Contacts of the helix formed by residues 318 - 386 (chain B) in PDB entry 2VDE
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 318 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315B TYR* 4.1 11.1 - - - -
316B GLN 3.4 1.0 - - - -
317B GLY* 1.3 75.3 - - - +
319B MET* 1.3 62.4 + - - +
320B VAL 3.5 2.5 - - - -
321B ASN* 3.6 9.8 + - - +
322B SER* 3.3 23.0 + - - -
1453B CL 3.4 14.1 - - - +
54C ASN* 5.4 4.2 - - - +
58C SER* 4.5 0.9 - - - -
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Residues in contact with MET 319 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316B GLN* 3.4 42.6 - - + +
317B GLY 3.1 2.2 - - - -
318B GLY* 1.3 75.3 - - - +
320B VAL* 1.3 68.4 + - - +
321B ASN 3.2 0.5 + - - -
322B SER* 3.4 5.6 + - - -
323B GLN* 3.3 50.0 + - - +
1453B CL 3.6 1.4 - - - +
55C GLU* 4.0 12.7 - - + +
58C SER* 3.2 29.8 - - - +
59C PRO* 5.3 8.3 - - + -
63C GLN* 4.7 8.7 - - - +
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Residues in contact with VAL 320 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
262B ALA 3.7 21.3 - - - +
265B GLY* 3.8 25.6 - - - +
266B HIS* 3.5 33.4 - - + +
316B GLN* 3.3 29.6 - - + +
318B GLY 3.5 0.4 - - - -
319B MET* 1.3 77.9 - - + +
321B ASN* 1.3 57.4 + - - +
323B GLN* 3.7 14.6 + - - +
324B VAL* 3.1 25.1 + - + +
1453B CL 3.7 10.1 - - + +
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Residues in contact with ASN 321 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266B HIS* 4.1 17.3 + - - -
318B GLY* 3.9 9.9 - - - +
319B MET 3.2 0.8 - - - -
320B VAL* 1.3 75.1 - - - +
322B SER* 1.3 66.5 + - - +
323B GLN 3.2 1.1 - - - -
324B VAL* 2.9 9.6 + - - +
325B LYS* 2.7 37.2 + - + +
1453B CL 3.0 25.1 - - - +
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Residues in contact with SER 322 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318B GLY 3.3 9.9 + - - -
319B MET 3.6 9.2 - - - -
321B ASN* 1.3 75.5 - - - +
323B GLN* 1.3 51.6 + - - +
325B LYS* 3.0 7.7 + - - +
326B GLN* 2.6 51.7 + - - +
51C GLU* 3.0 23.1 + - - +
54C ASN* 3.1 28.9 + - - +
55C GLU* 3.3 11.8 + - - -
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Residues in contact with GLN 323 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
262B ALA* 3.5 18.2 - - + +
265B GLY* 6.0 0.3 - - - -
319B MET* 3.3 36.7 + - - +
320B VAL* 3.7 19.0 - - - +
321B ASN 3.2 0.4 - - - -
322B SER* 1.3 72.3 - - - +
324B VAL* 1.3 61.1 + - - +
326B GLN* 3.7 10.4 - - - +
327B ALA* 2.9 30.1 + - - +
55C GLU* 3.4 36.5 + - - +
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Residues in contact with VAL 324 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B ILE* 4.8 2.1 - - + +
262B ALA* 4.0 5.6 - - - -
263B GLN* 3.7 50.9 - - + +
266B HIS* 4.4 9.4 - - - +
320B VAL 3.1 18.2 + - - +
321B ASN* 2.9 11.8 + - - +
323B GLN* 1.3 75.2 - - - +
325B LYS* 1.3 62.4 + - + +
327B ALA* 3.8 2.4 - - - +
328B GLN* 2.9 50.7 + - + +
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Residues in contact with LYS 325 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321B ASN* 2.7 27.3 + - + +
322B SER* 3.3 6.5 - - - +
324B VAL* 1.3 73.2 - - + +
326B GLN* 1.3 59.2 + - - +
328B GLN* 3.1 17.0 + - - +
329B TYR* 2.8 33.7 + - + +
51C GLU* 3.2 38.9 + - + +
54C ASN* 5.2 4.2 - - - +
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Residues in contact with GLN 326 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322B SER* 2.6 43.0 + - - +
323B GLN* 3.4 7.5 - - - +
325B LYS* 1.3 73.2 - - - +
327B ALA* 1.3 53.3 + - - +
329B TYR* 3.0 9.8 + - - +
330B ASN* 2.8 36.6 + - - +
48C ALA* 3.8 15.4 - - + +
51C GLU* 3.7 18.6 - - + -
52C LYS* 3.0 50.9 - - - +
55C GLU* 3.4 14.6 + - - +
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Residues in contact with ALA 327 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
255B ALA 4.1 4.2 - - - +
258B GLN* 3.8 13.0 - - + +
259B ILE* 3.3 40.1 - - + +
262B ALA* 4.0 4.3 - - + -
323B GLN 2.9 20.1 + - - +
324B VAL 3.8 3.4 - - - +
326B GLN* 1.3 76.4 - - - +
328B GLN* 1.3 56.8 + - - +
330B ASN* 3.7 7.8 + - - +
331B PHE* 3.1 19.8 + - - +
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Residues in contact with GLN 328 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B ILE* 3.7 27.4 - - + +
263B GLN* 4.8 3.8 - - - +
324B VAL* 2.9 38.6 + - - +
325B LYS* 3.1 16.4 + - - +
326B GLN 3.0 0.4 - - - -
327B ALA* 1.3 75.6 - - - +
329B TYR* 1.3 61.4 + - + +
330B ASN 3.2 0.2 - - - -
331B PHE* 2.9 17.0 + - - +
332B VAL* 3.0 20.2 + - + +
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Residues in contact with TYR 329 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325B LYS* 2.8 18.3 + - + -
326B GLN 3.6 5.8 - - - +
328B GLN* 1.3 73.2 - - + +
330B ASN* 1.3 58.1 + - - +
332B VAL* 3.5 11.8 + - + +
333B GLY 3.1 21.5 + - - -
44C ALA* 3.4 22.0 - - + +
47C ASP* 3.3 54.1 - - + +
48C ALA* 3.6 13.9 - - + -
51C GLU* 3.6 25.1 - - + -
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Residues in contact with ASN 330 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
255B ALA* 3.9 15.2 - - - +
258B GLN* 4.8 6.0 - - - +
326B GLN 2.8 19.8 + - - +
327B ALA* 3.8 9.2 - - - +
329B TYR* 1.3 72.6 - - - +
331B PHE* 1.3 57.6 + - - +
333B GLY* 3.6 2.4 + - - +
334B ALA* 3.0 25.3 + - - +
44C ALA 5.3 1.8 - - - -
45C ASP* 5.6 4.3 + - - -
48C ALA* 4.8 6.9 - - + +
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Residues in contact with PHE 331 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
252B GLN* 3.4 36.8 - - + -
255B ALA* 3.9 7.6 - - + -
256B ARG* 3.5 45.8 - - + -
259B ILE* 3.8 15.5 - - + -
327B ALA 3.1 14.5 + - - +
328B GLN 2.9 11.0 + - - +
330B ASN* 1.3 73.8 - - - +
332B VAL* 1.3 60.7 + - + +
334B ALA* 3.0 2.9 + - - +
335B SER* 2.7 54.4 + - - -
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Residues in contact with VAL 332 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328B GLN 3.0 16.9 + - - +
329B TYR* 3.7 17.5 - - + +
331B PHE* 1.3 80.2 - - + +
333B GLY* 1.3 51.9 + - - +
335B SER* 3.1 9.9 + - - -
336B GLU* 2.7 45.8 + - + +
40C ARG* 5.7 0.7 - - + +
44C ALA* 4.2 12.3 - - + -
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Residues in contact with GLY 333 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329B TYR 3.1 12.2 + - - -
330B ASN* 3.8 3.6 - - - -
331B PHE 3.1 0.2 - - - -
332B VAL* 1.3 74.3 - - - +
334B ALA* 1.3 59.4 + - - +
336B GLU* 3.1 5.3 + - - +
337B GLN* 3.0 32.9 + - - +
41C LYS* 3.4 23.9 - - - +
44C ALA* 3.8 13.2 - - - +
45C ASP* 5.6 1.6 - - - -
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Residues in contact with ALA 334 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248B ALA 4.5 1.7 - - - +
251B SER* 4.2 4.9 + - - +
252B GLN* 3.5 27.7 + - + +
255B ALA* 3.5 23.3 - - + -
330B ASN* 3.0 18.9 + - - +
331B PHE 3.0 5.4 + - - +
333B GLY* 1.3 75.0 - - - +
335B SER* 1.3 59.2 + - - +
337B GLN* 3.8 20.9 - - - +
338B LEU* 3.6 14.2 + - - +
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Residues in contact with SER 335 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
252B GLN* 2.8 26.0 + - - +
331B PHE* 2.7 32.7 + - - -
332B VAL* 3.2 13.0 - - - -
334B ALA* 1.3 76.5 - - - +
336B GLU* 1.3 68.0 + - - +
338B LEU* 3.3 14.8 + - - +
339B GLU* 3.6 8.8 + - - +
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Residues in contact with GLU 336 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332B VAL* 2.7 30.7 + - + +
333B GLY 3.1 8.9 + - - +
335B SER* 1.3 72.8 - - - +
337B GLN* 1.3 57.5 + - - +
339B GLU* 2.8 31.3 + - - +
340B SER* 3.2 8.7 + - - -
37C PRO* 3.4 28.8 - - - +
40C ARG* 3.3 57.1 + - + +
41C LYS* 3.6 24.9 - - + +
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Residues in contact with GLN 337 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248B ALA* 4.1 5.9 - - + +
251B SER* 5.3 7.8 + - - +
333B GLY 3.0 11.4 + - - +
334B ALA* 3.8 24.3 - - - +
336B GLU* 1.3 76.9 - - - +
338B LEU* 1.3 57.3 + - - +
339B GLU 3.5 0.2 - - - -
340B SER* 3.7 17.1 - - - +
341B ALA* 3.3 21.3 + - - +
37C PRO 4.4 0.4 + - - -
41C LYS* 3.4 36.6 - - + +
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Residues in contact with LEU 338 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245B LEU* 3.8 13.5 - - + -
248B ALA* 3.5 33.2 - - - +
249B ARG* 3.7 22.9 - - + +
252B GLN* 3.5 28.3 - - - +
334B ALA 3.6 12.9 + - - +
335B SER 3.3 10.7 + - - +
336B GLU 2.8 1.2 + - - -
337B GLN* 1.3 76.2 - - - +
339B GLU* 1.3 63.1 + - + +
340B SER 3.3 0.2 - - - -
341B ALA* 3.5 1.0 + - - +
342B HIS* 3.0 26.3 + - + +
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Residues in contact with GLU 339 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335B SER 3.6 6.7 + - - +
336B GLU* 2.8 13.4 + - - +
338B LEU* 1.3 78.6 - - + +
340B SER* 1.3 54.0 + - - +
342B HIS* 3.2 15.6 + - - +
343B ARG* 2.7 54.7 + - - +
37C PRO* 4.1 15.3 - - + -
40C ARG* 6.2 2.0 - - - +
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Residues in contact with SER 340 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
336B GLU 3.2 3.6 + - - -
337B GLN* 3.7 17.3 - - - -
339B GLU* 1.3 78.3 - - - +
341B ALA* 1.3 57.2 + - - +
343B ARG* 3.4 6.5 + - - +
344B SER* 2.9 29.4 + - - -
37C PRO* 2.9 29.0 + - - +
38C GLU* 2.9 30.6 + - - +
206C GLN* 5.2 0.7 + - - -
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Residues in contact with ALA 341 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
244B SER* 4.6 10.3 + - - +
245B LEU* 4.2 6.5 - - + -
248B ALA* 3.6 24.5 - - + -
337B GLN 3.3 16.4 + - - +
338B LEU 3.7 3.4 - - - +
339B GLU 3.2 0.4 - - - -
340B SER* 1.3 76.5 - - - +
342B HIS* 1.3 66.1 + - - +
344B SER* 3.2 10.0 + - - -
345B VAL* 2.9 26.6 + - - +
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Residues in contact with HIS 342 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239B GLU* 2.6 30.6 + - + -
245B LEU* 4.0 28.4 - - + +
249B ARG* 5.6 4.7 - - - -
338B LEU* 3.0 15.8 + - + +
339B GLU* 3.2 22.3 + - - +
341B ALA* 1.3 75.8 - - - +
343B ARG* 1.3 58.1 + - - +
345B VAL* 2.8 22.7 + - + +
346B VAL* 3.0 33.7 + - + +
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Residues in contact with ARG 343 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339B GLU* 2.7 35.0 + - - +
340B SER* 3.6 6.3 - - - +
342B HIS* 1.3 76.3 + - - +
344B SER* 1.3 62.7 + - - +
346B VAL* 3.1 27.8 - - + +
347B GLN* 3.2 12.3 + - - +
35C SER* 2.7 40.0 + - - -
36C ASN* 4.6 1.0 - - - +
37C PRO* 3.3 29.6 - - - +
205C ARG 5.0 3.1 - - - +
206C GLN* 2.9 48.1 + - + +
207C ILE 4.7 0.4 - - - -
208C THR 3.5 17.4 + - - +
209C GLY* 4.1 13.8 + - - -
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Residues in contact with SER 344 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
244B SER* 5.7 2.9 - - - -
340B SER 2.9 16.3 + - - -
341B ALA* 3.2 14.1 - - - -
343B ARG* 1.3 76.4 - - - +
345B VAL* 1.3 62.5 + - - +
347B GLN 3.3 2.3 + - - -
348B THR* 2.8 30.9 + - - -
206C GLN* 3.6 17.1 + - - +
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Residues in contact with VAL 345 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235B LEU* 5.9 1.6 - - + +
238B ALA* 3.4 33.4 - - + +
239B GLU* 5.2 4.7 - - + -
242B ASN* 3.5 27.6 - - - +
244B SER* 4.2 8.3 - - - +
245B LEU* 3.8 24.5 - - + -
341B ALA 2.9 17.1 + - - +
342B HIS* 2.8 16.9 + - + +
344B SER* 1.3 72.2 - - - +
346B VAL* 1.3 63.4 + - + +
348B THR* 3.3 5.1 + - - -
349B VAL* 3.0 29.1 + - + +
425B ALA* 4.7 1.5 - - + +
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Residues in contact with VAL 346 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235B LEU* 3.8 21.5 - - + -
239B GLU* 5.1 0.7 - - - +
342B HIS* 3.0 40.0 + - + +
343B ARG* 3.1 22.0 - - + +
345B VAL* 1.3 77.5 - - + +
347B GLN* 1.3 85.2 + - + +
348B THR 2.9 1.0 + - - -
349B VAL* 3.2 8.5 - - - +
350B ARG* 2.8 36.1 + - + +
202C GLU* 5.8 0.2 - - - +
205C ARG* 4.9 3.1 - - + +
211C TYR* 5.0 13.2 - - - +
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Residues in contact with GLN 347 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343B ARG* 3.2 21.2 + - - +
344B SER 3.3 2.0 + - - -
346B VAL* 1.3 85.6 - - + +
348B THR* 1.3 63.2 + - - +
350B ARG* 4.6 0.4 - - - -
351B SER* 3.4 20.7 - - - +
202C GLU* 3.0 57.2 - - + +
205C ARG* 2.8 46.0 + - + +
206C GLN* 3.0 31.2 + - - +
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Residues in contact with THR 348 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344B SER* 2.8 22.8 + - - -
345B VAL* 3.8 5.6 - - - -
346B VAL 2.9 0.6 + - - -
347B GLN* 1.3 77.8 + - - +
349B VAL* 1.3 64.4 + - - +
351B SER* 4.0 4.9 - - - -
352B SER* 2.8 33.9 + - - -
421B ASN 5.3 2.7 - - - +
425B ALA* 3.9 21.9 - - + +
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Residues in contact with VAL 349 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231B VAL* 5.7 1.6 - - - +
234B LEU* 4.6 11.8 - - + +
235B LEU* 3.8 30.5 - - + +
238B ALA* 3.7 23.6 - - + -
345B VAL* 3.0 22.3 + - + +
346B VAL* 3.2 15.3 - - - +
348B THR* 1.3 74.0 - - - +
350B ARG* 1.3 59.1 + - - +
352B SER* 3.7 2.4 - - - -
353B PHE* 2.8 31.4 + - - +
422B ILE* 5.2 4.5 - - + +
425B ALA* 3.5 24.5 - - + -
426B LEU* 4.3 9.9 - - + -
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Residues in contact with ARG 350 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231B VAL* 3.7 30.3 - - + +
232B ASN* 5.2 6.1 + - - +
235B LEU* 4.0 29.6 - - + +
346B VAL* 2.8 25.4 + - - +
347B GLN* 4.6 0.4 - - - -
349B VAL* 1.3 71.0 - - - +
351B SER* 1.3 63.1 + - - +
353B PHE* 3.2 5.1 + - - +
354B ASN* 3.0 34.6 + - - +
202C GLU* 3.1 29.2 - - + +
205C ARG* 3.9 10.7 - - - +
211C TYR* 2.4 32.1 + - - -
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Residues in contact with SER 351 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
347B GLN* 3.4 27.0 - - - +
348B THR* 4.0 6.0 - - - +
349B VAL 3.4 0.2 - - - -
350B ARG* 1.3 78.3 - - - +
352B SER* 1.3 56.4 + - - +
354B ASN* 3.5 3.0 + - - +
355B ASN* 3.1 42.0 + - - +
199C ASN* 3.8 21.0 + - - +
202C GLU* 4.8 8.8 - - - +
203C GLN* 5.9 0.9 + - - -
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Residues in contact with SER 352 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348B THR* 2.8 25.4 + - - -
349B VAL* 4.1 2.5 - - - -
351B SER* 1.3 73.8 + - - +
353B PHE* 1.3 59.4 + - - +
355B ASN* 3.8 12.0 - - - +
356B ILE* 3.2 25.5 + - - +
418B ASN* 3.8 3.3 + - - +
421B ASN* 3.5 19.1 + - - +
422B ILE* 3.3 40.2 + - - +
425B ALA* 5.4 0.2 - - - -
----------------------------------------------------------
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Residues in contact with PHE 353 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227B LYS* 5.6 6.5 - - + -
228B PRO* 3.7 30.7 - - + -
229B GLN 4.0 14.6 - - - -
230B PRO* 4.6 3.1 - - + -
231B VAL* 3.7 42.6 - - + -
234B LEU* 4.6 11.4 - - + -
349B VAL 2.8 19.1 + - - +
350B ARG* 3.2 4.9 + - - +
352B SER* 1.3 73.2 - - - +
354B ASN* 1.3 81.1 + - - +
355B ASN 3.1 1.1 - - - -
356B ILE* 3.0 20.3 + - - +
357B ASN* 3.0 33.5 + - - -
422B ILE* 4.5 2.9 - - - +
----------------------------------------------------------
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Residues in contact with ASN 354 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350B ARG* 3.0 17.1 + - - +
351B SER 3.7 0.2 - - - +
353B PHE* 1.3 86.9 - - - +
355B ASN* 1.3 57.0 + - - +
357B ASN* 3.1 11.7 + - - +
358B ALA* 2.9 25.8 + - - +
195C ASN* 3.2 13.9 - - - +
198C ASP* 3.2 41.4 + - + +
199C ASN* 3.3 21.0 + - - +
202C GLU* 4.4 9.1 - - - +
----------------------------------------------------------
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Residues in contact with ASN 355 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351B SER* 3.1 29.2 + - - +
352B SER* 3.8 10.6 - - - +
353B PHE 3.1 0.2 - - - -
354B ASN* 1.3 77.2 - - - +
356B ILE* 1.3 56.8 + - - +
358B ALA* 4.0 1.1 - - - +
359B SER* 3.0 22.5 + - - -
418B ASN* 3.0 29.3 + - - +
421B ASN* 5.8 4.0 - - - +
195C ASN* 3.3 14.7 + - - +
199C ASN* 2.8 27.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE 356 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226B ASP 5.8 1.6 - - - +
228B PRO* 3.6 33.2 - - + -
352B SER 3.2 8.5 + - - +
353B PHE* 3.0 17.3 + - - +
355B ASN* 1.3 74.3 - - - +
357B ASN* 1.3 63.1 + - - +
359B SER* 3.6 3.8 - - - -
360B ILE* 3.4 29.9 + - + +
415B TYR* 4.4 15.3 - - + -
418B ASN* 3.8 13.2 - - + +
419B GLN* 3.5 46.9 - - + +
422B ILE* 3.6 20.9 - - + -
----------------------------------------------------------
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Residues in contact with ASN 357 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227B LYS* 4.0 19.9 - - - +
228B PRO* 4.0 20.3 - - - +
353B PHE* 3.0 43.4 + - - +
354B ASN* 3.3 12.5 + - - +
356B ILE* 1.3 74.6 - - - +
358B ALA* 1.3 61.0 + - - +
359B SER 3.0 1.6 + - - -
360B ILE* 3.1 6.4 + - - +
361B SER* 2.8 32.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 358 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354B ASN 2.9 9.6 + - - +
355B ASN* 4.2 2.9 - - - +
357B ASN* 1.3 72.4 - - - +
359B SER* 1.3 52.0 + - - +
361B SER* 4.0 3.6 - - - -
362B SER* 2.7 37.4 + - - -
191C LEU* 3.2 18.3 - - + +
192C THR* 5.7 2.0 - - + -
195C ASN* 3.1 41.1 - - + +
----------------------------------------------------------
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Residues in contact with SER 359 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355B ASN 3.0 19.9 + - - -
356B ILE* 3.6 10.5 - - - -
358B ALA* 1.3 76.0 - - - +
360B ILE* 1.3 58.1 + - - +
362B SER* 3.0 7.9 + - - -
363B ILE* 3.0 32.6 + - - +
411B ALA* 3.7 5.3 + - - -
414B ASN* 3.5 6.6 - - - +
415B TYR* 3.0 41.6 + - - +
418B ASN* 4.2 4.3 - - - -
----------------------------------------------------------
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Residues in contact with ILE 360 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225B THR* 3.3 47.1 - - + +
226B ASP 4.3 0.7 - - - +
227B LYS* 3.9 31.2 - - + -
228B PRO* 4.6 2.0 - - + -
356B ILE* 3.4 22.4 - - + +
357B ASN* 3.1 5.0 + - - +
359B SER* 1.3 71.2 - - - +
361B SER* 1.3 66.0 + - - +
362B SER 3.3 0.3 + - - -
363B ILE* 3.3 14.7 + - + +
364B ASN* 3.1 32.4 + - - +
415B TYR* 3.6 20.9 - - + -
----------------------------------------------------------
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Residues in contact with SER 361 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357B ASN 2.8 18.1 + - - -
358B ALA* 3.7 6.3 - - - -
360B ILE* 1.3 77.5 - - - +
362B SER* 1.3 60.1 + - - +
364B ASN* 3.6 13.2 + - - +
365B ALA* 3.3 14.6 + - - +
191C LEU* 3.1 30.7 - - - +
194C ARG* 3.8 12.8 + - - -
----------------------------------------------------------
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Residues in contact with SER 362 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358B ALA 2.7 22.6 + - - -
359B SER* 3.0 7.4 + - - -
361B SER* 1.3 73.1 - - - +
363B ILE* 1.3 56.1 + - - +
365B ALA* 3.1 2.2 + - - +
366B TYR* 2.8 64.6 + - - +
411B ALA* 4.4 9.1 - - - +
188C ALA* 5.5 0.5 + - - +
191C LEU* 3.7 17.1 - - - +
192C THR* 4.5 7.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 363 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223B PHE* 4.9 11.7 - - + -
225B THR* 4.9 11.9 - - + +
359B SER 3.0 16.4 + - - +
360B ILE* 3.3 11.9 + - - +
362B SER* 1.3 75.1 - - - +
364B ASN* 1.3 56.5 + - - +
366B TYR* 3.5 0.4 + - - -
367B LYS* 2.7 48.4 + - + +
408B LEU* 3.5 16.2 - - + +
411B ALA* 3.4 42.2 - - + +
412B ARG* 3.5 26.9 - - + +
415B TYR* 4.8 7.4 - - + -
----------------------------------------------------------
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Residues in contact with ASN 364 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225B THR* 5.4 4.7 - - - +
360B ILE* 3.1 26.8 + - - +
361B SER* 3.6 12.8 + - - +
362B SER 3.2 0.6 - - - -
363B ILE* 1.3 78.1 - - - +
365B ALA* 1.3 64.5 + - - +
367B LYS* 2.9 20.9 + - - +
368B GLN* 3.0 14.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 365 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361B SER 3.3 9.7 + - - +
362B SER* 3.1 7.9 + - - +
364B ASN* 1.3 78.8 - - - +
366B TYR* 1.3 58.9 + - - +
368B GLN* 3.4 5.2 + - - +
369B ALA* 3.0 26.6 + - - +
184C ASP* 4.8 4.7 - - - +
187C LEU* 4.6 13.5 - - + +
188C ALA* 4.0 32.3 - - + +
191C LEU* 4.1 9.0 - - + -
----------------------------------------------------------
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Residues in contact with TYR 366 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362B SER* 2.8 43.6 + - - +
363B ILE* 5.0 0.2 - - - -
365B ALA* 1.3 72.3 - - - +
367B LYS* 1.3 59.7 + - - +
368B GLN 3.3 0.2 - - - -
369B ALA* 3.7 13.9 - - + +
370B VAL* 3.2 32.6 + - - +
404B ALA* 4.9 5.2 - - + +
407B GLU* 3.7 55.2 + - + -
408B LEU* 3.6 23.3 - - + +
411B ALA* 4.4 4.9 - - + -
185C THR* 5.7 7.0 - - + -
188C ALA* 3.6 30.6 + - + +
189C ASN* 4.6 7.2 + - - -
192C THR* 5.2 7.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 367 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B ILE* 2.7 33.7 + - + +
364B ASN* 2.9 10.1 + - - +
366B TYR* 1.3 73.7 - - - +
368B GLN* 1.3 60.4 + - - +
370B VAL* 3.9 4.0 + - - +
371B VAL* 3.3 25.2 + - + +
408B LEU* 3.8 17.5 - - + -
412B ARG* 6.1 1.6 - - - +
----------------------------------------------------------
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Residues in contact with GLN 368 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364B ASN 3.0 10.1 + - - +
365B ALA* 3.9 7.3 - - - +
367B LYS* 1.3 73.4 - - - +
369B ALA* 1.3 58.4 + - - +
370B VAL 3.1 1.6 - - - -
371B VAL* 2.8 17.4 + - + +
372B SER* 2.7 39.0 + - - +
184C ASP* 2.7 34.0 + - - +
187C LEU* 4.3 14.3 - - - +
----------------------------------------------------------
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Residues in contact with ALA 369 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365B ALA 3.0 18.5 + - - +
366B TYR* 3.8 20.2 - - + +
367B LYS 3.5 0.2 - - - -
368B GLN* 1.3 77.6 - - - +
370B VAL* 1.3 55.7 + - - +
372B SER* 3.3 9.3 + - - -
373B ALA* 2.9 29.8 + - - +
404B ALA* 4.4 8.4 - - + +
181C ALA* 5.1 1.6 - - - +
184C ASP* 4.2 12.9 - - + +
185C THR* 4.2 24.7 - - + +
----------------------------------------------------------
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Residues in contact with VAL 370 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366B TYR 3.2 17.5 + - - +
367B LYS 4.0 5.6 - - - +
368B GLN 3.1 0.6 - - - -
369B ALA* 1.3 75.4 - - - +
371B VAL* 1.3 68.9 + - + +
373B ALA* 3.4 16.8 + - - +
374B GLN* 3.8 6.6 + - + +
401B LEU* 3.8 7.2 - - + +
404B ALA* 3.5 33.7 - - + +
405B LYS* 3.5 36.3 - - + +
408B LEU* 4.2 15.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 371 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367B LYS* 3.3 17.2 + - + +
368B GLN* 2.8 20.3 + - + +
370B VAL* 1.3 81.0 - - + +
372B SER* 1.3 60.2 + - - +
374B GLN* 3.0 29.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 372 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368B GLN* 2.7 17.7 + - - -
369B ALA* 3.3 8.5 + - - -
371B VAL* 1.3 71.5 - - - +
373B ALA* 1.3 57.0 + - - +
374B GLN 2.9 11.1 + - - -
375B SER* 3.1 14.6 + - - -
177C GLN* 4.1 3.5 - - - +
180C ARG* 4.4 8.1 - - - -
181C ALA* 3.3 33.7 - - - +
184C ASP* 2.9 28.2 + - - -
----------------------------------------------------------
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Residues in contact with ALA 373 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369B ALA 2.9 20.7 + - - +
370B VAL* 3.4 12.8 - - - +
371B VAL 3.1 0.6 - - - -
372B SER* 1.3 72.5 - - - +
374B GLN* 1.3 63.2 + - - +
375B SER* 3.1 10.1 + - - -
376B SER* 3.3 17.5 + - - -
397B ALA 4.9 0.9 - - - +
400B THR* 4.6 9.2 - - + +
401B LEU* 3.6 34.1 - - + +
404B ALA* 4.9 0.9 - - + -
181C ALA* 4.2 9.4 - - + -
----------------------------------------------------------
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Residues in contact with GLN 374 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B VAL* 3.9 8.0 + - - +
371B VAL* 3.0 17.3 + - - +
372B SER 2.9 3.3 - - - -
373B ALA* 1.3 82.8 - - - +
375B SER* 1.3 59.0 + - - +
376B SER* 3.1 1.4 + - - -
377B LEU* 3.3 53.0 + - + +
378B ASP* 2.9 19.6 - - - +
401B LEU* 3.7 29.6 - - - +
405B LYS* 5.5 4.6 - - - +
177C GLN* 4.1 4.4 + - - -
----------------------------------------------------------
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Residues in contact with SER 375 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372B SER 3.1 8.9 + - - -
373B ALA 3.1 2.0 - - - -
374B GLN* 1.3 77.1 - - - +
376B SER* 1.3 61.3 + - - +
378B ASP* 3.3 7.8 - - - +
379B ALA* 3.4 5.5 - - - +
380B MET* 3.3 31.5 + - - +
397B ALA* 5.1 3.0 - - - +
174C THR 4.6 1.6 + - - -
177C GLN* 3.4 37.5 - - - +
178C ASN* 3.6 21.5 + - - +
181C ALA* 4.8 4.0 - - - -
----------------------------------------------------------
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Residues in contact with SER 376 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373B ALA 3.3 15.0 + - - -
374B GLN* 3.1 4.5 - - - -
375B SER* 1.3 78.0 + - - +
377B LEU* 1.3 67.8 + - - +
378B ASP 3.0 7.6 - - - +
380B MET* 4.1 2.4 - - - +
381B GLU* 3.1 24.2 + - - +
397B ALA* 3.8 32.0 - - - +
398B THR* 3.3 26.3 - - - +
401B LEU* 4.7 7.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 377 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374B GLN* 3.3 49.5 + - + +
376B SER* 1.3 82.7 - - - +
378B ASP* 1.3 65.9 + - + +
381B GLU* 3.2 18.5 - - - +
382B ALA* 4.1 0.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 378 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374B GLN 2.9 15.9 - - - +
375B SER 3.3 1.1 - - - +
376B SER 3.0 6.4 - - - +
377B LEU* 1.3 85.4 - - + +
379B ALA* 1.3 64.8 + - - +
380B MET 2.3 21.7 + - - -
381B GLU 3.0 4.0 + - - -
382B ALA* 3.9 15.0 - - + -
177C GLN* 2.8 27.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 379 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375B SER 3.4 11.7 - - - +
378B ASP* 1.3 81.6 - - - +
380B MET* 1.3 59.8 + - + +
382B ALA* 3.9 5.7 - - - +
383B GLY* 3.4 19.3 + - - -
389B GLU* 3.7 9.5 - - - +
173C ILE* 4.5 3.6 - - - +
174C THR* 3.2 41.0 + - - +
177C GLN* 4.2 13.9 - - + -
----------------------------------------------------------
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Residues in contact with MET 380 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375B SER* 3.3 24.4 + - - +
376B SER* 3.9 7.4 - - - +
378B ASP 2.3 14.5 + - - -
379B ALA* 1.3 70.5 - - - +
381B GLU* 1.3 59.0 + - - +
383B GLY 3.6 0.3 + - - -
384B PHE* 3.0 32.2 + - - +
389B GLU* 3.2 31.8 - - + +
393B ASP* 3.5 42.8 - - + +
394B VAL* 3.5 26.5 - - + +
397B ALA* 3.9 16.8 - - + -
174C THR* 3.4 12.8 - - - +
178C ASN* 6.1 4.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 381 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157B ARG* 3.5 22.8 + - - -
158B GLN* 3.7 30.7 - - - +
161B GLN* 5.9 1.0 + - - -
376B SER* 3.1 26.0 + - - +
377B LEU* 3.2 16.8 - - - +
378B ASP 3.0 2.4 + - - -
380B MET* 1.3 74.5 - - - +
382B ALA* 1.3 66.8 + - - +
384B PHE* 3.9 7.5 - - - +
385B SER* 3.3 22.3 + - - -
394B VAL* 3.8 8.6 - - + +
398B THR* 4.9 5.4 - - - -
----------------------------------------------------------
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Residues in contact with ALA 382 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377B LEU 4.1 1.0 + - - +
378B ASP* 3.5 26.0 + - + -
379B ALA* 3.9 4.5 - - - +
381B GLU* 1.3 77.8 - - - +
383B GLY* 1.3 61.6 + - - +
385B SER* 3.1 22.4 + - - -
386B VAL* 3.4 12.5 - - - +
----------------------------------------------------------
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Residues in contact with GLY 383 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379B ALA 3.4 15.4 + - - -
382B ALA* 1.3 77.2 - - - +
384B PHE* 1.3 58.5 + - - +
386B VAL* 3.4 10.3 + - - +
387B GLY 3.1 4.0 + - - -
388B THR* 2.4 44.7 + - - -
389B GLU* 3.5 10.8 - - - -
----------------------------------------------------------
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Residues in contact with PHE 384 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158B GLN* 4.1 15.0 - - + -
161B GLN* 3.4 43.5 - - + -
162B THR* 3.5 21.3 - - - -
165B ARG* 3.5 21.7 + - - -
380B MET 3.0 21.3 + - - +
381B GLU* 3.9 8.3 - - - +
382B ALA 3.3 0.2 - - - -
383B GLY* 1.3 76.1 - - - +
385B SER* 1.3 63.0 + - - +
387B GLY* 3.2 11.6 + - - -
389B GLU* 3.4 24.4 - - - +
391B ILE* 3.6 26.7 - - + -
394B VAL* 3.5 28.0 - - + -
----------------------------------------------------------
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Residues in contact with SER 385 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161B GLN* 4.6 15.2 - - - +
165B ARG* 3.2 19.1 + - - +
381B GLU 3.3 13.8 + - - -
382B ALA* 3.1 11.4 + - - -
383B GLY 3.3 0.2 - - - -
384B PHE* 1.3 83.5 - - - +
386B VAL* 1.3 68.2 + - - +
387B GLY 3.3 0.4 - - - -
----------------------------------------------------------
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Residues in contact with VAL 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165B ARG* 4.4 2.5 - - - -
382B ALA 3.4 15.0 - - - +
383B GLY* 3.5 13.7 - - - +
385B SER* 1.3 87.0 + - - +
387B GLY* 1.3 55.0 + - - +
388B THR* 3.3 14.8 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il