Contacts of the helix formed by residues 150 - 187 (chain C) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 150 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144C PHE* 3.3 7.1 - - - -
149C VAL* 1.3 80.5 - - - +
151C ILE* 1.3 67.1 + - + +
152C THR* 3.1 23.6 - - + +
153C ASP* 3.4 18.5 + - - +
154C VAL 4.2 1.4 + - - -
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Residues in contact with ILE 151 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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357A ALA* 5.2 2.0 - - + -
144C PHE* 3.2 42.9 - - + -
150C ALA* 1.3 73.4 - - + +
152C THR* 1.3 69.2 + - + +
154C VAL* 2.9 17.9 + - + +
155C GLN* 2.9 49.8 + - + +
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Residues in contact with THR 152 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A SER* 5.2 1.1 + - - -
357A ALA* 3.8 26.5 - - + -
358A MET* 4.0 30.3 - - + +
367A SER* 4.5 6.1 - - - +
150C ALA* 3.6 15.0 - - + +
151C ILE* 1.3 85.9 - - + +
153C ASP* 1.3 66.7 + - - +
155C GLN* 4.2 8.3 - - - -
156C ASN* 2.8 34.5 + - - +
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Residues in contact with ASP 153 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140C THR* 3.5 15.5 + - - +
149C VAL* 3.9 20.0 - - + +
150C ALA* 3.4 16.9 + - - +
151C ILE 3.1 1.0 - - - -
152C THR* 1.3 85.4 + - - +
154C VAL* 1.3 61.4 + - - +
156C ASN* 4.0 1.2 - - - +
157C ALA* 3.4 18.7 + - - +
362C TYR* 2.4 41.6 + - - +
369C ILE* 3.7 21.8 + - + +
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Residues in contact with VAL 154 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C LEU* 3.9 4.1 - - + +
140C THR* 3.3 38.1 - - - +
141C THR* 3.7 21.1 - - + +
144C PHE* 3.8 23.6 - - + -
150C ALA 4.7 0.7 - - - +
151C ILE* 2.9 16.6 + - + +
153C ASP* 1.3 77.2 - - - +
155C GLN* 1.3 65.1 + - + +
156C ASN 3.2 0.2 - - - -
157C ALA 3.6 0.3 + - - -
158C ARG* 3.1 34.5 + - + +
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Residues in contact with GLN 155 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350A SER* 4.4 2.9 - - - +
353A SER* 3.6 32.4 + - - -
354A SER* 4.0 15.4 + - - +
357A ALA* 3.2 29.5 - - - +
151C ILE* 2.9 40.3 + - + +
152C THR* 3.3 6.0 + - - +
154C VAL* 1.3 77.5 - - + +
156C ASN* 1.3 57.9 + - - +
158C ARG* 3.8 5.7 - - - +
159C ALA* 3.2 26.2 + - - +
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Residues in contact with ASN 156 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A SER* 4.2 12.5 + - - +
358A MET* 5.5 7.4 - - - +
371A ASP* 5.1 5.7 + - - -
152C THR* 2.8 19.8 + - - +
153C ASP 4.0 3.6 - - - +
155C GLN* 1.3 74.2 - - - +
157C ALA* 1.3 66.0 + - - +
158C ARG 3.0 2.1 + - - -
159C ALA* 3.2 5.4 + - - +
160C GLN* 3.0 45.4 + - - +
369C ILE* 4.5 11.1 - - + +
370C VAL* 4.1 23.9 - - - +
373C LEU* 3.6 5.6 - - - +
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Residues in contact with ALA 157 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133C ILE* 3.7 7.1 - - - +
136C GLN 4.6 0.4 - - - +
137C LEU* 3.4 35.2 - - + +
140C THR* 4.4 7.6 - - + +
153C ASP 3.4 15.4 + - - +
156C ASN* 1.3 79.8 + - - +
158C ARG* 1.3 60.4 + - - +
160C GLN 4.1 0.4 - - - -
161C TYR* 3.2 21.7 + - - +
369C ILE* 4.7 1.1 - - + -
373C LEU* 3.7 27.3 - - + +
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Residues in contact with ARG 158 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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346A GLN* 4.6 6.1 + - - -
350A SER* 4.8 5.6 - - - -
134C TYR* 5.7 2.4 - - - -
137C LEU* 3.4 33.4 - - + +
154C VAL* 3.1 33.0 + - + +
155C GLN* 3.8 7.4 - - - +
156C ASN 3.0 0.6 - - - -
157C ALA* 1.3 75.8 - - - +
159C ALA* 1.3 66.0 - - - +
161C TYR* 2.9 25.7 + - - +
162C ASP* 3.0 43.7 + - - +
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Residues in contact with ALA 159 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347A ALA* 5.3 0.9 - - - +
350A SER* 3.6 34.0 + - - +
351A ALA* 4.6 6.1 - - + +
354A SER* 4.6 6.5 - - - +
378A THR* 5.5 7.9 - - + -
155C GLN 3.2 15.4 + - - +
156C ASN* 3.2 7.0 + - - +
158C ARG* 1.3 78.2 - - - +
160C GLN* 1.3 64.0 + - + +
161C TYR 3.0 1.4 + - - -
162C ASP* 3.1 5.7 + - - +
163C THR* 3.1 21.8 + - - -
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Residues in contact with GLN 160 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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133C ILE* 3.7 15.2 - - + +
156C ASN* 3.0 34.6 + - - +
157C ALA 4.5 0.9 - - - +
159C ALA* 1.3 76.9 - - + +
161C TYR* 1.3 60.6 + - - +
163C THR* 3.8 12.5 - - + +
164C VAL* 3.2 26.3 + - - +
370C VAL* 5.4 4.8 - - - +
373C LEU* 3.3 43.6 - - + +
374C ASP* 4.1 11.2 + - - +
377C THR* 4.3 7.6 + - - -
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Residues in contact with TYR 161 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130C LYS* 3.6 45.2 - - + +
133C ILE* 3.7 26.5 - - + +
134C TYR* 3.8 31.3 - + + +
137C LEU* 4.7 4.9 - - + -
157C ALA 3.2 15.7 + - - +
158C ARG* 2.9 31.5 + - - +
160C GLN* 1.3 76.5 - - - +
162C ASP* 1.3 73.8 + - - +
164C VAL* 3.1 14.6 + - + +
165C LEU* 3.1 38.2 + - + +
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Residues in contact with ASP 162 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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343A ALA* 4.8 5.0 - - - +
346A GLN* 2.7 43.6 - - + +
347A ALA* 4.2 9.4 - - + -
350A SER* 2.9 23.7 + - - +
158C ARG* 3.0 34.8 + - - +
159C ALA 3.1 7.2 + - - +
161C TYR* 1.3 82.0 - - - +
163C THR* 1.3 63.1 + - - +
165C LEU* 3.1 25.3 + - - +
166C ALA* 3.1 12.8 + - - +
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Residues in contact with THR 163 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A TYR* 5.7 4.0 - - - -
347A ALA* 4.7 11.8 - - - +
378A THR* 5.3 8.3 - - - +
382A ALA* 6.0 1.0 - - - +
159C ALA 3.1 14.3 + - - -
160C GLN* 3.8 14.6 - - + +
161C TYR 3.1 0.2 - - - -
162C ASP* 1.3 74.2 - - - +
164C VAL* 1.3 72.5 + - + +
166C ALA* 3.1 18.9 + - - +
167C ASN* 3.3 21.8 + - - +
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Residues in contact with VAL 164 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126C THR* 3.9 16.2 - - + +
129C GLN* 3.9 21.3 - - + +
130C LYS* 3.7 36.3 - - + +
133C ILE* 3.7 21.8 - - + -
160C GLN 3.2 12.7 + - - +
161C TYR* 3.1 11.2 + - + +
163C THR* 1.3 85.6 - - + +
165C LEU* 1.3 57.4 + - - +
167C ASN* 3.1 12.9 + - + +
168C GLU* 2.8 26.0 + - + +
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Residues in contact with LEU 165 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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343A ALA* 4.7 6.7 - - + -
130C LYS* 3.3 36.3 - - + +
161C TYR* 3.1 38.6 + - + +
162C ASP* 3.1 17.5 - - - +
163C THR 3.0 0.6 - - - -
164C VAL* 1.3 72.5 - - - +
166C ALA* 1.3 62.5 + - - +
167C ASN 3.0 5.2 - - - -
168C GLU* 3.2 14.9 + - - +
169C LEU* 2.9 24.4 + - - +
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Residues in contact with ALA 166 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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340A SER* 4.5 2.0 + - - -
343A ALA* 3.7 26.2 - - + +
344A TYR* 3.6 38.5 + - + +
347A ALA* 5.9 0.9 - - + -
162C ASP 3.1 6.4 + - - +
163C THR* 3.1 12.6 + - - +
165C LEU* 1.3 79.2 - - - +
167C ASN* 1.3 60.4 + - - +
169C LEU* 3.4 8.7 - - - +
170C THR* 3.3 23.4 - - - +
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Residues in contact with ASN 167 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A TYR* 4.2 10.7 + - - -
126C THR* 4.4 8.5 - - + +
129C GLN* 5.9 1.0 + - - -
163C THR* 3.5 22.4 + - - +
164C VAL* 3.3 15.4 - - + +
165C LEU 3.0 0.2 - - - -
166C ALA* 1.3 78.1 - - - +
168C GLU* 1.3 63.8 + - - +
169C LEU 2.7 5.5 + - - -
170C THR* 2.8 9.5 + - - -
171C ALA* 2.7 26.8 + - + +
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Residues in contact with GLU 168 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123C LEU* 3.9 11.1 - - + +
126C THR* 3.4 27.9 - - + +
127C GLN* 3.9 15.1 + - + -
130C LYS* 3.0 31.4 + - + +
164C VAL* 2.8 19.4 + - + +
165C LEU* 3.8 20.1 - - + +
167C ASN* 1.3 71.3 - - - +
169C LEU* 1.3 63.5 + - - +
171C ALA* 4.0 2.7 - - - -
172C ARG* 2.6 52.6 + - - +
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Residues in contact with LEU 169 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A ALA* 3.6 24.4 - - + +
339A SER* 3.0 54.5 - - - +
340A SER* 3.1 13.2 - - - +
343A ALA* 4.4 9.4 - - + -
165C LEU 2.9 16.3 + - - +
166C ALA 3.4 4.7 - - - +
167C ASN 2.7 0.6 + - - -
168C GLU* 1.3 82.6 + - - +
170C THR* 1.3 95.2 + - + +
172C ARG* 3.4 7.0 + - - +
173C ASN* 3.3 15.4 + - - +
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Residues in contact with THR 170 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A ALA* 5.6 0.4 - - - -
340A SER* 4.4 7.0 - - - +
344A TYR* 5.6 3.1 - - + +
166C ALA 3.3 13.9 - - - +
167C ASN* 2.8 13.0 + - - -
169C LEU* 1.3 88.0 - - + +
171C ALA* 1.3 57.8 + - - -
172C ARG 2.9 4.9 - - - -
173C ASN* 2.7 29.4 + - - +
174C ASN* 2.9 23.8 + - - -
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Residues in contact with ALA 171 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119C ALA 4.2 8.8 - - - +
122C VAL* 3.7 28.3 - - + +
123C LEU* 4.1 18.1 - - + +
126C THR* 4.2 11.0 - - - +
167C ASN* 2.7 20.4 + - + +
168C GLU* 4.1 2.9 - - - +
170C THR* 1.3 75.0 + - - +
172C ARG* 1.3 59.3 + - - +
174C ASN* 3.7 9.2 + - - +
175C LEU* 3.4 18.7 + - - +
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Residues in contact with ARG 172 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123C LEU* 3.9 14.1 - - + +
127C GLN* 3.8 19.9 - - - +
168C GLU* 2.6 50.3 + - - +
169C LEU* 3.6 7.6 + - - +
170C THR 2.9 0.6 - - - -
171C ALA* 1.3 76.5 - - - +
173C ASN* 1.3 65.8 + - - +
174C ASN 3.2 1.8 - - - -
175C LEU* 3.5 3.4 + - - +
176C ASP* 3.4 24.0 + - - +
427C PRO* 3.0 51.5 + - + +
428C GLU* 4.2 9.3 + - - -
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Residues in contact with ASN 173 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A ASN* 3.3 33.4 - - - +
333A ASN* 3.2 21.2 + - - -
336A ALA* 3.3 24.4 - - + +
169C LEU 3.3 8.2 + - - +
170C THR* 2.7 13.8 + - - +
172C ARG* 1.3 78.9 - - - +
174C ASN* 1.3 66.4 + - - +
176C ASP* 3.2 10.8 - - - +
177C ASN* 3.0 33.4 + - - +
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Residues in contact with ASN 174 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119C ALA* 4.5 6.5 - - + -
122C VAL* 6.6 0.2 - - + -
170C THR* 2.9 25.0 + - - +
171C ALA* 3.9 9.3 - - - +
173C ASN* 1.3 88.7 - - - +
175C LEU* 1.3 59.6 + - - +
176C ASP 3.0 1.6 - - - -
177C ASN* 3.7 7.1 - - - +
178C ALA* 2.8 33.0 + - - +
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Residues in contact with LEU 175 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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116C VAL* 3.6 18.8 - - + +
119C ALA* 3.7 15.7 - - + +
120C ILE* 3.3 38.1 - - + +
123C LEU* 4.2 9.9 - - + -
171C ALA 3.4 12.8 + - - +
172C ARG* 3.9 9.0 - - - +
173C ASN 3.4 0.4 - - - -
174C ASN* 1.3 77.6 - - - +
176C ASP* 1.3 62.2 + - - +
178C ALA* 3.6 1.0 - - - +
179C VAL* 3.2 23.4 + - - +
424C SER 5.2 0.7 - - - +
425C THR* 3.0 31.2 - - - +
426C ASN 4.4 0.7 - - - -
427C PRO* 3.8 26.7 - - + -
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Residues in contact with ASP 176 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A ASN* 3.6 25.9 + - - +
172C ARG* 3.4 13.9 + - - +
173C ASN* 3.2 14.0 - - - +
174C ASN 3.0 0.2 - - - -
175C LEU* 1.3 75.0 - - - +
177C ASN* 1.3 56.5 + - - +
178C ALA 2.9 3.8 - - - -
179C VAL* 2.7 31.0 + - - +
180C GLU* 3.1 10.8 + - - +
425C THR 4.9 1.7 - - - +
427C PRO* 3.8 25.4 - - - +
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Residues in contact with ASN 177 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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329A SER* 3.7 20.3 + - - +
332A ASN* 3.2 24.9 - - - +
333A ASN* 3.0 29.9 + - - +
173C ASN* 3.0 25.0 + - - +
174C ASN* 3.7 8.2 - - - +
176C ASP* 1.3 78.9 - - - +
178C ALA* 1.3 56.6 + - - +
179C VAL 3.3 0.2 - - - -
180C GLU* 3.6 8.4 + - - +
181C GLN* 3.1 34.3 + - - +
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Residues in contact with ALA 178 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C ALA 4.3 2.3 - - - +
115C ASN* 4.1 15.7 - - + +
116C VAL* 3.0 21.9 - - + +
119C ALA* 4.0 18.8 - - + -
174C ASN 2.8 20.3 + - - +
175C LEU 3.6 6.5 - - - +
176C ASP 2.9 0.2 - - - -
177C ASN* 1.3 77.6 - - - +
179C VAL* 1.3 62.4 + - - +
181C GLN* 3.4 21.3 - - - +
182C LEU 3.5 2.6 + - - -
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Residues in contact with VAL 179 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116C VAL* 3.9 27.6 - - + -
175C LEU* 3.2 16.2 - - + +
176C ASP* 2.7 10.0 + - - +
178C ALA* 1.3 76.8 - - - +
180C GLU* 1.3 60.6 + - - +
181C GLN 3.1 1.8 - - - -
182C LEU* 3.3 6.1 + - + +
183C ARG* 2.8 25.8 + - - +
188C ASN 5.0 0.2 - - - +
189C TYR* 4.1 23.8 - - + -
190C TYR* 5.1 10.1 - - + +
425C THR* 4.1 25.6 - - + +
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Residues in contact with GLU 180 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325A GLN* 3.7 26.8 - - + +
328A ARG* 2.8 49.0 + - + +
329A SER* 4.2 7.0 - - - +
332A ASN* 4.2 15.5 + - - +
176C ASP 3.1 15.0 + - - +
177C ASN* 3.8 11.4 - - - +
179C VAL* 1.3 77.8 - - - +
181C GLN* 1.3 61.7 - - - +
183C ARG* 3.4 5.2 + - - +
184C GLN* 3.1 23.4 + - - +
189C TYR* 3.0 27.4 + - - -
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Residues in contact with GLN 181 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A GLN* 3.6 26.1 - - - +
329A SER* 4.9 0.6 + - - -
112C ALA* 4.8 11.0 - - + +
115C ASN* 6.3 3.1 - - + +
177C ASN* 3.1 27.9 + - - +
178C ALA* 3.4 13.7 - - - +
180C GLU* 1.3 76.0 - - - +
182C LEU* 1.3 66.9 + - - +
184C GLN* 3.2 23.3 + - - +
185C ILE* 3.2 16.8 + - + +
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Residues in contact with LEU 182 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6C VAL* 4.3 9.2 - - + -
109C THR* 4.1 5.8 - - - +
112C ALA* 3.4 27.8 - - + +
113C TYR* 3.5 19.3 - - + +
116C VAL* 4.2 10.3 - - + -
178C ALA 3.5 9.2 + - - +
179C VAL* 3.3 10.8 + - + +
181C GLN* 1.3 79.3 - - - +
183C ARG* 1.3 65.2 + - - +
185C ILE* 3.1 3.0 + - - +
186C THR* 2.9 45.0 + - + +
188C ASN 5.4 0.4 - - - +
190C TYR* 4.0 25.6 - - + -
193C LEU* 4.2 24.2 - - + -
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Residues in contact with ARG 183 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320A HIS* 5.0 5.9 + - - -
321A ARG* 3.9 30.3 + - - +
324A VAL* 3.7 37.2 - - + +
325A GLN* 5.1 1.1 - - + +
179C VAL 2.8 17.8 + - - +
180C GLU* 3.5 9.0 - - - +
182C LEU* 1.3 75.4 - - - +
184C GLN* 1.3 60.2 + - - +
187C GLY* 2.5 55.1 + - - -
188C ASN 3.0 28.8 + - - +
189C TYR* 3.4 41.4 - - + +
----------------------------------------------------------
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Residues in contact with GLN 184 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A SER 4.9 1.0 + - - -
321A ARG* 3.1 38.9 + - + +
322A SER* 3.4 36.0 + - - +
325A GLN* 3.6 28.8 + - + +
15C PRO* 5.0 1.0 - - - +
16C GLU* 5.1 5.9 - - - +
180C GLU 3.1 13.1 + - - +
181C GLN* 3.6 16.6 - - - +
183C ARG* 1.3 86.1 - - - +
185C ILE* 1.3 59.3 + - + +
----------------------------------------------------------
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Residues in contact with ILE 185 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG* 3.3 9.9 + - - -
10C ALA* 3.7 5.2 - - - +
14C ASN* 3.1 36.2 + - - +
16C GLU* 5.6 1.3 - - - -
105C LEU* 4.1 3.4 - - + -
108C ASN* 3.3 35.9 - - + +
109C THR* 3.3 30.7 - - - +
112C ALA* 3.5 17.0 - - + -
181C GLN* 3.2 9.1 + - + +
182C LEU* 3.1 7.4 + - - +
184C GLN* 1.3 80.0 - - + +
186C THR* 1.3 61.3 + - + +
----------------------------------------------------------
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Residues in contact with THR 186 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG* 3.7 2.2 - - - -
6C VAL* 3.3 36.1 - - + +
9C GLN 3.5 8.3 - - - +
10C ALA* 3.4 15.5 - - + -
13C SER* 3.3 18.1 + - - -
109C THR* 4.4 7.4 - - + -
182C LEU* 2.9 31.0 + - + +
185C ILE* 1.3 75.7 - - + +
187C GLY* 1.3 61.3 + - - +
188C ASN* 3.1 17.0 + - - -
190C TYR* 3.4 24.3 - - - -
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Residues in contact with GLY 187 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG* 3.4 25.7 - - - +
183C ARG* 2.5 43.1 + - - -
186C THR* 1.3 72.3 - - - +
188C ASN* 1.3 61.9 + - - +
189C TYR* 5.5 0.2 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il