 0.3 + - - -
85I GLY* 2.8 41.2 + - - -
86I ALA 4.1 1.1 - - - +
87I PRO* 3.6 23.6 - - + -
----------------------------------------------------------
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Residues in contact with ILE 81 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A TRP* 3.4 32.3 - - + +
170A PRO* 3.3 14.0 - - + +
77I SER 3.0 20.0 + - - +
78I GLU* 3.5 15.3 - - + +
80I LEU* 1.3 73.5 - - - +
82I THR* 1.3 57.8 + - - +
84I GLY* 3.0 18.4 + - - -
85I GLY 4.0 3.4 - - - +
87I PRO* 3.7 9.9 - - + -
48K TRP* 3.3 52.9 - - + +
51K ARG* 5.8 0.4 - - - +
107K TYR* 3.5 34.2 + - + +
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Residues in contact with THR 82 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A GLU 3.4 29.6 - - - +
157A LYS* 4.3 5.0 - - - +
160A TRP* 3.5 23.5 - - + +
170A PRO* 3.6 13.8 - - + +
172A LEU* 3.3 35.1 + - + +
78I GLU 2.7 18.6 + - - -
79I ARG* 3.3 26.4 - - - +
81I ILE* 1.3 78.1 - - - +
83I LEU* 1.3 59.9 + - - +
84I GLY 3.2 1.4 + - - -
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Residues in contact with LEU 83 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172A LEU* 4.5 12.6 - - + -
22I LEU* 5.1 7.0 - - + -
25I SER* 4.8 4.3 - - - -
26I LYS* 2.8 46.1 + - + -
29I LEU* 3.7 28.9 - - + -
79I ARG* 2.8 47.7 + - - +
80I LEU 3.2 5.1 + - - +
82I THR* 1.3 73.7 - - - +
84I GLY* 1.3 56.1 + - - +
85I GLY 3.5 0.4 - - - -
141I ASP* 3.3 23.8 - - - +
144I THR* 3.8 2.7 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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