Contacts of the helix formed by residues 36 - 101 (chain A) in PDB entry 2WCD
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 36 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A ASP 3.9 6.1 - - - +
33A GLN 4.8 1.3 - - - +
34A VAL 3.5 8.5 - - - +
35A ILE* 1.3 80.1 - - + +
37A TRP* 1.3 59.4 + - - +
38A GLN* 3.1 4.9 - - + +
39A THR* 3.2 6.8 + - - +
40A PHE* 2.8 28.5 + - - +
173A ILE* 3.4 37.9 - - + +
176A GLU* 3.5 31.0 - - + +
177A ALA* 3.9 10.8 - - + +
203A VAL* 4.1 11.7 - - + -
207A LEU* 4.5 4.4 - - + +
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Residues in contact with TRP 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A ASP* 6.0 1.1 - - - +
35A ILE* 2.6 25.5 + - + +
36A PRO* 1.3 68.3 - - - +
38A GLN* 1.3 58.1 + - - +
40A PHE* 4.1 21.6 - + - -
41A ASP* 2.7 41.6 + - + +
202A VAL* 5.0 5.2 - - + -
206A LYS* 6.0 6.3 - - + -
207A LEU* 3.5 31.0 - - + -
168B SER 4.8 3.3 + - - -
171B ASP* 4.5 12.1 - - + -
172B LYS* 3.0 66.5 - - + +
175B LYS* 3.6 52.3 - - + +
176B GLU* 6.4 0.2 - - + -
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Residues in contact with GLN 38 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36A PRO* 4.8 2.5 - - + -
37A TRP* 1.3 77.9 - - - +
39A THR* 1.3 59.2 + - - +
41A ASP* 3.8 4.9 - - - +
42A GLU* 2.8 57.0 + - - +
176A GLU* 5.9 0.7 - - - +
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Residues in contact with THR 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36A PRO* 3.2 8.9 + - - +
38A GLN* 1.3 80.1 - - - +
40A PHE* 1.3 56.8 + - - +
42A GLU* 3.8 11.2 + - - +
43A THR* 2.9 28.4 + - - -
169A GLN* 4.3 11.2 + - + +
172A LYS* 3.9 23.0 - - + +
173A ILE* 3.3 32.3 - - + +
176A GLU* 2.9 31.8 + - - -
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Residues in contact with PHE 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36A PRO 2.8 19.9 + - - +
37A TRP* 3.6 26.9 - + - +
39A THR* 1.3 70.4 - - - +
41A ASP* 1.3 71.8 + - - +
43A THR* 2.9 25.5 - - - +
44A ILE* 2.9 24.4 + - + +
173A ILE* 4.1 7.4 - - + +
207A LEU* 3.5 53.8 - - + -
210A GLU* 3.6 24.0 - - + -
211A LEU* 3.4 34.3 - - + -
168B SER* 5.4 12.8 - - - -
171B ASP* 6.6 0.2 - - + -
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Residues in contact with ASP 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A TRP* 2.7 25.3 + - + +
38A GLN* 3.8 5.8 - - - +
40A PHE* 1.3 79.2 - - + +
42A GLU* 1.3 63.4 + - + +
44A ILE* 2.9 20.8 + - - +
45A LYS* 3.0 35.7 + - - +
169B GLN* 5.3 0.4 - - - +
172B LYS* 2.6 35.7 + - - +
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Residues in contact with GLU 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A GLN* 2.8 49.1 + - + +
39A THR* 3.8 9.8 + - - +
41A ASP* 1.3 72.9 - - - +
43A THR* 1.3 62.9 + - - +
45A LYS* 3.2 16.6 + - - +
46A GLU* 3.2 24.1 + - - +
165A TYR* 4.5 2.2 - - - +
169A GLN* 4.9 9.0 + - - +
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Residues in contact with THR 43 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39A THR 2.9 18.3 + - - +
40A PHE 2.9 13.0 - - - +
42A GLU* 1.3 76.8 - - - +
44A ILE* 1.3 65.8 + - - +
46A GLU 3.9 0.2 + - - -
47A LEU* 3.6 24.5 + - + +
165A TYR* 3.7 19.5 + - - -
166A PHE* 5.5 3.2 - - + -
169A GLN* 2.5 36.7 - - - +
173A ILE* 5.1 0.4 - - - -
211A LEU* 3.3 38.6 - - + +
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Residues in contact with ILE 44 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A PHE* 2.9 30.5 + - + +
41A ASP* 2.9 16.3 + - - +
43A THR* 1.3 79.7 - - - +
45A LYS* 1.3 68.5 + - + +
47A LEU* 3.4 8.5 + - - +
48A SER* 2.9 25.5 + - - -
210A GLU 5.1 0.4 - - - +
211A LEU* 4.0 19.7 - - + -
214A LYS* 3.6 46.9 - - + +
168B SER* 4.6 12.8 - - - +
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Residues in contact with LYS 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A ASP* 3.0 35.7 + - - +
42A GLU* 3.2 16.7 + - - +
44A ILE* 1.3 79.2 - - + +
46A GLU* 1.3 55.9 + - - +
48A SER* 2.6 30.7 + - - -
49A ARG* 2.7 15.1 + - - +
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Residues in contact with GLU 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A GLU 3.2 8.6 + - - +
43A THR 4.6 0.2 - - - +
45A LYS* 1.3 78.7 - - - +
47A LEU* 1.3 58.3 + - - +
49A ARG* 2.7 46.9 + - - +
50A PHE* 3.3 19.6 + - - +
162A LYS* 3.2 31.1 + - - +
165A TYR* 3.8 33.7 - - + +
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Residues in contact with LEU 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43A THR* 3.6 17.9 + - + +
44A ILE* 3.4 11.0 + - + +
45A LYS 3.1 0.8 - - - -
46A GLU* 1.3 76.6 - - - +
48A SER* 1.3 67.5 + - - +
50A PHE* 3.6 9.5 - - - +
51A LYS* 3.6 13.5 + - - +
162A LYS* 4.6 17.5 - - + +
165A TYR* 5.0 9.6 - - + -
166A PHE* 4.6 14.6 - - + -
211A LEU* 5.3 3.1 - - + +
214A LYS* 3.6 29.4 - - + -
215A LEU* 4.4 33.2 - - + +
217A SER* 5.9 0.2 - - - +
218A VAL* 3.7 22.1 - - + +
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Residues in contact with SER 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A ILE* 2.9 18.2 + - - -
45A LYS* 2.6 23.1 + - - -
47A LEU* 1.3 73.9 - - - +
49A ARG* 1.3 63.2 + - - -
51A LYS* 3.2 3.4 + - - -
52A GLN* 2.9 21.1 + - - +
161B GLU* 2.5 37.4 + - - +
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Residues in contact with ARG 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A LYS* 2.7 8.8 + - - +
46A GLU* 2.7 64.9 + - - +
48A SER* 1.3 76.0 + - - +
50A PHE* 1.3 62.9 + - - +
52A GLN* 2.9 8.7 + - - +
53A GLU* 2.8 57.4 + - + +
162A LYS* 6.0 2.7 - - - +
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Residues in contact with PHE 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46A GLU 3.3 8.9 + - - +
47A LEU* 3.6 14.8 - - + +
48A SER 3.2 0.6 - - - -
49A ARG* 1.3 83.0 - - - +
51A LYS* 1.3 70.7 + - + +
52A GLN 2.9 0.2 + - - -
53A GLU* 4.1 3.3 - - - -
54A TYR* 3.3 43.3 + + - +
155A LEU* 4.4 7.6 - - + -
158A ASP* 3.8 31.4 - - + -
159A PHE* 3.8 27.4 - + + -
162A LYS* 3.7 31.2 - - + +
218A VAL* 4.0 26.2 - - + -
221A PHE* 4.3 18.4 - + - -
222A PHE* 5.0 6.3 - - + -
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Residues in contact with LYS 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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47A LEU 3.6 7.7 + - - +
48A SER* 3.2 9.6 + - - +
50A PHE* 1.3 87.7 - - + +
52A GLN* 1.3 62.1 + - - +
55A SER* 3.2 21.0 + - - -
217A SER* 3.7 30.1 + - - +
218A VAL* 4.7 7.0 - - + -
221A PHE* 3.7 41.6 - - + -
157B ASN* 4.3 16.8 - - - +
160B SER* 3.9 23.9 + - - -
161B GLU* 3.2 33.4 + - - +
164B SER* 5.6 2.4 - - - -
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Residues in contact with GLN 52 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A SER* 2.9 13.0 + - - +
49A ARG* 2.9 15.7 + - - +
51A LYS* 1.3 74.7 - - - +
53A GLU* 1.3 71.4 + - + +
55A SER* 2.8 17.5 + - - -
56A GLN* 2.9 13.7 + - + +
154B GLN* 4.6 9.0 - - - +
157B ASN* 4.6 6.6 - - - +
158B ASP* 3.4 36.3 + - - +
161B GLU* 4.9 10.5 - - + +
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Residues in contact with GLU 53 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ARG* 2.8 52.0 + - + +
50A PHE* 4.2 3.2 - - - +
52A GLN* 1.3 77.4 - - + +
54A TYR* 1.3 68.9 + - + +
56A GLN* 3.1 10.9 - - - +
57A ALA* 3.1 24.9 + - - +
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Residues in contact with TYR 54 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50A PHE* 3.3 38.0 + + + +
52A GLN 3.2 0.8 - - - -
53A GLU* 1.3 85.9 - - + +
55A SER* 1.3 69.0 + - - +
57A ALA* 3.1 5.0 + - + +
58A ALA* 2.9 27.2 + - - +
151A LEU* 4.3 19.5 - - + -
154A GLN* 3.4 16.8 - - + +
155A LEU* 3.1 47.7 + - + -
158A ASP* 3.0 32.8 + - + +
221A PHE* 4.2 7.9 - - + -
225A LEU* 4.2 13.0 - - + -
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Residues in contact with SER 55 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51A LYS 3.2 15.8 + - - -
52A GLN* 2.8 18.4 + - - -
54A TYR* 1.3 72.2 - - - +
56A GLN* 1.3 65.7 + - - +
58A ALA* 4.0 2.9 - - - +
59A SER* 2.8 32.1 + - - -
221A PHE* 3.9 8.8 - - - -
154B GLN* 3.8 17.3 - - - +
157B ASN* 3.3 36.7 + - - +
158B ASP* 5.2 0.2 + - - -
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Residues in contact with GLN 56 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A GLN* 2.9 11.5 + - + +
53A GLU* 3.1 15.0 - - - +
55A SER* 1.3 79.1 + - - +
57A ALA* 1.3 69.0 + - - +
59A SER* 3.3 1.9 - - - -
60A VAL* 3.1 29.6 + - + +
154B GLN* 3.4 33.1 + - - +
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Residues in contact with ALA 57 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53A GLU 3.1 9.0 + - - +
54A TYR* 3.7 7.2 - - + +
56A GLN* 1.3 83.5 - - + +
58A ALA* 1.3 65.7 + - - +
60A VAL* 3.1 10.2 + - - +
61A LEU* 2.9 22.9 + - - +
151A LEU* 3.5 25.1 - - + -
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Residues in contact with ALA 58 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54A TYR 2.9 17.9 + - - +
55A SER* 4.0 1.8 - - - +
57A ALA* 1.3 73.5 - - - +
59A SER* 1.3 56.1 + - - +
61A LEU* 4.5 3.8 - - - -
62A VAL* 2.7 40.9 + - + +
151A LEU* 4.0 19.8 - - + +
225A LEU* 3.7 28.3 - - + -
228A THR* 5.0 9.6 - - + -
229A VAL* 5.7 0.2 - - + -
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Residues in contact with SER 59 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55A SER* 2.8 24.9 + - - -
56A GLN 3.3 4.5 - - - -
58A ALA* 1.3 75.9 - - - +
60A VAL* 1.3 63.6 + - - +
62A VAL* 3.8 3.8 - - - +
63A GLY* 3.0 17.8 + - - -
149B LEU* 4.5 0.2 - - - +
150B ALA* 4.0 19.5 - - - +
153B SER* 3.4 24.3 + - - -
154B GLN* 3.4 34.7 + - - +
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Residues in contact with VAL 60 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56A GLN* 3.1 23.6 + - + +
57A ALA* 3.1 16.6 - - - +
59A SER* 1.3 78.2 - - - +
61A LEU* 1.3 64.1 + - + +
63A GLY* 3.3 1.4 + - - -
64A ASP* 2.9 46.7 + - - +
150B ALA* 4.4 12.7 - - + +
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Residues in contact with LEU 61 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57A ALA 2.9 11.7 + - - +
58A ALA* 3.8 4.7 - - - +
60A VAL* 1.3 79.7 - - + +
62A VAL* 1.3 66.6 + - + +
63A GLY 2.8 5.4 + - - -
64A ASP* 2.8 14.0 + - + +
65A ILE* 2.8 33.6 + - + +
144A ALA* 4.6 6.1 - - + +
147A LYS* 3.6 38.1 - - + +
148A LEU* 3.4 49.6 - - + +
151A LEU* 4.9 12.3 - - + -
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Residues in contact with VAL 62 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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58A ALA* 2.7 23.9 + - - +
59A SER* 3.8 2.7 - - - +
61A LEU* 1.3 73.7 - - + +
63A GLY* 1.3 59.0 + - - +
65A ILE* 3.6 11.5 - - + +
66A LYS* 3.3 17.0 + - - +
148A LEU* 5.5 6.3 - - + -
228A THR* 3.9 35.9 - - + +
229A VAL* 5.7 0.9 - - + -
232A ALA* 4.9 11.0 - - + -
149B LEU* 3.3 29.4 - - + +
153B SER* 5.0 7.0 - - - +
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Residues in contact with GLY 63 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59A SER 3.0 12.0 + - - -
60A VAL 3.6 4.3 - - - -
61A LEU 2.9 1.4 - - - -
62A VAL* 1.3 76.0 - - - +
64A ASP* 1.3 65.3 + - - +
66A LYS* 3.0 14.2 + - - +
67A THR* 3.1 10.6 + - - -
146B GLY* 3.7 21.8 - - - -
149B LEU* 3.6 18.4 - - - -
150B ALA* 4.7 3.4 - - - -
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Residues in contact with ASP 64 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60A VAL* 2.9 27.8 + - - +
61A LEU* 2.8 15.2 + - + +
63A GLY* 1.3 74.5 - - - +
65A ILE* 1.3 65.2 + - + +
67A THR* 3.1 9.5 + - - -
68A LEU* 2.8 36.7 + - + +
144A ALA* 6.1 2.0 - - + -
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Residues in contact with ILE 65 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61A LEU* 2.8 40.5 + - + +
62A VAL* 3.6 11.7 - - - +
64A ASP* 1.3 72.7 - - + +
66A LYS* 1.3 58.1 + - - +
68A LEU* 3.2 7.3 + - - +
69A LEU* 2.8 39.8 + - + +
141A PHE* 5.2 1.1 - - + -
144A ALA* 3.5 31.0 - - + -
148A LEU* 4.1 15.0 - - + -
232A ALA* 4.4 13.9 - - + -
236A ILE* 3.7 35.2 - - + -
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Residues in contact with LYS 66 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A VAL 3.3 9.3 + - - +
63A GLY* 3.0 11.8 + - - +
65A ILE* 1.3 73.8 - - - +
67A THR* 1.3 68.7 + - - +
69A LEU* 2.9 13.2 + - + +
70A MET* 2.7 49.2 + - + +
145B SER* 3.9 19.7 + - - +
146B GLY* 4.7 0.7 - - - -
149B LEU* 4.4 25.8 - - + +
233B ASN* 3.2 29.9 + - - +
237B ASP* 5.6 2.8 + - - -
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Residues in contact with THR 67 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63A GLY 3.1 6.1 + - - -
64A ASP* 3.3 12.8 - - - +
66A LYS* 1.3 79.1 - - - +
68A LEU* 1.3 62.7 + - + +
70A MET* 3.1 4.8 + - - +
71A ASP* 2.7 51.9 + - - +
142B ASN* 2.8 29.3 + - - +
143B ASN* 3.3 27.2 + - + +
146B GLY* 3.8 5.7 - - - -
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Residues in contact with LEU 68 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A ASP* 2.8 37.3 + - + +
65A ILE* 3.4 9.4 - - - +
67A THR* 1.3 84.5 - - + +
69A LEU* 1.3 63.3 + - - +
71A ASP* 3.3 10.8 + - + +
72A SER* 3.0 18.7 + - - -
140A SER* 3.6 35.1 + - - +
141A PHE* 3.5 32.8 - - + -
144A ALA* 4.0 19.7 - - + -
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Residues in contact with LEU 69 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65A ILE* 2.8 35.1 + - + +
66A LYS* 3.4 12.3 - - + +
68A LEU* 1.3 71.6 - - - +
70A MET* 1.3 64.3 + - + +
72A SER* 3.2 5.2 + - - -
73A GLN* 3.1 21.5 + - - +
141A PHE* 3.2 26.2 - - + -
232A ALA* 6.2 0.2 - - - -
235A ASP* 4.1 35.2 - - + +
236A ILE* 4.3 2.0 - - - -
239A ALA* 3.8 19.1 - - + -
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Residues in contact with MET 70 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A LYS* 2.7 43.0 + - + +
67A THR* 3.5 4.0 - - - +
69A LEU* 1.3 70.1 - - + +
71A ASP* 1.3 67.1 + - - +
73A GLN* 3.4 8.8 + - - +
74A ASP* 3.2 19.8 + - - +
141B PHE 4.9 0.4 - - - +
142B ASN* 3.0 43.1 + - + +
145B SER* 3.4 37.5 - - - +
236B ILE* 5.1 0.9 - - + -
237B ASP* 5.1 7.4 - - - +
240B LYS* 3.5 25.6 + - + +
----------------------------------------------------------
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Residues in contact with ASP 71 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67A THR* 2.7 30.5 + - - +
68A LEU* 3.3 15.4 - - - +
70A MET* 1.3 74.9 - - - +
72A SER* 1.3 64.0 + - - +
74A ASP* 3.3 4.3 + - - +
75A LYS* 3.1 24.4 + - + +
140A SER* 6.1 1.1 - - - +
139B GLN* 4.6 7.0 - - - +
142B ASN* 2.8 28.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 72 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A LEU 3.0 12.4 + - - -
69A LEU 3.2 9.2 + - - -
71A ASP* 1.3 73.6 - - - +
73A GLN* 1.3 67.2 + - - +
75A LYS* 2.7 6.0 + - - +
76A TYR* 2.7 23.3 + - - +
137A SER* 3.2 27.8 + - - -
140A SER* 5.6 0.2 - - - -
141A PHE* 3.7 17.1 - - - -
239A ALA* 4.8 5.7 - - - +
242A LYS* 5.9 1.7 - - - +
243A LEU* 3.5 21.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 73 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A LEU 3.1 9.6 + - - +
70A MET* 3.4 13.2 + - - +
72A SER* 1.3 78.9 - - - +
74A ASP* 1.3 66.9 + - - +
76A TYR* 3.1 9.0 + - - +
77A PHE* 2.8 41.7 + - - +
242A LYS* 3.3 25.6 + - - +
240B LYS* 5.6 1.8 - - - +
----------------------------------------------------------
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Residues in contact with ASP 74 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70A MET 3.2 5.1 + - - +
71A ASP 3.7 7.9 - - - +
72A SER 3.2 0.6 - - - -
73A GLN* 1.3 84.7 + - - +
75A LYS* 1.3 57.9 + - - +
77A PHE* 3.1 11.0 + - - +
78A GLU* 2.9 29.9 + - - +
135B LEU* 4.3 9.8 - - + +
138B SER* 3.1 20.3 + - - -
139B GLN* 3.5 32.9 + - + +
142B ASN* 3.9 1.4 + - - +
240B LYS* 3.1 33.4 + - - -
244B THR* 4.9 7.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 75 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A ASP 3.1 14.5 + - - +
72A SER 2.7 13.7 + - - +
74A ASP* 1.3 73.0 - - - +
76A TYR* 1.3 59.5 + - - +
78A GLU* 3.6 16.7 + - - +
79A ALA* 3.0 24.8 + - - +
133A SER* 3.6 34.8 + - - +
134A LEU* 4.1 3.7 - - + +
136A VAL* 4.5 16.4 - - + -
137A SER* 4.3 16.2 - - - +
139B GLN* 4.0 21.7 - - + +
----------------------------------------------------------
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Residues in contact with TYR 76 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A SER* 2.7 15.0 + - - +
73A GLN* 3.3 17.9 - - - +
75A LYS* 1.3 71.2 - - - +
77A PHE* 1.3 70.6 + - - +
79A ALA* 3.1 2.4 + - - +
80A THR* 2.8 43.9 + - + +
134A LEU* 3.8 22.4 - - + +
242A LYS* 3.6 45.5 - - + +
243A LEU* 4.1 14.3 - - + +
246A GLU* 3.4 31.1 + - + +
292A HIS* 3.3 24.4 + - - -
----------------------------------------------------------
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Residues in contact with PHE 77 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A GLN* 2.8 24.4 + - - +
74A ASP* 3.3 13.5 - - - +
76A TYR* 1.3 79.5 - - - +
78A GLU* 1.3 67.3 + - - +
80A THR* 2.7 8.5 + - - -
81A GLN* 2.7 60.5 + - + +
135B LEU* 4.1 11.2 - - + -
244B THR* 3.6 44.0 - - + -
247B ILE* 3.7 39.5 - - + -
248B ALA* 4.6 5.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 78 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74A ASP 2.9 16.3 + - - +
75A LYS* 3.6 21.0 + - - +
77A PHE* 1.3 84.2 - - - +
79A ALA* 1.3 66.4 + - - +
81A GLN* 3.5 2.8 - - - +
82A THR* 2.7 35.8 + - - +
133A SER* 3.7 20.2 + - - -
132B LYS* 5.9 2.4 - - - +
135B LEU* 3.2 33.3 - - + +
139B GLN* 5.0 3.7 + - - -
----------------------------------------------------------
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Residues in contact with ALA 79 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A LYS 3.0 16.7 + - - +
76A TYR 3.4 3.1 - - - +
78A GLU* 1.3 82.0 + - - +
80A THR* 1.3 63.2 + - - +
82A THR* 3.4 6.0 + - - -
83A VAL* 3.1 27.2 + - - +
130A ALA* 4.0 21.7 - - + +
133A SER* 5.0 4.3 - - - -
134A LEU* 3.7 32.1 - - + -
250A ILE* 5.1 1.1 - - + -
----------------------------------------------------------
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Residues in contact with THR 80 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A TYR* 2.8 55.5 + - + +
77A PHE* 2.7 26.3 + - - -
79A ALA* 1.3 71.6 - - + +
81A GLN* 1.3 52.7 + - - +
83A VAL* 3.1 9.4 + - - +
84A TYR* 2.8 36.1 + - - +
246A GLU* 3.7 20.2 - - + +
250A ILE* 5.4 0.4 - - - -
288A TYR* 4.5 5.1 + - - -
292A HIS* 3.9 13.5 - - - +
----------------------------------------------------------
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Residues in contact with GLN 81 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PHE* 2.7 52.6 + - + +
78A GLU* 3.5 5.2 - - - +
80A THR* 1.3 73.1 + - - +
82A THR* 1.3 65.1 + - - +
84A TYR* 3.0 27.2 + - - +
85A GLU* 2.6 60.8 + - - +
131B GLN* 4.4 1.9 + - - -
247B ILE* 4.9 3.7 - - + +
248B ALA* 3.3 36.5 + - + +
251B GLY* 4.9 1.2 - - - -
----------------------------------------------------------
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Residues in contact with THR 82 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A GLU* 2.7 30.3 + - - +
79A ALA* 3.4 8.0 - - - +
81A GLN* 1.3 74.3 + - - +
83A VAL* 1.3 67.1 + - + +
85A GLU* 3.3 16.0 + - - +
86A TRP* 3.3 17.5 + - - +
126A LYS* 4.4 37.3 - - + +
130A ALA* 5.2 2.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 83 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ALA 3.3 13.5 - - - +
80A THR 3.1 8.1 + - - +
82A THR* 1.3 76.3 - - + +
84A TYR* 1.3 59.4 + - - +
85A GLU 2.9 1.2 + - - -
86A TRP* 3.0 4.1 + - - -
87A CYS* 2.7 43.0 + - + +
126A LYS* 6.3 0.4 - - - -
127A LEU* 3.4 35.0 - - + -
130A ALA* 4.0 16.8 - - + -
250A ILE* 4.0 14.8 - - + -
253A ILE* 4.5 7.2 - - + -
288A TYR* 3.8 28.0 - - + +
----------------------------------------------------------
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Residues in contact with TYR 84 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A THR 2.8 15.9 + - - +
81A GLN* 3.5 30.3 - - + +
83A VAL* 1.3 73.8 - - - +
85A GLU* 1.3 67.7 + - + +
87A CYS* 4.1 7.2 - - - +
88A GLY* 3.5 14.7 + - - -
288A TYR* 5.4 3.1 - - + -
289A GLN* 3.7 35.1 + - - +
248B ALA 6.1 0.4 - - - -
251B GLY 6.4 0.9 - - - -
252B GLU* 4.1 29.0 + - - -
255B THR* 5.1 4.5 - - + +
----------------------------------------------------------
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Residues in contact with GLU 85 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A GLN* 2.6 43.3 + - - +
82A THR* 3.3 13.8 + - - +
83A VAL 2.9 1.0 + - - -
84A TYR* 1.3 79.6 - - + +
86A TRP* 1.3 63.5 + - - +
88A GLY* 3.2 8.7 + - - -
89A VAL* 3.2 15.7 + - - +
126A LYS* 5.7 3.8 + - - +
131B GLN* 2.8 29.3 + - - +
251B GLY* 3.5 8.1 - - - -
254B LYS* 3.6 29.4 + - + +
255B THR* 3.7 27.4 - - + +
258B GLU* 5.6 4.9 - - - +
----------------------------------------------------------
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Residues in contact with TRP 86 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A THR 3.3 7.2 + - - +
83A VAL* 3.0 8.1 + - - +
85A GLU* 1.3 73.9 - - - +
87A CYS* 1.3 87.5 + - + +
88A GLY 2.5 17.2 + - - -
89A VAL* 3.1 15.4 - - + +
90A ALA* 2.9 38.9 + - + +
119A VAL* 2.8 35.9 + - + +
120A LEU* 4.7 2.7 - - + -
122A ASP* 4.1 13.0 - - - -
123A GLY* 3.0 32.1 - - - -
126A LYS* 4.1 21.9 - - + +
127A LEU* 4.2 17.3 - - + -
253A ILE* 4.1 20.0 - - + -
257A THR* 3.6 31.2 - - + -
281A MET* 4.0 15.3 - - + -
258B GLU* 5.5 0.4 - - - -
----------------------------------------------------------
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Residues in contact with CYS 87 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A VAL* 2.7 26.3 + - + +
84A TYR* 4.2 6.7 - - - +
86A TRP* 1.3 93.8 - - + +
88A GLY* 1.3 55.6 + - - +
90A ALA* 4.2 3.8 - - - +
91A THR* 3.1 25.1 + - - -
253A ILE* 3.7 31.0 - - - -
285A CYS* 3.7 35.0 - - - +
288A TYR* 4.6 7.6 - - - -
289A GLN* 4.8 4.7 - - - +
----------------------------------------------------------
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Residues in contact with GLY 88 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84A TYR 3.5 8.7 + - - -
85A GLU 3.2 7.5 + - - -
86A TRP 2.5 8.5 + - - -
87A CYS* 1.3 75.3 - - - +
89A VAL* 1.3 63.8 + - - +
90A ALA 3.2 0.4 - - - -
91A THR* 3.7 8.1 + - - -
92A GLN* 3.5 21.3 + - - +
255B THR* 5.4 3.8 - - - -
----------------------------------------------------------
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Residues in contact with VAL 89 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A GLU 3.2 14.6 + - - +
86A TRP* 3.1 29.8 - - + +
88A GLY* 1.3 70.8 - - - +
90A ALA* 1.3 65.0 + - - +
92A GLN* 3.2 9.5 + - - +
93A LEU* 3.2 31.5 + - + +
119A VAL* 4.5 4.0 - - + -
255B THR* 4.3 11.2 - - - +
258B GLU* 4.6 17.7 - - + +
259B THR* 3.5 37.7 - - - +
262B PHE* 4.4 12.6 - - + -
----------------------------------------------------------
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Residues in contact with ALA 90 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A TRP* 2.9 47.9 + - + +
87A CYS 4.2 5.6 - - - +
89A VAL* 1.3 78.8 - - - +
91A THR* 1.3 63.1 + - - +
93A LEU* 2.8 13.9 + - - +
94A LEU* 2.9 28.6 + - + +
119A VAL* 3.9 15.9 - - + -
281A MET* 5.0 1.1 - - + -
----------------------------------------------------------
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Residues in contact with THR 91 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A CYS 3.1 18.4 + - - -
88A GLY* 3.7 5.8 + - - -
89A VAL 3.4 1.0 - - - -
90A ALA* 1.3 76.9 - - - +
92A GLN* 1.3 60.0 + - + +
94A LEU* 3.5 8.5 + - - +
95A ALA* 2.9 31.8 + - + +
282A ILE* 3.5 32.0 - - + +
285A CYS* 3.7 21.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 92 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88A GLY 3.5 15.4 + - - +
89A VAL* 3.4 7.4 - - - +
91A THR* 1.3 79.4 - - + +
93A LEU* 1.3 56.9 + - - +
95A ALA* 3.4 7.0 + - - +
96A ALA* 2.9 29.1 + - - +
255B THR* 5.2 1.8 + - - -
256B GLU* 3.6 25.1 + - - +
259B THR* 3.3 32.4 + - + +
263B TYR* 3.7 21.0 + - - +
280B LYS* 4.5 12.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 93 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A VAL* 3.2 14.1 + - + +
90A ALA* 2.8 13.8 + - - +
92A GLN* 1.3 69.5 - - - +
94A LEU* 1.3 59.9 + - - +
95A ALA 3.1 1.1 - - - -
96A ALA* 3.1 5.7 + - + +
97A TYR* 2.8 30.1 + - - +
112A GLN* 4.9 2.6 + - - -
115A ILE* 3.9 18.4 - - + -
116A LEU* 5.3 3.4 - - + -
119A VAL* 3.9 23.8 - - + -
259B THR* 4.3 9.0 - - + -
262B PHE* 3.3 46.7 - - + -
263B TYR* 3.3 36.6 - - + -
266B TYR* 5.0 1.1 + - + -
----------------------------------------------------------
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Residues in contact with LEU 94 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ALA* 2.9 44.9 + - + +
91A THR* 3.9 5.8 - - - +
93A LEU* 1.3 73.9 - - + +
95A ALA* 1.3 58.0 + - - +
97A TYR* 3.3 5.5 + - + +
98A ILE* 2.9 36.6 + - - +
116A LEU* 4.0 22.9 - - + -
119A VAL* 5.5 2.0 - - + -
120A LEU* 4.6 10.5 - - + -
260A THR* 5.0 3.8 - - + -
278A ALA* 4.1 31.6 - - + +
281A MET* 3.9 33.7 - - + -
282A ILE* 4.0 15.3 - - + -
----------------------------------------------------------
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Residues in contact with ALA 95 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A THR* 2.9 22.3 + - + +
92A GLN* 3.4 8.7 - - - +
94A LEU* 1.3 76.4 - - - +
96A ALA* 1.3 61.4 + - - +
98A ILE* 3.4 7.2 + - - +
99A LEU* 3.1 22.5 + - - +
282A ILE* 4.0 13.9 - - + +
----------------------------------------------------------
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Residues in contact with ALA 96 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A GLN 2.9 14.9 + - - +
93A LEU* 3.4 10.8 - - + +
95A ALA* 1.3 74.0 - - - +
97A TYR* 1.3 56.2 + - - +
99A LEU* 2.9 7.6 + - - +
100A LEU* 2.7 37.4 + - + +
263B TYR* 4.3 8.3 - - + +
266B TYR* 4.1 12.1 - - - +
273B LEU* 3.7 30.5 - - + -
----------------------------------------------------------
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Residues in contact with TYR 97 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A LEU 2.8 17.1 + - - +
94A LEU* 3.5 11.4 - - - +
96A ALA* 1.3 71.3 - - - +
98A ILE* 1.3 66.5 + - + +
101A PHE* 3.2 29.0 + + + +
112A GLN* 3.2 43.6 + - + +
116A LEU* 4.0 19.1 - - + -
269A LEU* 2.9 36.7 + - + -
274A LEU* 2.8 32.3 - - + +
275A LYS* 3.1 32.6 + - + +
278A ALA* 3.8 24.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 98 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A LEU 2.9 23.1 + - - +
95A ALA* 3.5 8.7 - - - +
97A TYR* 1.3 85.6 - - + +
99A LEU* 1.3 61.5 + - - +
101A PHE 4.1 2.3 - - - +
102A ASP* 3.9 14.4 + - - +
275A LYS* 3.5 52.3 + - + +
278A ALA* 3.8 6.3 - - + -
279A LYS* 3.8 28.0 - - + -
282A ILE* 4.9 6.5 - - + -
----------------------------------------------------------
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Residues in contact with LEU 99 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A ALA 3.1 13.2 + - - +
96A ALA* 2.9 11.8 + - - +
98A ILE* 1.3 76.2 - - - +
100A LEU* 1.3 83.1 + - + +
101A PHE 3.0 5.7 + - - -
102A ASP* 3.2 18.7 + - + +
273B LEU* 4.9 15.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 100 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A ALA 2.7 22.7 + - - +
99A LEU* 1.3 92.7 - - + +
101A PHE* 1.3 73.6 - - + +
102A ASP 3.5 0.7 - - - -
103A GLU 3.6 10.6 - - - +
105A ASN* 3.7 18.0 + - - +
108A LYS* 4.0 15.0 - - + +
112A GLN* 4.5 1.6 - - - +
266B TYR* 3.7 33.4 - - + -
271B LEU* 4.0 24.0 - - + -
273B LEU* 4.6 9.9 - - + -
----------------------------------------------------------
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Residues in contact with PHE 101 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A TYR* 3.2 28.5 + + + +
98A ILE 4.1 4.0 - - - -
99A LEU 3.0 1.2 + - - -
100A LEU* 1.3 89.4 - - + +
102A ASP* 1.3 66.8 + - - +
103A GLU 3.3 5.2 - - - -
104A TYR* 4.1 15.0 - + - -
105A ASN* 3.6 37.7 - - + -
108A LYS* 3.9 6.5 - - + -
109A ALA* 3.5 29.4 - - + -
112A GLN* 3.6 29.4 - - + -
269A LEU* 3.5 29.4 - - + +
270A MET* 3.4 9.5 - - - +
275A LYS* 3.0 21.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il