Contacts of the helix formed by residues 49 - 76 (chain H) in PDB entry 2W5J


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ILE 49 (chain H).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35H  ALA*     4.9     2.5    -      -       +      -
     39H  ILE*     2.9    40.6    -      -       +      -
     45H  ALA      3.3     5.0    +      -       -      +
     47H  GLY      2.8     3.3    -      -       -      +
     48H  LYS*     1.3    76.1    -      -       -      +
     50H  ARG*     1.3    68.8    +      -       +      +
     52H  THR*     2.7    19.6    +      -       -      -
     53H  LEU*     3.3     6.3    +      -       -      -
     36I  VAL*     3.8    29.6    -      -       +      +
     39I  ILE*     5.0     3.3    -      -       +      +
     40I  ALA*     6.2     1.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 50 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47G  GLY      3.9     1.0    +      -       -      -
     48G  LYS*     2.9    23.4    +      -       -      +
     51G  GLY*     3.3    15.9    +      -       -      -
     52G  THR*     2.6    57.7    +      -       +      +
     55G  LEU*     4.6     9.0    -      -       +      -
     39H  ILE*     6.0     1.6    -      -       +      -
     46H  GLU*     3.4    24.0    +      -       +      +
     47H  GLY*     2.9    23.8    +      -       -      +
     49H  ILE*     1.3    77.5    -      -       +      +
     51H  GLY*     1.3    63.6    +      -       -      +
     52H  THR      2.8     0.7    +      -       -      -
     53H  LEU*     2.9     8.9    +      -       -      -
     54H  LEU*     2.8    40.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 51 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47H  GLY      2.7    16.9    +      -       -      -
     49H  ILE      2.9     0.2    +      -       -      -
     50H  ARG*     1.3    71.6    -      -       -      +
     52H  THR*     1.3    55.7    +      -       -      +
     54H  LEU*     4.5     6.6    -      -       -      +
     55H  LEU*     3.2    22.2    +      -       -      +
     50I  ARG*     3.3    21.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 52 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48H  LYS      3.8     2.9    +      -       -      -
     49H  ILE*     2.7    13.4    +      -       -      -
     51H  GLY*     1.3    71.4    -      -       -      +
     53H  LEU*     1.3    57.6    +      -       -      +
     54H  LEU      3.2     1.1    -      -       -      -
     55H  LEU*     2.8    16.2    +      -       +      +
     56H  SER*     2.4    40.2    +      -       -      +
     32I  ALA      5.6     1.1    -      -       -      +
     35I  ALA*     5.4     3.6    -      -       +      -
     36I  VAL*     5.4     9.7    -      -       +      +
     39I  ILE*     5.4     6.1    -      -       +      +
     50I  ARG*     2.5    36.4    +      -       +      +
     53I  LEU*     3.0    38.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 53 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52G  THR*     3.0    28.0    -      -       +      -
     55G  LEU*     3.1    27.4    -      -       +      -
     56G  SER*     3.5    11.0    -      -       -      +
     31H  ALA*     5.6     3.6    -      -       -      +
     32H  ALA*     3.8    20.0    -      -       -      +
     35H  ALA*     3.9    19.3    -      -       +      -
     49H  ILE      3.3     3.7    +      -       -      +
     50H  ARG*     2.9    13.0    +      -       -      +
     52H  THR*     1.3    78.5    -      -       -      +
     54H  LEU*     1.3    68.5    +      -       +      +
     56H  SER*     3.3     4.4    -      -       -      -
     57H  LEU*     2.4    69.7    +      -       +      +
     32I  ALA*     6.0     0.2    -      -       -      -
     36I  VAL*     5.0     5.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 54 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55G  LEU*     3.0    47.6    -      -       +      -
     59G  PHE*     4.6     8.5    -      -       +      -
     50H  ARG*     2.8    33.2    +      -       +      +
     51H  GLY*     4.5     4.7    -      -       -      +
     53H  LEU*     1.3    81.6    -      -       +      +
     55H  LEU*     1.3    53.9    +      -       -      +
     57H  LEU*     3.4     2.9    -      -       -      -
     58H  ALA*     2.6    36.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 55 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51H  GLY      3.2    16.4    +      -       -      +
     52H  THR*     2.8    20.5    +      -       +      +
     54H  LEU*     1.3    76.7    -      -       -      +
     56H  SER*     1.3    59.2    +      -       -      +
     58H  ALA*     3.0    24.5    -      -       -      +
     59H  PHE*     3.3    22.9    -      -       +      -
     50I  ARG*     4.6     8.5    -      -       -      -
     53I  LEU*     3.2    20.2    -      -       +      -
     54I  LEU*     3.1    45.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 56 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31H  ALA*     5.1     0.2    -      -       -      -
     52H  THR*     2.4    28.5    +      -       -      +
     53H  LEU*     3.4     4.0    -      -       -      -
     55H  LEU*     1.3    68.0    -      -       -      +
     57H  LEU*     1.3    56.5    +      -       -      +
     58H  ALA      2.7    15.6    +      -       -      -
     59H  PHE*     2.7    19.2    +      -       -      -
     60H  MET*     3.2    10.2    +      -       -      -
     29I  GLY*     6.2     0.2    -      -       -      -
     32I  ALA*     3.2    35.2    -      -       -      +
     53I  LEU*     3.6     9.7    -      -       -      +
     57I  LEU*     3.6    24.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 57 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56G  SER*     3.4    24.2    -      -       -      +
     59G  PHE*     3.1    49.3    -      -       +      -
     28H  GLN*     4.0    29.8    -      -       +      +
     31H  ALA*     4.0    13.9    -      -       +      -
     32H  ALA      4.3     2.0    -      -       -      +
     53H  LEU*     2.4    72.3    +      -       +      +
     54H  LEU*     3.6     3.8    -      -       -      +
     56H  SER*     1.3    65.8    -      -       -      +
     58H  ALA*     1.3    65.6    +      -       -      +
     60H  MET*     4.1     9.3    -      -       -      +
     61H  GLU*     3.6    10.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 58 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59G  PHE*     4.9     0.6    -      -       -      -
     54H  LEU      2.6    16.6    +      -       -      +
     55H  LEU*     3.0    17.7    -      -       -      +
     56H  SER      2.7     2.4    +      -       -      -
     57H  LEU*     1.3    76.9    -      -       -      +
     59H  PHE*     1.3    65.5    +      -       +      +
     60H  MET      3.2     0.2    -      -       -      -
     61H  GLU*     2.9    21.9    +      -       -      +
     62H  ALA*     3.2     4.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 59 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55H  LEU*     3.3    32.5    -      -       +      -
     56H  SER      2.7    10.6    +      -       -      -
     58H  ALA*     1.3    77.0    -      -       +      +
     60H  MET*     1.3    58.9    +      -       -      +
     62H  ALA*     3.4    14.6    -      -       +      -
     63H  LEU*     3.9     3.5    -      -       -      +
     28I  GLN*     5.6     3.6    -      -       +      -
     54I  LEU*     4.5     8.3    -      -       +      -
     57I  LEU*     3.2    63.0    -      -       +      -
     58I  ALA*     5.0     0.9    -      -       -      -
     61I  GLU*     2.9    45.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 60 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63G  LEU*     6.2     0.2    -      -       +      -
     24H  PRO*     4.3    13.9    -      -       +      -
     28H  GLN*     3.6    36.3    -      -       +      +
     56H  SER      3.2     8.9    +      -       -      +
     57H  LEU*     4.3     5.2    -      -       -      +
     58H  ALA      3.0     1.2    +      -       -      -
     59H  PHE*     1.3    73.4    -      -       -      +
     61H  GLU*     1.3    60.2    +      -       +      +
     62H  ALA      2.9    10.0    +      -       -      -
     63H  LEU*     2.9    30.9    -      -       -      +
     64H  THR*     3.7     3.1    +      -       -      +
     25I  GLY*     5.6     4.0    -      -       -      +
     28I  GLN*     6.6     0.2    -      -       -      -
     29I  GLY*     6.0     3.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 61 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59G  PHE*     2.9    50.1    -      -       +      +
     62G  ALA*     3.0    22.2    -      -       -      +
     63G  LEU*     3.3    16.9    +      -       +      +
     66G  TYR*     2.6    24.5    +      -       -      +
     24H  PRO*     5.0     0.2    -      -       -      +
     57H  LEU      3.6     3.5    +      -       -      +
     58H  ALA*     2.9    12.7    +      -       -      +
     60H  MET*     1.3    79.8    -      -       -      +
     62H  ALA*     1.3    58.8    +      -       -      +
     64H  THR*     2.8    29.7    +      -       -      -
     65H  ILE*     3.3    10.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 62 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58H  ALA      3.2     4.9    +      -       -      +
     59H  PHE*     3.4    19.5    -      -       +      -
     60H  MET      2.9     0.8    +      -       -      -
     61H  GLU*     1.3    76.7    -      -       -      +
     63H  LEU*     1.3    59.5    +      -       -      +
     65H  ILE*     2.7    38.7    +      -       +      +
     66H  TYR*     2.8    20.6    -      -       +      +
     61I  GLU*     3.0    18.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 63 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20H  ALA*     4.1     1.9    -      -       -      +
     24H  PRO*     3.1    26.2    -      -       +      -
     59H  PHE      3.9     3.4    -      -       -      +
     60H  MET*     2.9    26.7    -      -       -      +
     62H  ALA*     1.3    77.6    -      -       -      +
     64H  THR*     1.3    58.0    +      -       -      +
     66H  TYR*     3.6    21.1    -      -       +      +
     67H  GLY      4.7     0.3    +      -       -      -
     20I  ALA      4.4     1.1    -      -       -      +
     21I  SER*     3.7    19.3    +      -       -      -
     24I  PRO*     3.9    14.4    -      -       +      -
     25I  GLY*     4.3     5.8    -      -       -      +
     60I  MET*     6.2     0.2    -      -       +      -
     61I  GLU*     3.3    24.9    -      -       +      +
     64I  THR*     3.1    45.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 64 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63G  LEU*     3.1    25.2    -      -       +      +
     66G  TYR*     3.5     9.6    -      -       -      -
     20H  ALA*     2.6    44.7    -      -       -      +
     24H  PRO*     3.1    24.2    -      -       +      -
     60H  MET      3.7     4.3    -      -       -      +
     61H  GLU*     2.8    30.0    +      -       -      -
     62H  ALA      3.1     0.2    -      -       -      -
     63H  LEU*     1.3    76.1    -      -       -      +
     65H  ILE*     1.3    65.4    +      -       -      +
     66H  TYR      3.2     1.3    -      -       -      -
     67H  GLY      3.2     4.0    +      -       -      -
     68H  LEU*     3.1    15.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 65 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66G  TYR*     3.3    33.0    -      -       +      +
     61H  GLU*     3.3     9.6    -      -       +      +
     62H  ALA*     2.7    32.3    +      -       +      +
     64H  THR*     1.3    75.3    +      -       -      +
     66H  TYR*     1.3    65.6    +      -       +      +
     67H  GLY      2.9     2.5    -      -       -      -
     68H  LEU*     2.7    14.2    +      -       +      -
     69H  VAL*     2.5    44.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 66 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62H  ALA*     2.8    35.2    -      -       +      +
     63H  LEU*     3.6    17.5    -      -       +      +
     65H  ILE*     1.3    81.0    -      -       +      +
     67H  GLY*     1.3    57.7    +      -       -      +
     69H  VAL*     3.4     7.3    -      -       -      +
     70H  VAL*     3.1    32.4    +      -       -      +
     61I  GLU*     2.7    35.7    +      -       -      +
     64I  THR*     3.5    11.2    -      -       -      -
     65I  ILE*     3.2    28.1    -      -       +      +
     68I  LEU*     3.3    39.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 67 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17H  VAL*     3.0    28.9    -      -       -      -
     20H  ALA*     4.6     2.9    -      -       -      +
     63H  LEU      4.7     1.6    +      -       -      -
     64H  THR      3.2     7.1    +      -       -      -
     65H  ILE      2.9     0.8    +      -       -      -
     66H  TYR*     1.3    77.0    -      -       -      +
     68H  LEU*     1.3    51.7    +      -       -      +
     69H  VAL      2.9     1.3    -      -       -      -
     70H  VAL*     2.7     9.2    +      -       -      -
     71H  ALA      2.3    37.2    +      -       -      -
     18I  GLY*     6.1     2.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 68 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66G  TYR*     3.3    55.2    -      -       +      +
     69G  VAL*     4.8     4.3    -      -       +      -
     70G  VAL*     3.4    32.3    -      -       +      -
     17H  VAL*     4.0     4.4    +      -       -      +
     64H  THR      3.1     7.4    +      -       -      +
     65H  ILE*     2.7    22.8    +      -       +      +
     67H  GLY*     1.3    70.0    -      -       -      +
     69H  VAL*     1.3    56.0    -      -       -      +
     71H  ALA*     3.5     5.4    -      -       +      -
     72H  LEU*     3.1    49.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 69 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65H  ILE*     2.5    35.0    +      -       +      +
     66H  TYR*     3.4    10.8    -      -       -      +
     67H  GLY      2.8     0.2    +      -       -      -
     68H  LEU*     1.3    71.9    -      -       -      +
     70H  VAL*     1.3    63.9    +      -       +      +
     71H  ALA      3.1     0.2    -      -       -      -
     72H  LEU*     3.2     6.0    +      -       -      +
     73H  ALA*     2.7    40.6    +      -       +      +
     68I  LEU*     4.8     4.9    -      -       +      -
     72I  LEU*     4.9     7.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 70 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14H  GLY*     5.6     0.2    -      -       -      -
     17H  VAL*     5.4     5.7    -      -       +      +
     66H  TYR      3.1    17.5    +      -       -      +
     67H  GLY*     2.7     7.8    +      -       -      +
     69H  VAL*     1.3    77.0    -      -       +      +
     71H  ALA*     1.3    64.4    +      -       -      +
     73H  ALA*     3.7     7.2    -      -       -      -
     74H  LEU*     3.1    23.5    +      -       +      +
     14I  GLY      5.6     1.3    -      -       -      -
     15I  LEU*     5.5    13.9    -      -       +      +
     68I  LEU*     3.3    17.7    -      -       +      -
     71I  ALA*     4.5    16.4    -      -       +      +
     72I  LEU*     3.2    33.0    -      -       +      -
     75I  LEU*     4.2    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 71 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70G  VAL*     4.5    15.5    -      -       +      +
     14H  GLY*     4.5    20.8    -      -       -      +
     17H  VAL*     4.2    17.7    -      -       +      +
     67H  GLY      2.3    31.4    +      -       -      +
     68H  LEU*     3.3    22.0    -      -       +      +
     70H  VAL*     1.3    71.4    -      -       -      +
     72H  LEU*     1.3    62.0    +      -       -      +
     74H  LEU*     4.2     2.9    -      -       -      +
     75H  LEU*     3.4    19.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 72 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69G  VAL*     4.9     7.4    -      -       +      -
     70G  VAL*     3.3    28.5    -      -       +      -
     73G  ALA*     5.2     2.0    -      -       +      -
     68H  LEU*     3.1    33.2    +      -       +      +
     69H  VAL*     4.0     3.1    -      -       -      +
     71H  ALA*     1.3    73.9    -      -       -      +
     73H  ALA*     1.3    59.8    +      -       -      +
     74H  LEU      3.2     2.2    -      -       -      -
     75H  LEU*     3.1    21.4    +      -       +      -
     76H  PHE*     2.7    44.5    +      -       +      +
     77H  ALA*     3.4     2.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 73 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69H  VAL*     2.7    29.0    +      -       +      +
     70H  VAL*     3.8    10.8    -      -       -      +
     71H  ALA      3.4     0.2    -      -       -      -
     72H  LEU*     1.3    74.0    -      -       -      +
     74H  LEU*     1.3    56.6    +      -       -      +
     77H  ALA*     3.0    38.8    -      -       +      +
     78H  ASN*     3.2     0.5    +      -       -      -
     72I  LEU*     5.1     2.7    -      -       +      -
     75I  LEU*     4.4     3.4    -      -       +      -
     76I  PHE*     3.5    25.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 74 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10H  VAL*     3.7    21.6    -      -       -      +
     13H  ALA*     6.0     1.1    -      -       +      -
     14H  GLY*     5.1     4.9    -      -       -      +
     70H  VAL*     3.1    20.5    +      -       +      +
     71H  ALA      4.2     2.9    -      -       -      +
     73H  ALA*     1.3    76.7    -      -       -      +
     75H  LEU*     1.3    57.5    +      -       -      +
     78H  ASN*     2.7    32.5    -      -       -      +
     11I  ILE*     4.0    22.7    -      -       +      -
     15I  LEU*     6.4     1.3    -      -       +      -
     75I  LEU*     4.5    12.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 75 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70G  VAL*     4.2    16.6    -      -       +      -
     73G  ALA*     4.5    10.3    -      -       +      +
     74G  LEU*     4.7     5.6    -      -       +      +
     79G  PRO*     3.6    41.2    -      -       +      +
     10H  VAL*     5.3    10.2    +      -       +      +
     11H  ILE*     3.9    26.7    -      -       +      -
     14H  GLY*     6.1     1.5    -      -       -      -
     71H  ALA      3.4    14.0    +      -       -      +
     72H  LEU*     3.1    20.1    +      -       +      +
     74H  LEU*     1.3    82.7    -      -       -      +
     76H  PHE*     1.3    93.6    +      -       +      +
     78H  ASN*     4.1     6.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 76 (chain H). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73G  ALA*     3.6    22.2    -      -       +      -
     77G  ALA*     3.5    33.0    -      -       +      -
     79G  PRO*     3.5    25.6    -      -       +      -
     72H  LEU*     2.7    27.8    +      -       +      +
     75H  LEU*     1.3   100.4    -      -       +      +
     77H  ALA*     1.3    57.0    +      -       -      +
     78H  ASN      3.6     0.9    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il