Contacts of the helix formed by residues 259 - 297 (chain D) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130D PHE* 3.9 23.3 - - + -
255D GLY* 4.1 14.1 - - - -
256D GLU* 3.1 47.6 + - + +
257D PRO 3.3 1.2 - - - +
258D GLY* 1.3 76.2 - - - +
260D GLY* 1.3 63.1 + - - +
261D PHE 3.4 1.3 - - - -
262D LYS* 3.2 42.2 + - + +
263D ILE* 3.0 33.9 + - + +
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Residues in contact with GLY 260 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198D PHE* 3.4 17.1 - - - -
210D ILE* 2.7 33.3 + - - -
211D SER* 3.8 16.1 - - - +
212D ALA 4.0 3.4 - - - -
256D GLU 4.8 0.2 + - - -
258D GLY 3.2 0.2 - - - -
259D MET* 1.3 71.3 - - - +
261D PHE* 1.3 62.3 + - - +
263D ILE* 3.1 4.4 + - - +
264D ALA* 2.9 20.6 + - - +
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Residues in contact with PHE 261 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154D LEU* 6.2 1.3 - - + -
163D ALA* 3.8 13.2 - - + -
164D GLY* 3.4 38.4 - - - -
208D LYS* 5.8 6.5 - - - +
209D SER 6.4 0.2 - - - +
210D ILE* 4.0 21.8 + - + +
258D GLY 4.6 3.2 + - - +
259D MET 3.4 0.8 - - - -
260D GLY* 1.3 75.5 - - - +
262D LYS* 1.3 58.1 + - - +
264D ALA* 3.4 5.7 + - + +
265D MET* 3.0 66.1 + - + +
502D COS 5.0 3.8 - - - -
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Residues in contact with LYS 262 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130D PHE* 4.0 14.9 - - - -
259D MET* 3.2 44.7 + - + +
261D PHE* 1.3 77.3 - - - +
263D ILE* 1.3 60.6 + - - +
265D MET* 3.8 4.6 - - - +
266D GLN* 3.0 60.4 + - + +
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Residues in contact with ILE 263 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126D PRO* 4.2 9.4 - - + -
130D PHE* 3.7 44.7 - - + -
198D PHE* 4.1 14.6 - - + -
212D ALA* 3.8 15.9 - - + +
254D LEU* 3.4 31.0 - - + +
259D MET* 3.0 41.8 + - + +
260D GLY 3.1 5.8 + - - +
262D LYS* 1.3 73.1 - - + +
264D ALA* 1.3 59.1 + - - +
266D GLN* 3.5 1.4 + - - +
267D THR* 2.6 43.7 + - - +
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Residues in contact with ALA 264 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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152D PHE* 4.4 1.7 - - - -
154D LEU* 3.8 26.7 - - + -
198D PHE* 3.6 25.5 - - + -
260D GLY 2.9 15.6 + - - +
261D PHE* 3.6 8.1 - - + +
263D ILE* 1.3 77.4 - - - +
265D MET* 1.3 63.5 + - + +
267D THR* 3.1 5.7 + - - -
268D LEU* 2.9 33.0 + - - +
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Residues in contact with MET 265 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154D LEU* 4.4 0.7 - - + -
163D ALA* 3.8 28.5 - - + -
261D PHE* 3.0 51.0 + - + +
262D LYS* 3.9 6.1 - - - +
263D ILE 3.3 0.2 - - - -
264D ALA* 1.3 84.6 - - + +
266D GLN* 1.3 62.1 + - + +
268D LEU* 3.5 31.5 + - + +
269D ASP* 3.1 31.5 + - - +
272D ARG* 5.5 2.6 + - - -
502D COS 4.2 17.5 - - - +
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Residues in contact with GLN 266 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129D LYS* 2.9 36.1 + - - +
130D PHE* 3.8 14.3 - - + -
262D LYS* 3.0 59.3 + - + +
263D ILE 4.1 2.2 - - - +
265D MET* 1.3 74.8 - - + +
267D THR* 1.3 64.6 + - - +
269D ASP* 3.5 16.3 - - - +
270D MET* 3.5 24.2 + - - +
341D PHE* 5.1 1.2 - - - -
342D ILE* 6.5 0.4 - - + -
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Residues in contact with THR 267 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121D SER 3.5 22.4 - - - +
122D LEU* 3.7 16.4 - - + +
126D PRO* 3.6 24.8 - - + +
130D PHE* 4.7 1.6 - - - -
152D PHE* 3.6 27.4 - - + -
263D ILE* 2.6 27.4 + - - +
264D ALA* 3.1 5.1 + - - -
266D GLN* 1.3 77.1 - - - +
268D LEU* 1.3 60.5 + - - +
270D MET* 3.0 14.7 + - - +
271D GLY* 2.8 23.9 + - - -
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Residues in contact with LEU 268 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122D LEU* 4.6 4.9 - - + -
152D PHE* 4.2 13.2 - - + -
154D LEU* 4.1 11.2 - - + -
264D ALA 2.9 19.3 + - - +
265D MET* 3.7 31.6 - - + +
266D GLN 3.4 0.2 - - - -
267D THR* 1.3 74.1 - - - +
269D ASP* 1.3 59.2 + - - +
271D GLY* 4.2 3.1 - - - +
272D ARG* 2.8 50.7 + - - +
392D GLU* 4.2 20.1 - - + +
502D COS 3.4 50.7 - - - +
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Residues in contact with ASP 269 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265D MET* 3.1 19.7 + - - +
266D GLN* 3.5 19.8 - - - +
267D THR 3.2 0.2 - - - -
268D LEU* 1.3 76.9 - - - +
270D MET* 1.3 61.4 + - - +
272D ARG* 3.5 23.8 + - - +
273D ILE* 3.7 2.8 + - - +
341D PHE* 3.7 23.7 - - + -
342D ILE* 3.6 44.7 - - - +
345D ALA* 3.4 22.8 - - - +
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Residues in contact with MET 270 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95D TYR* 3.6 19.0 - - - +
121D SER* 3.6 17.8 + - - +
125D GLY* 3.8 33.9 - - - +
126D PRO* 4.2 1.3 - - + -
129D LYS* 4.8 17.3 - - + -
130D PHE* 6.0 0.4 - - + -
266D GLN 3.8 8.7 - - - +
267D THR* 3.0 26.4 + - - +
269D ASP* 1.3 73.2 - - - +
271D GLY* 1.3 66.7 + - - +
273D ILE* 3.1 17.6 + - - +
274D GLY 3.5 6.1 + - - -
335D LYS* 2.9 33.0 - - - +
341D PHE* 4.0 18.8 - - + -
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Residues in contact with GLY 271 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117D SER* 4.4 1.5 + - - -
121D SER* 3.6 19.0 - - - -
122D LEU* 4.0 5.4 - - - -
267D THR 2.8 13.2 + - - -
268D LEU 3.2 1.7 + - - -
270D MET* 1.3 76.8 - - - +
272D ARG* 1.3 56.5 + - - +
274D GLY* 2.8 19.2 + - - -
275D ILE* 2.9 13.7 + - - +
392D GLU* 2.9 24.1 - - - +
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Residues in contact with ARG 272 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265D MET* 5.5 2.6 + - - -
268D LEU* 2.8 35.2 + - - +
269D ASP* 3.6 25.3 + - - +
270D MET 3.2 0.4 - - - -
271D GLY* 1.3 76.7 - - - +
273D ILE* 1.3 55.6 + - - +
275D ILE* 4.4 1.8 - - - +
276D ALA* 2.9 29.8 + - - +
342D ILE* 5.5 1.0 + - - +
345D ALA* 4.0 15.9 - - + +
346D ALA* 4.8 7.0 - - - +
349D LYS* 3.7 21.4 - - + +
392D GLU* 2.8 27.7 + - + +
397D ILE* 3.7 18.6 - - - +
398D GLN* 3.4 22.3 + - - +
401D VAL* 4.1 22.2 - - - +
502D COS 3.0 32.9 + - - -
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Residues in contact with ILE 273 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95D TYR* 4.1 30.5 - - + -
98D TYR* 5.3 1.3 - - + -
99D ALA* 4.4 8.1 - - + -
269D ASP 3.7 7.6 + - - +
270D MET 3.1 7.9 + - - +
272D ARG* 1.3 75.4 - - - +
274D GLY* 1.3 58.5 + - - +
276D ALA* 3.7 5.8 + - - +
277D SER* 3.0 31.7 + - - -
328D THR* 4.1 16.1 - - + +
331D ALA* 3.8 30.7 - - + +
332D ALA* 4.2 18.4 - - + +
335D LYS* 4.5 2.7 - - + -
341D PHE* 3.9 26.2 - - + -
345D ALA* 3.9 12.6 - - + -
348D ALA* 5.7 1.6 - - + -
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Residues in contact with GLY 274 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98D TYR* 3.7 19.6 - - - -
102D MET* 3.6 6.8 - - - +
117D SER* 3.4 21.2 + - - -
270D MET 3.5 4.2 + - - -
271D GLY 2.8 9.4 + - - -
273D ILE* 1.3 77.1 - - - +
275D ILE* 1.3 58.1 + - - -
277D SER* 3.2 8.0 + - - -
278D GLN* 3.0 24.6 + - - +
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Residues in contact with ILE 275 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114D VAL* 4.5 6.7 - - + -
117D SER* 4.1 17.7 - - - +
118D VAL* 6.3 0.2 - - + -
271D GLY 2.9 11.5 + - - +
272D ARG* 4.2 3.6 - - - +
274D GLY* 1.3 70.6 - - - +
276D ALA* 1.3 66.7 + - - +
278D GLN* 3.2 20.9 + - - +
279D ALA* 2.9 23.1 + - + +
349D LYS* 4.0 26.2 - - + -
353D SER* 5.8 0.4 - - - -
388D THR* 4.3 11.9 - - - -
391D TYR* 3.7 31.9 - - + +
392D GLU* 3.2 43.3 - - + +
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Residues in contact with ALA 276 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272D ARG 2.9 19.3 + - - +
273D ILE 3.8 4.9 - - - +
275D ILE* 1.3 76.9 - - - +
277D SER* 1.3 56.0 + - - +
279D ALA* 3.3 1.4 + - - -
280D LEU* 2.9 33.9 + - - +
328D THR* 3.5 21.5 - - + +
348D ALA* 3.6 28.7 - - + +
349D LYS* 3.7 5.0 - - - +
352D ALA* 3.3 10.9 - - + +
353D SER* 6.4 0.2 - - - -
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Residues in contact with SER 277 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99D ALA* 3.0 47.1 + - - +
102D MET* 3.6 13.0 - - - -
103D GLU* 3.4 14.4 - - - -
273D ILE 3.0 13.3 + - - -
274D GLY* 3.5 8.5 - - - -
275D ILE 3.2 0.2 - - - -
276D ALA* 1.3 74.4 - - - +
278D GLN* 1.3 62.4 + - - +
280D LEU* 3.4 11.2 + - - +
281D GLY 3.1 17.3 + - - -
328D THR* 3.5 5.5 - - - +
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Residues in contact with GLN 278 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102D MET* 3.8 15.3 - - + +
106D SER* 3.3 28.3 - - - +
110D ALA* 3.1 28.7 + - - +
114D VAL* 3.9 7.7 - - - +
233D ILE* 3.6 16.2 - - - +
274D GLY 3.0 8.6 + - - +
275D ILE* 3.2 15.2 + - + +
277D SER* 1.3 73.2 - - - +
279D ALA* 1.3 60.5 + - - +
281D GLY 3.1 1.7 + - - -
282D ILE* 3.0 34.8 + - + +
388D THR* 3.7 18.5 - - - +
391D TYR* 2.7 31.1 + - - -
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Residues in contact with ALA 279 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275D ILE 2.9 12.4 + - - +
276D ALA* 3.5 9.4 - - - +
278D GLN* 1.3 73.0 + - - +
280D LEU* 1.3 60.2 + - - +
282D ILE* 3.4 3.2 + - - +
283D ALA* 2.9 30.3 + - - +
352D ALA* 3.6 29.6 - - + +
353D SER* 3.8 11.2 - - - +
356D ALA* 3.7 10.2 - - + +
388D THR* 4.0 17.7 - - - +
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Residues in contact with LEU 280 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99D ALA* 5.7 0.7 - - + +
103D GLU* 3.7 25.3 - - + +
276D ALA 2.9 18.7 + - - +
277D SER* 3.4 15.5 - - - +
279D ALA* 1.3 76.6 - - - +
281D GLY* 1.3 56.0 + - - +
283D ALA* 3.7 2.3 - - - +
284D GLN* 2.8 31.5 + - - +
321D LEU* 3.7 24.9 - - + +
324D ALA* 3.7 15.3 - - + +
325D ARG* 3.6 34.8 - - + +
328D THR* 3.8 27.6 - - + +
329D TRP* 5.3 2.0 - - - +
352D ALA* 4.2 5.6 - - + -
355D ALA* 6.4 0.2 - - + -
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Residues in contact with GLY 281 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103D GLU* 3.4 30.4 - - - +
106D SER* 4.2 0.9 - - - -
107D ARG* 3.3 25.4 - - - +
277D SER 3.1 5.1 + - - -
278D GLN 3.1 7.3 + - - -
280D LEU* 1.3 75.5 - - - +
282D ILE* 1.3 63.9 + - - +
284D GLN* 3.5 1.6 + - - -
285D THR* 3.2 18.2 + - - +
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Residues in contact with ILE 282 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106D SER 4.4 6.3 - - - +
110D ALA* 3.8 31.9 - - + -
278D GLN* 3.0 31.0 + - + +
279D ALA* 3.7 6.7 - - - +
281D GLY* 1.3 74.3 - - - +
283D ALA* 1.3 63.0 + - - +
285D THR* 3.4 9.5 - - - +
286D ALA* 3.0 24.0 + - - +
356D ALA* 4.6 2.9 - - + +
360D SER* 5.2 0.7 - - - -
381D HIS* 3.8 34.9 - - + +
384D ASP* 4.0 23.1 - - + +
385D ALA* 3.9 13.7 - - + +
388D THR* 4.3 10.8 - - + -
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Residues in contact with ALA 283 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279D ALA 2.9 17.1 + - - +
280D LEU* 3.7 4.9 - - + +
282D ILE* 1.3 77.6 - - - +
284D GLN* 1.3 62.8 + - - +
286D ALA* 3.4 1.6 + - - -
287D LEU* 3.0 24.9 + - - +
321D LEU* 3.9 12.6 - - + -
352D ALA 5.2 0.7 - - - +
355D ALA* 4.7 2.0 - - + -
356D ALA* 4.0 17.2 - - - +
359D ILE* 3.6 36.6 - - + +
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Residues in contact with GLN 284 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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410B TYR* 3.5 11.1 + - - -
103D GLU* 4.2 12.2 - - - +
107D ARG* 4.0 16.8 - - - +
280D LEU 2.8 21.2 + - - +
281D GLY* 3.9 4.9 - - - +
282D ILE 3.4 0.2 - - - -
283D ALA* 1.3 74.0 - - - +
285D THR* 1.3 57.7 + - - +
287D LEU* 3.4 5.1 + - - +
288D ASP* 2.9 63.0 + - - +
321D LEU* 3.4 17.7 - - + +
325D ARG* 3.0 26.0 + - - -
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Residues in contact with THR 285 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54D PHE* 3.7 17.5 - - - -
106D SER 4.9 1.3 - - - +
107D ARG* 3.3 32.3 + - - +
281D GLY 3.2 12.1 + - - +
282D ILE* 3.4 14.6 - - - +
284D GLN* 1.3 75.0 - - - +
286D ALA* 1.3 62.9 + - - +
288D ASP* 3.4 11.9 + - - +
289D CYS* 2.9 29.5 + - - +
381D HIS* 3.5 31.5 + - + +
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Residues in contact with ALA 286 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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282D ILE 3.0 19.0 + - - +
283D ALA* 3.8 4.0 - - - +
285D THR* 1.3 79.6 - - - +
287D LEU* 1.3 56.2 + - - +
289D CYS* 3.3 4.7 - - - +
290D ALA* 3.0 22.2 + - - +
359D ILE* 4.2 6.5 - - + -
360D SER* 4.1 22.4 - - - -
363D ALA* 3.5 17.5 - - + +
381D HIS* 3.8 27.4 - - + -
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Residues in contact with LEU 287 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406B LEU* 4.6 9.4 - - + -
410B TYR* 3.8 13.7 - - - +
283D ALA 3.0 18.3 + - - +
284D GLN* 3.7 7.0 - - - +
286D ALA* 1.3 73.5 - - - +
288D ASP* 1.3 64.6 + - - +
290D ALA* 3.3 0.5 + - - -
291D VAL* 3.0 35.4 + - + +
314D LEU* 3.8 22.0 - - + +
317D MET* 3.7 37.7 - - + -
318D ALA* 4.1 24.7 - - + +
321D LEU* 3.9 21.8 - - + -
359D ILE* 4.0 6.8 - - + +
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Residues in contact with ASP 288 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410B TYR* 2.6 41.2 + - + -
107D ARG* 3.1 38.1 + - - +
284D GLN* 2.9 34.3 + - - +
285D THR* 3.6 10.1 + - - +
287D LEU* 1.3 74.3 - - - +
289D CYS* 1.3 63.1 + - - +
291D VAL* 3.5 1.0 + - - +
292D ASN* 3.0 37.3 + - - +
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Residues in contact with CYS 289 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285D THR 2.9 18.0 + - - +
286D ALA* 3.3 9.6 - - - +
288D ASP* 1.3 78.6 - - - +
290D ALA* 1.3 61.5 + - - +
292D ASN* 4.1 4.1 - - - +
293D TYR* 3.1 25.8 + - - +
363D ALA* 5.5 1.1 - - - -
367D LEU* 4.0 26.9 - - - -
376D MET* 4.6 5.7 - - - +
377D PRO* 4.0 26.5 - - + -
378D ALA* 4.5 11.0 - - - -
381D HIS* 4.8 4.5 - - + +
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Residues in contact with ALA 290 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286D ALA 3.0 16.3 + - - +
287D LEU 3.3 4.4 + - - +
289D CYS* 1.3 75.2 - - - +
291D VAL* 1.3 57.4 + - - +
293D TYR* 3.5 1.2 + - - +
294D ALA* 2.9 33.8 + - - +
314D LEU* 4.2 4.3 - - + -
317D MET* 4.0 9.2 - - + -
363D ALA* 4.0 15.9 - - - -
366D ILE* 3.8 28.8 - - + +
367D LEU* 4.2 11.4 - - - -
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Residues in contact with VAL 291 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406B LEU* 4.5 7.0 - - + -
407B LEU* 3.9 20.6 - - + -
410B TYR* 3.6 49.8 - - + -
287D LEU* 3.0 27.6 + - + +
288D ASP 4.0 2.9 - - - +
290D ALA* 1.3 74.6 - - - +
292D ASN* 1.3 66.5 + - - +
294D ALA* 3.5 3.1 + - - +
295D GLU* 3.0 28.9 + - + +
305D THR* 4.6 0.3 - - - +
314D LEU* 3.6 26.5 - - + -
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Residues in contact with ASN 292 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410B TYR* 4.3 18.6 - - - +
288D ASP* 3.0 28.8 + - - +
289D CYS* 4.1 4.2 - - - +
291D VAL* 1.3 78.2 - - - +
293D TYR* 1.3 62.5 + - - +
295D GLU* 3.6 3.3 + - - +
296D ASN* 2.7 34.1 + - - +
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Residues in contact with TYR 293 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501C FAD 4.9 1.2 + - - -
289D CYS 3.1 18.4 + - - +
290D ALA 3.8 0.9 - - - +
292D ASN* 1.3 79.2 - - - +
294D ALA* 1.3 57.8 + - - +
296D ASN* 3.0 6.1 + - + +
297D ARG* 2.8 74.6 + - + +
304D LEU* 4.3 1.8 - - + -
366D ILE 3.9 9.6 - - - -
367D LEU* 3.6 49.4 + - + -
370D MET* 3.7 24.2 - - + +
376D MET* 3.7 28.0 - - + -
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Residues in contact with ALA 294 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290D ALA 2.9 19.0 + - - +
291D VAL* 4.1 1.6 - - - +
293D TYR* 1.3 76.4 - - - +
295D GLU* 1.3 61.6 + - - +
296D ASN 3.4 0.3 + - - -
297D ARG 3.7 1.7 - - - +
303D PRO* 3.8 0.3 - - - +
304D LEU* 3.1 49.5 + - + +
305D THR* 3.3 22.9 + - + -
310D ILE* 4.1 7.4 - - + -
314D LEU* 4.9 2.5 - - + -
366D ILE* 4.0 13.9 - - + -
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Residues in contact with GLU 295 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B LEU* 4.1 8.9 - - - +
410B TYR* 5.5 2.2 - - + +
411B ARG* 2.8 47.6 + - - +
291D VAL* 3.0 34.2 + - + +
292D ASN* 3.9 8.1 - - - +
293D TYR 3.2 0.4 - - - -
294D ALA* 1.3 76.7 - - - +
296D ASN* 1.3 65.9 + - - +
298D MET* 4.5 2.9 - - - +
303D PRO* 3.7 18.0 - - - +
305D THR* 2.6 35.6 + - + -
----------------------------------------------------------
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Residues in contact with ASN 296 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292D ASN* 2.7 27.7 + - - +
293D TYR* 3.0 4.8 + - - +
295D GLU* 1.3 88.9 - - - +
297D ARG* 1.3 61.5 + - - +
298D MET* 3.7 17.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C GLU 4.9 0.2 + - - -
157C PRO 3.0 28.7 + - - -
158C GLY* 3.6 26.7 + - - -
159C ASN* 3.7 3.2 - - - +
160C GLY 4.2 0.2 - - - +
185C TRP* 6.1 0.2 - - - +
501C FAD 2.9 44.1 + - - +
293D TYR* 2.8 47.6 + - + +
294D ALA 3.9 0.4 + - - -
296D ASN* 1.3 77.3 - - - +
298D MET* 1.3 72.7 + - - +
303D PRO* 3.1 4.6 - - - +
304D LEU* 2.9 56.5 + - + +
370D MET* 6.2 0.4 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il