Contacts of the helix formed by residues 49 - 76 (chain C) in PDB entry 2W5J


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ILE 49 (chain C).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35C  ALA*     4.8     2.0    -      -       +      -
     39C  ILE*     2.9    39.7    -      -       +      -
     45C  ALA      3.3     5.4    +      -       -      +
     47C  GLY      2.8     2.1    -      -       -      +
     48C  LYS*     1.3    74.4    -      -       -      +
     50C  ARG*     1.3    68.9    +      -       +      +
     51C  GLY      3.1     1.8    -      -       -      -
     52C  THR*     2.8    19.1    +      -       -      -
     53C  LEU      3.3     5.9    +      -       -      -
     36D  VAL*     3.7    30.9    -      -       +      +
     39D  ILE*     4.7     6.2    -      -       +      +
     40D  ALA*     5.9     1.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 50 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47B  GLY      4.0     0.8    +      -       -      -
     48B  LYS*     2.8    24.4    +      -       -      +
     51B  GLY*     3.4    15.1    +      -       -      -
     52B  THR*     2.5    56.7    +      -       +      +
     55B  LEU*     4.6     8.5    -      -       +      -
     35C  ALA*     5.8     0.2    -      -       -      +
     39C  ILE*     5.9     2.0    -      -       +      +
     46C  GLU*     3.4    23.4    +      -       +      +
     47C  GLY*     2.9    21.3    +      -       -      +
     49C  ILE*     1.3    78.3    -      -       +      +
     51C  GLY*     1.3    64.3    +      -       -      +
     52C  THR      2.8     0.9    +      -       -      -
     53C  LEU*     2.8     8.9    +      -       -      -
     54C  LEU*     2.7    41.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 51 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47C  GLY      2.7    16.3    +      -       -      -
     50C  ARG*     1.3    71.8    -      -       -      +
     52C  THR*     1.3    56.0    +      -       -      +
     54C  LEU*     4.5     6.1    -      -       -      +
     55C  LEU*     3.2    22.0    +      -       -      +
     50D  ARG*     3.3    21.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 52 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48C  LYS      3.8     3.5    +      -       -      -
     49C  ILE*     2.8    13.7    +      -       -      -
     51C  GLY*     1.3    71.8    -      -       -      -
     53C  LEU*     1.3    56.4    +      -       -      -
     54C  LEU      3.2     1.1    -      -       -      -
     55C  LEU*     2.8    18.6    +      -       +      +
     56C  SER*     2.5    39.1    +      -       -      +
     32D  ALA      5.7     0.7    -      -       -      +
     35D  ALA*     5.3     3.6    -      -       +      -
     36D  VAL*     5.5     8.9    -      -       -      -
     39D  ILE*     5.3     5.9    -      -       +      +
     50D  ARG*     2.4    44.8    +      -       +      +
     53D  LEU*     3.0    37.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 53 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52B  THR*     3.0    26.5    -      -       +      -
     55B  LEU*     3.1    33.2    -      -       +      -
     56B  SER*     3.6    11.2    -      -       -      +
     31C  ALA*     5.6     4.5    -      -       -      +
     32C  ALA*     3.8    20.0    -      -       -      +
     35C  ALA*     3.9    17.7    -      -       +      -
     49C  ILE      3.3     5.2    +      -       -      +
     50C  ARG*     2.8    14.6    +      -       -      +
     52C  THR*     1.3    79.7    -      -       -      +
     54C  LEU*     1.3    70.1    +      -       +      +
     56C  SER*     3.4     4.3    -      -       -      -
     57C  LEU*     2.5    61.8    +      -       +      +
     32D  ALA*     5.8     0.7    -      -       -      -
     36D  VAL*     4.9     5.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 54 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55B  LEU*     3.0    48.0    -      -       +      -
     59B  PHE*     4.5     8.3    -      -       +      -
     50C  ARG*     2.7    33.4    +      -       +      +
     51C  GLY*     4.5     4.7    -      -       -      +
     53C  LEU*     1.3    80.6    -      -       +      +
     55C  LEU*     1.3    54.5    +      -       -      +
     57C  LEU*     3.8     3.4    -      -       -      -
     58C  ALA*     2.6    37.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 55 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51C  GLY      3.2    16.4    +      -       -      +
     52C  THR*     2.8    24.5    +      -       +      +
     54C  LEU*     1.3    73.7    -      -       -      +
     56C  SER*     1.3    58.3    +      -       -      +
     58C  ALA*     3.0    23.5    -      -       -      +
     59C  PHE*     3.2    22.8    -      -       +      -
     50D  ARG*     4.5     8.1    -      -       +      -
     53D  LEU*     3.1    21.5    -      -       +      -
     54D  LEU*     2.9    46.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 56 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31C  ALA*     5.1     0.2    -      -       -      -
     52C  THR*     2.5    19.9    +      -       -      +
     53C  LEU*     3.4     6.7    -      -       -      -
     55C  LEU*     1.3    68.5    -      -       -      +
     57C  LEU*     1.3    54.1    +      -       -      -
     58C  ALA      2.7    15.6    +      -       -      -
     59C  PHE*     2.7    19.9    +      -       -      -
     60C  MET*     3.2    10.8    +      -       -      +
     32D  ALA*     3.2    35.6    -      -       -      +
     53D  LEU*     3.4    10.7    -      -       -      +
     57D  LEU*     3.4    25.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 57 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56B  SER*     3.5    24.0    -      -       -      +
     59B  PHE*     3.2    49.5    -      -       +      -
     28C  GLN*     3.9    31.0    -      -       +      +
     31C  ALA*     4.0    14.6    -      -       +      -
     32C  ALA      4.3     1.8    -      -       -      +
     53C  LEU*     2.5    55.4    +      -       +      +
     54C  LEU*     3.6     3.8    -      -       -      +
     56C  SER*     1.3    69.6    -      -       -      +
     58C  ALA*     1.3    65.1    +      -       -      +
     60C  MET*     4.1     8.3    -      -       -      +
     61C  GLU*     3.6    11.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 58 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59B  PHE*     5.0     1.3    -      -       -      -
     54C  LEU      2.6    16.2    +      -       -      +
     55C  LEU*     3.0    17.9    -      -       -      +
     56C  SER      2.7     2.6    +      -       -      -
     57C  LEU*     1.3    76.9    -      -       -      +
     59C  PHE*     1.3    65.1    +      -       +      +
     60C  MET      3.1     0.2    -      -       -      -
     61C  GLU*     2.9    22.5    +      -       -      +
     62C  ALA*     3.2     4.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 59 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55C  LEU*     3.2    31.9    -      -       +      -
     56C  SER      2.7    10.5    +      -       -      -
     58C  ALA*     1.3    77.9    -      -       +      +
     60C  MET*     1.3    59.2    +      -       -      +
     62C  ALA*     3.4    13.9    -      -       +      -
     63C  LEU*     3.9     3.6    -      -       -      +
     28D  GLN*     5.6     6.4    -      -       +      +
     54D  LEU*     4.4     8.5    -      -       +      -
     57D  LEU*     3.1    63.0    -      -       +      -
     58D  ALA*     4.9     1.1    -      -       -      -
     61D  GLU*     2.9    44.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 60 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24C  PRO*     4.3    14.4    -      -       +      -
     28C  GLN*     3.6    36.3    -      -       +      +
     56C  SER      3.2     8.4    +      -       -      +
     57C  LEU*     4.2     5.4    -      -       -      +
     58C  ALA      3.0     1.0    +      -       -      -
     59C  PHE*     1.3    75.6    -      -       -      +
     61C  GLU*     1.3    59.2    +      -       -      +
     62C  ALA      3.0     4.9    +      -       -      -
     63C  LEU*     2.9    31.3    +      -       -      +
     64C  THR*     3.7     4.3    +      -       -      +
     25D  GLY*     5.5     4.0    -      -       -      +
     28D  GLN*     6.4     1.8    -      -       +      -
     29D  GLY*     5.9     4.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 61 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59B  PHE*     2.9    49.6    -      -       +      +
     62B  ALA*     3.0    21.1    -      -       -      +
     63B  LEU*     3.2    19.1    +      -       +      +
     66B  TYR*     2.5    25.8    +      -       -      +
     57C  LEU      3.6     3.3    +      -       -      +
     58C  ALA*     2.9    12.2    +      -       -      +
     60C  MET*     1.3    78.3    -      -       +      +
     62C  ALA*     1.3    60.2    +      -       -      +
     64C  THR*     2.9    29.2    +      -       -      -
     65C  ILE*     3.2    12.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 62 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58C  ALA      3.2     4.9    +      -       -      +
     59C  PHE*     3.4    19.5    -      -       +      -
     60C  MET      3.0     1.0    +      -       -      -
     61C  GLU*     1.3    75.7    -      -       -      +
     63C  LEU*     1.3    57.9    +      -       -      +
     64C  THR      3.1     0.2    -      -       -      -
     65C  ILE*     2.7    40.7    +      -       +      +
     66C  TYR*     2.9    18.9    -      -       +      +
     61D  GLU*     3.0    17.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 63 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20C  ALA*     4.2     2.1    -      -       -      +
     24C  PRO*     3.2    24.9    -      -       +      -
     59C  PHE      3.9     3.4    -      -       -      +
     60C  MET*     2.9    27.1    +      -       -      +
     62C  ALA*     1.3    76.8    -      -       -      +
     64C  THR*     1.3    57.6    +      -       -      +
     66C  TYR*     3.6    22.3    -      -       +      +
     67C  GLY      4.7     0.2    +      -       -      -
     20D  ALA      4.5     0.9    -      -       -      +
     21D  SER*     3.7    19.9    -      -       -      +
     24D  PRO*     3.8    13.9    -      -       +      -
     25D  GLY*     4.4     4.9    -      -       -      +
     60D  MET*     6.0     0.2    -      -       +      -
     61D  GLU*     3.2    25.8    -      -       +      +
     64D  THR*     3.0    47.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 64 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63B  LEU*     3.1    30.5    -      -       +      +
     66B  TYR*     3.5    10.2    -      -       -      -
     20C  ALA*     2.6    42.4    -      -       -      +
     24C  PRO*     3.1    19.3    -      -       +      -
     60C  MET      3.7     3.8    -      -       -      +
     61C  GLU*     2.9    25.3    +      -       -      -
     62C  ALA      3.0     0.6    +      -       -      -
     63C  LEU*     1.3    75.6    -      -       -      +
     65C  ILE*     1.3    69.1    +      -       -      +
     66C  TYR      3.2     0.9    -      -       -      -
     67C  GLY      3.2     3.5    +      -       -      -
     68C  LEU*     3.2    16.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 65 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66B  TYR*     3.3    30.5    -      -       +      +
     61C  GLU*     3.2    12.6    -      -       +      +
     62C  ALA*     2.7    32.7    +      -       +      +
     64C  THR*     1.3    78.3    +      -       -      +
     66C  TYR*     1.3    63.1    +      -       +      +
     67C  GLY      2.9     2.5    -      -       -      -
     68C  LEU*     2.8    13.7    +      -       +      -
     69C  VAL*     2.5    44.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 66 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62C  ALA*     2.9    29.9    -      -       +      +
     63C  LEU*     3.6    18.8    -      -       +      +
     65C  ILE*     1.3    81.7    -      -       +      +
     67C  GLY*     1.3    58.3    +      -       -      +
     69C  VAL*     3.4     7.7    -      -       -      +
     70C  VAL*     3.1    32.4    +      -       -      +
     61D  GLU*     2.6    37.9    +      -       -      +
     64D  THR*     3.4    10.8    -      -       -      -
     65D  ILE*     3.2    28.1    -      -       +      +
     68D  LEU*     3.3    40.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 67 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17C  VAL*     3.0    30.2    -      -       -      +
     20C  ALA*     4.6     2.2    -      -       -      -
     63C  LEU      4.7     2.0    +      -       -      -
     64C  THR      3.2     6.2    +      -       -      -
     65C  ILE      2.9     0.4    -      -       -      -
     66C  TYR*     1.3    76.8    -      -       -      +
     68C  LEU*     1.3    52.3    +      -       -      +
     69C  VAL      2.9     1.6    -      -       -      -
     70C  VAL*     2.6    10.1    +      -       -      -
     71C  ALA      2.2    36.0    +      -       -      -
     17D  VAL      6.0     1.8    -      -       -      -
     18D  GLY*     6.0     1.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 68 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66B  TYR*     3.3    55.9    -      -       +      +
     69B  VAL*     4.8     3.4    -      -       +      -
     70B  VAL*     3.4    31.2    -      -       +      -
     17C  VAL*     4.0     3.7    +      -       -      +
     64C  THR      3.2     8.0    +      -       -      +
     65C  ILE*     2.8    22.0    +      -       +      +
     67C  GLY*     1.3    70.1    -      -       -      +
     69C  VAL*     1.3    61.4    +      -       -      +
     71C  ALA*     3.3     6.7    -      -       +      +
     72C  LEU*     3.1    45.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 69 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65C  ILE*     2.5    30.1    +      -       +      +
     66C  TYR*     3.4    10.5    -      -       -      +
     67C  GLY      2.8     0.2    +      -       -      -
     68C  LEU*     1.3    72.2    -      -       -      +
     70C  VAL*     1.3    65.3    +      -       +      +
     71C  ALA      3.0     0.4    -      -       -      -
     72C  LEU*     3.2     5.4    +      -       -      +
     73C  ALA*     2.7    40.9    +      -       +      +
     68D  LEU*     4.8     5.4    -      -       +      -
     72D  LEU*     4.9     6.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 70 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14C  GLY*     5.6     0.3    -      -       -      -
     17C  VAL*     5.4     6.0    -      -       +      +
     66C  TYR      3.1    16.8    +      -       -      +
     67C  GLY*     2.6    11.1    +      -       -      +
     69C  VAL*     1.3    77.7    -      -       +      +
     71C  ALA*     1.3    62.3    +      -       -      +
     73C  ALA*     3.8     6.5    -      -       -      -
     74C  LEU*     3.2    22.8    +      -       +      +
     14D  GLY      5.6     1.3    -      -       -      -
     15D  LEU*     5.5    14.6    -      -       +      +
     68D  LEU*     3.3    16.6    -      -       +      -
     71D  ALA*     4.5    15.9    -      -       +      +
     72D  LEU*     3.1    33.7    -      -       +      -
     75D  LEU*     4.3    11.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 71 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70B  VAL*     4.5    21.1    -      -       +      +
     14C  GLY*     4.3    24.3    -      -       -      +
     17C  VAL*     4.3    15.4    -      -       +      +
     67C  GLY      2.2    31.1    +      -       -      +
     68C  LEU*     3.3    16.6    -      -       -      +
     70C  VAL*     1.3    70.6    -      -       -      +
     72C  LEU*     1.3    60.4    +      -       -      +
     74C  LEU*     4.2     2.4    -      -       -      +
     75C  LEU*     3.4    22.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 72 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69B  VAL*     4.8     8.1    -      -       +      -
     70B  VAL*     3.1    31.6    -      -       +      -
     73B  ALA*     5.1     2.0    -      -       +      -
     68C  LEU*     3.1    33.0    +      -       +      +
     69C  VAL*     4.0     2.9    -      -       -      +
     71C  ALA*     1.3    73.2    -      -       -      +
     73C  ALA*     1.3    59.7    +      -       -      +
     74C  LEU      3.2     2.0    -      -       -      -
     75C  LEU*     3.1    21.7    +      -       +      -
     76C  PHE*     2.7    43.9    +      -       +      +
     77C  ALA*     3.4     3.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 73 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69C  VAL*     2.7    27.4    +      -       +      +
     70C  VAL*     3.9     9.4    -      -       -      -
     71C  ALA      3.5     0.2    -      -       -      -
     72C  LEU*     1.3    74.3    -      -       -      +
     74C  LEU*     1.3    56.6    +      -       -      +
     77C  ALA*     3.0    39.2    -      -       +      +
     78C  ASN*     3.2     0.5    +      -       -      -
     72D  LEU*     5.1     2.2    -      -       +      -
     75D  LEU*     4.4     3.4    -      -       +      -
     76D  PHE*     3.5    26.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 74 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10C  VAL*     3.7    21.8    -      -       -      +
     13C  ALA*     6.0     0.9    -      -       +      -
     14C  GLY*     5.1     5.2    -      -       -      +
     70C  VAL*     3.2    20.0    +      -       +      +
     71C  ALA      4.2     3.4    -      -       -      +
     73C  ALA*     1.3    76.4    -      -       -      +
     75C  LEU*     1.3    56.7    +      -       -      +
     78C  ASN*     2.7    32.4    -      -       -      +
     11D  ILE*     4.0    22.0    -      -       +      -
     15D  LEU*     6.4     1.6    -      -       +      -
     75D  LEU*     4.5    12.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 75 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70B  VAL*     4.2    16.2    -      -       +      -
     73B  ALA*     4.3    10.1    -      -       +      +
     74B  LEU*     4.6     6.1    -      -       +      +
     79B  PRO*     3.5    42.6    -      -       +      +
     10C  VAL*     5.3    10.5    -      -       +      +
     11C  ILE*     3.9    26.2    -      -       +      -
     14C  GLY*     6.2     1.1    -      -       -      -
     71C  ALA      3.4    14.7    +      -       -      +
     72C  LEU*     3.1    19.7    +      -       +      +
     74C  LEU*     1.3    82.8    -      -       -      +
     76C  PHE*     1.3    93.2    +      -       +      +
     77C  ALA      3.5     0.6    +      -       -      -
     78C  ASN*     4.1     6.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 76 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73B  ALA*     3.5    32.5    -      -       +      -
     77B  ALA*     3.4    25.8    -      -       +      -
     79B  PRO*     3.6    25.1    -      -       +      -
     72C  LEU*     2.7    26.8    +      -       +      +
     75C  LEU*     1.3   106.5    -      -       +      +
     77C  ALA*     1.3    56.1    +      -       -      +
     78C  ASN      3.6     0.9    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il