Contacts of the helix formed by residues 296 - 363 (chain A) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 296 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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293A TYR* 3.6 11.9 - - - -
294A GLN 3.1 2.2 + - - -
295A GLY* 1.3 74.0 - - - +
297A MET* 1.3 64.4 + - - +
298A VAL 3.4 2.0 - - - -
299A ASN* 3.1 20.8 + - - +
300A SER* 3.1 14.0 + - - -
1429A CL 3.4 12.1 - - - +
32C ASN* 5.9 1.8 - - - -
36C SER* 4.5 0.9 - - - -
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Residues in contact with MET 297 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A GLN* 3.1 32.7 + - + +
295A GLY 3.1 4.6 + - - -
296A GLY* 1.3 74.9 - - - +
298A VAL* 1.3 65.6 + - - +
299A ASN 3.1 0.3 + - - -
300A SER* 3.2 7.8 + - - -
301A GLN* 3.0 52.6 + - - +
33C GLU* 4.3 12.6 - - + +
36C SER* 2.8 33.8 - - - +
37C PRO* 4.5 15.5 - - + -
41C GLN* 5.6 3.6 - - - +
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Residues in contact with VAL 298 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240A ALA 3.5 20.2 - - - +
243A GLY* 3.7 20.0 - - - +
244A HIS* 3.2 37.5 - - + +
291A PRO* 5.8 0.2 - - + -
294A GLN* 3.4 30.5 - - + +
296A GLY 3.3 1.4 + - - -
297A MET* 1.3 77.3 - - + +
299A ASN* 1.3 57.3 + - - +
301A GLN* 3.6 13.0 - - - +
302A VAL* 3.0 25.1 + - - +
1429A CL 3.6 14.1 - - + +
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Residues in contact with ASN 299 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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244A HIS* 3.6 26.5 + - - -
296A GLY* 3.1 15.2 + - - +
298A VAL* 1.3 74.3 - - - +
300A SER* 1.3 57.4 + - - +
301A GLN 2.8 4.7 - - - -
302A VAL* 2.8 7.9 + - - +
303A LYS* 2.7 53.7 + - - +
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Residues in contact with SER 300 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A GLY 3.1 8.8 + - - -
297A MET 3.6 7.9 - - - -
299A ASN* 1.3 78.1 - - - +
301A GLN* 1.3 57.2 + - - +
303A LYS* 5.5 0.2 - - - +
304A GLN* 2.9 35.3 + - - +
29C GLU* 2.8 38.2 + - - +
32C ASN* 3.0 8.2 - - - +
33C GLU* 2.7 39.8 + - - +
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Residues in contact with GLN 301 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240A ALA* 3.9 22.1 + - + +
243A GLY* 5.6 2.2 - - - -
297A MET* 3.0 39.9 + - - +
298A VAL* 3.6 22.1 + - - +
299A ASN 2.8 0.6 - - - -
300A SER* 1.3 76.4 - - - +
302A VAL* 1.3 60.6 + - - +
304A GLN* 3.2 8.5 + - - +
305A ALA* 2.8 30.1 + - - +
33C GLU* 3.4 30.1 - - - +
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Residues in contact with VAL 302 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237A ILE* 4.4 4.9 - - + -
240A ALA* 3.6 8.7 - - + -
241A GLN* 3.5 58.3 - - + +
244A HIS* 4.7 6.3 - - + -
298A VAL* 3.0 18.8 + - + +
299A ASN* 2.8 14.3 + - - +
301A GLN* 1.3 73.6 - - - +
303A LYS* 1.3 63.2 + - + +
305A ALA* 3.5 2.5 + - - +
306A GLN* 3.0 43.3 + - - +
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Residues in contact with LYS 303 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299A ASN* 2.7 34.4 + - + +
300A SER 5.2 0.4 - - - +
302A VAL* 1.3 70.5 - - + +
304A GLN* 1.3 68.1 + - - +
306A GLN* 2.8 28.0 + - - +
307A TYR* 2.9 24.6 + - + +
29C GLU* 3.0 41.7 + - + +
32C ASN* 5.6 1.7 + - - -
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Residues in contact with GLN 304 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300A SER* 2.9 29.2 + - - +
301A GLN* 3.5 5.8 - - - +
303A LYS* 1.3 79.2 - - - +
305A ALA* 1.3 57.9 + - - +
307A TYR* 2.9 12.1 + - - +
308A ASN* 2.8 31.8 + - - +
26C ALA* 3.9 20.6 - - + +
29C GLU* 3.7 11.9 - - + +
30C LYS* 2.9 51.6 + - - +
33C GLU* 2.6 24.3 + - - +
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Residues in contact with ALA 305 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233A ALA 4.0 3.8 - - - +
236A GLN* 3.8 12.8 - - + +
237A ILE* 3.2 38.9 - - - +
240A ALA* 3.9 7.2 - - + -
301A GLN 2.8 20.2 + - - +
302A VAL 3.5 6.1 - - - +
304A GLN* 1.3 71.5 - - - +
306A GLN* 1.3 58.0 - - - +
308A ASN* 3.8 9.0 + - - +
309A PHE* 3.1 17.5 + - - +
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Residues in contact with GLN 306 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237A ILE* 3.7 30.6 - - + +
241A GLN* 5.6 2.4 - - - +
302A VAL* 3.0 34.2 - - - +
303A LYS* 2.8 22.0 + - - +
305A ALA* 1.3 76.6 - - - +
307A TYR* 1.3 60.5 + - + +
308A ASN 3.1 1.3 - - - -
309A PHE* 2.9 18.0 + - + +
310A VAL* 2.9 18.4 + - - +
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Residues in contact with TYR 307 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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303A LYS* 2.9 25.5 + - + +
304A GLN 2.9 5.1 + - - +
306A GLN* 1.3 76.1 - - + +
308A ASN* 1.3 57.0 + - - +
310A VAL* 3.1 15.3 + - + +
311A GLY 3.0 22.3 + - - -
22C ALA* 3.4 25.2 - - - +
25C ASP* 3.5 44.4 - - + +
26C ALA* 3.5 22.7 - - + +
29C GLU* 3.7 21.0 + - + -
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Residues in contact with ASN 308 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233A ALA* 3.6 12.0 - - - +
236A GLN* 3.6 20.9 + - - +
304A GLN 2.8 15.5 + - - +
305A ALA* 3.8 9.4 - - - +
307A TYR* 1.3 77.9 - - - +
309A PHE* 1.3 59.1 + - - +
311A GLY* 3.3 2.7 + - - +
312A ALA* 2.9 25.3 + - - +
19C LYS* 5.6 5.2 + - - +
22C ALA 5.5 0.9 - - - -
23C ASP* 5.7 3.8 - - - -
26C ALA* 4.9 4.9 - - + +
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Residues in contact with PHE 309 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230A GLN* 3.3 27.6 - - + -
233A ALA* 3.6 11.4 - - + -
234A ARG* 3.5 57.7 - - + -
237A ILE* 3.5 17.3 - - + -
305A ALA 3.1 15.5 + - - +
306A GLN* 2.9 12.0 + - - +
308A ASN* 1.3 76.0 + - - +
310A VAL* 1.3 68.5 + - + +
312A ALA* 3.4 1.4 + - - +
313A SER* 3.0 39.6 + - - -
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Residues in contact with VAL 310 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306A GLN 2.9 18.2 + - - +
307A TYR* 3.1 18.6 + - + +
309A PHE* 1.3 77.7 - - + +
311A GLY* 1.3 63.9 + - - +
313A SER* 2.9 10.8 + - - -
314A GLU* 2.8 43.6 + - + +
18C ARG* 5.2 1.3 - - + +
22C ALA* 3.8 15.3 - - + -
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Residues in contact with GLY 311 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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307A TYR 3.0 13.8 + - - -
308A ASN* 3.3 5.1 + - - -
309A PHE 3.2 0.2 - - - -
310A VAL* 1.3 77.0 - - - +
312A ALA* 1.3 60.9 + - - +
313A SER 3.1 0.2 + - - -
314A GLU* 3.1 5.6 + - - +
315A GLN* 3.0 31.5 + - - +
19C LYS* 3.9 22.2 - - - +
22C ALA* 3.7 12.8 - - - +
23C ASP* 5.2 0.2 - - - -
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Residues in contact with ALA 312 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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226A ALA 4.5 2.6 - - - +
229A SER* 4.0 6.0 - - - +
230A GLN* 3.8 21.5 + - - +
233A ALA* 3.4 32.8 - - + -
308A ASN* 2.9 9.3 + - - +
309A PHE 3.6 4.0 - - - +
310A VAL 3.3 0.2 - - - -
311A GLY* 1.3 74.8 - - - +
313A SER* 1.3 61.0 + - - +
315A GLN* 3.6 18.0 + - - +
316A LEU* 3.2 19.8 + - - +
19C LYS* 5.0 0.4 - - - +
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Residues in contact with SER 313 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230A GLN* 2.8 30.0 + - - +
309A PHE* 3.0 26.3 + - - -
310A VAL* 2.9 13.8 + - - -
312A ALA* 1.3 74.5 - - - +
314A GLU* 1.3 62.0 + - - +
316A LEU* 2.8 22.4 + - - +
317A GLU* 3.0 10.4 + - - +
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Residues in contact with GLU 314 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310A VAL* 2.8 31.8 + - + +
311A GLY 3.6 6.5 - - - +
313A SER* 1.3 72.6 - - - +
315A GLN* 1.3 58.1 + - - +
317A GLU* 3.0 13.5 + - - +
318A SER* 2.9 28.5 + - - -
15C PRO* 3.2 26.1 - - - +
18C ARG* 2.7 66.3 + - + +
19C LYS* 3.6 12.1 - - + +
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Residues in contact with GLN 315 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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226A ALA* 4.2 4.2 - - + +
229A SER* 5.9 3.3 - - - -
311A GLY 3.0 13.3 + - - +
312A ALA* 3.7 18.3 - - - +
313A SER 3.1 0.2 - - - -
314A GLU* 1.3 73.6 - - - +
316A LEU* 1.3 61.5 + - - +
318A SER* 3.2 10.8 + - - -
319A ALA* 2.8 28.1 + - - +
19C LYS* 3.5 40.0 + - + +
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Residues in contact with LEU 316 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223A LEU* 3.9 12.1 - - + -
226A ALA* 3.3 39.5 - - + +
227A ARG* 3.7 28.3 - - + +
230A GLN* 3.6 31.0 - - - +
312A ALA 3.2 12.0 + - - +
313A SER 2.8 11.2 + - - +
315A GLN* 1.3 72.8 - - - +
317A GLU* 1.3 67.2 + - - +
319A ALA* 3.2 3.1 + - - +
320A HIS* 2.9 22.8 + - + +
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Residues in contact with GLU 317 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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313A SER 3.0 7.3 + - - +
314A GLU* 3.0 19.2 + - - +
316A LEU* 1.3 77.7 - - - +
318A SER* 1.3 56.5 + - - +
320A HIS* 3.1 13.2 + - - +
321A ARG* 2.8 59.4 + - - +
13C SER 4.8 1.8 - - - +
15C PRO* 3.5 21.5 - - + -
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Residues in contact with SER 318 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A GLU 2.9 7.8 + - - -
315A GLN* 3.4 12.8 - - - -
316A LEU 3.2 0.2 - - - -
317A GLU* 1.3 76.3 - - - +
319A ALA* 1.3 63.4 + - - +
321A ARG* 3.2 4.5 + - - +
322A SER* 2.8 25.9 + - - -
15C PRO* 3.0 24.8 + - - +
16C GLU* 2.6 29.2 + - - +
19C LYS* 5.9 0.2 - - - +
184C GLN* 4.9 0.9 + - - -
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Residues in contact with ALA 319 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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220A ASN* 4.8 2.4 + - - -
222A SER* 4.4 6.6 - - - +
223A LEU* 3.7 16.3 - - + +
226A ALA* 3.4 28.3 - - + -
315A GLN 2.8 9.3 + - - +
316A LEU 3.3 9.6 - - - +
318A SER* 1.3 74.6 - - - +
320A HIS* 1.3 51.7 + - - +
322A SER* 3.3 7.7 + - - -
323A VAL* 2.8 34.3 + - - +
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Residues in contact with HIS 320 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217A GLU* 3.0 35.7 + - + +
223A LEU* 3.5 27.6 - - + +
227A ARG* 5.3 2.5 - - - -
316A LEU* 2.9 13.1 + - + +
317A GLU* 3.5 17.4 + - - +
319A ALA* 1.3 73.7 - - - +
321A ARG* 1.3 69.5 + - - +
322A SER 3.0 2.0 - - - -
323A VAL* 2.9 26.0 - - + +
324A VAL* 2.9 24.1 + - + +
183C ARG* 5.0 6.2 + - - -
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Residues in contact with ARG 321 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317A GLU* 2.8 45.4 + - - +
318A SER* 3.7 6.1 - - - +
320A HIS* 1.3 75.0 - - - +
322A SER* 1.3 56.5 + - - +
324A VAL* 3.5 3.4 - - - +
325A GLN* 3.1 28.4 + - - +
13C SER* 2.9 39.8 + - - -
14C ASN* 4.0 1.4 - - - +
15C PRO* 3.4 25.6 - - + +
183C ARG* 3.9 24.1 + - - +
184C GLN* 3.1 41.2 + - + +
185C ILE 3.3 17.2 + - - -
186C THR 3.7 0.8 - - - -
187C GLY* 3.4 22.7 - - - +
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Residues in contact with SER 322 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A SER 2.8 17.6 + - - -
319A ALA* 3.3 7.9 - - - -
321A ARG* 1.3 75.0 - - - +
323A VAL* 1.3 65.1 + - - +
324A VAL 3.0 1.5 + - - -
325A GLN* 3.3 1.8 + - - +
326A THR* 2.8 36.1 + - - -
184C GLN* 3.4 20.1 + - - +
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Residues in contact with VAL 323 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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213A LEU* 5.7 2.0 - - + -
216A ALA* 3.9 21.8 - - + +
217A GLU* 4.8 4.3 - - + +
220A ASN* 3.1 47.1 - - + +
223A LEU* 4.1 14.1 - - + -
319A ALA 2.8 12.5 + - - +
320A HIS* 2.9 40.2 - - + +
322A SER* 1.3 72.6 + - - +
324A VAL* 1.3 64.5 + - + +
326A THR* 3.8 6.0 - - - -
327A VAL* 3.1 30.3 + - + +
403A ALA* 4.1 3.4 - - - +
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Residues in contact with VAL 324 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213A LEU* 3.8 30.3 - - + -
320A HIS* 2.9 39.9 + - + +
321A ARG 3.5 4.9 - - - +
323A VAL* 1.3 75.1 - - + +
325A GLN* 1.3 70.6 + - - +
327A VAL* 3.0 4.2 + - - +
328A ARG* 3.0 48.3 + - + +
183C ARG* 3.7 29.6 - - + +
189C TYR* 4.0 3.1 - - + +
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Residues in contact with GLN 325 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321A ARG 3.1 13.9 + - - +
322A SER* 3.8 3.2 + - - +
324A VAL* 1.3 82.8 - - + +
326A THR* 1.3 68.9 + - - +
328A ARG* 4.2 4.6 - - - +
329A SER* 2.5 55.0 + - - -
180C GLU* 3.7 29.6 - - + +
181C GLN* 3.6 21.7 - - - +
183C ARG* 5.5 1.6 - - + +
184C GLN* 3.6 30.2 + - + +
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Residues in contact with THR 326 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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322A SER* 2.8 31.9 + - - -
323A VAL* 3.8 7.1 - - - -
325A GLN* 1.3 80.8 + - - +
327A VAL* 1.3 61.2 + - - +
329A SER* 3.8 3.4 - - - -
330A SER* 3.0 39.2 + - - +
399A ASN* 5.4 1.6 - - + +
403A ALA* 3.9 21.3 - - + -
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Residues in contact with VAL 327 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209A VAL* 4.2 7.6 - - + +
212A LEU* 3.8 18.0 - - + +
213A LEU* 3.6 36.8 - - + +
216A ALA* 3.5 30.3 - - + -
323A VAL 3.1 20.5 + - - +
324A VAL 3.0 3.9 + - - +
326A THR* 1.3 72.2 - - - +
328A ARG* 1.3 69.3 + - - +
330A SER* 3.1 5.9 + - - -
331A PHE* 2.9 21.1 + - - +
400A ILE* 5.2 2.3 - - + +
403A ALA* 3.8 19.3 - - + +
404A LEU* 5.0 1.3 - - + -
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Residues in contact with ARG 328 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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209A VAL* 3.6 40.3 - - + +
210A ASN* 5.7 0.6 + - - -
213A LEU* 3.5 25.5 - - + +
324A VAL* 3.0 27.6 + - + +
325A GLN 4.2 0.7 - - - +
327A VAL* 1.3 74.5 - - - +
329A SER* 1.3 58.4 + - - +
331A PHE* 3.1 1.7 + - - +
332A ASN* 2.8 38.1 + - - +
180C GLU* 2.8 35.5 + - - +
189C TYR* 2.9 33.0 + - - -
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Residues in contact with SER 329 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A GLN* 2.5 44.6 + - - -
326A THR* 3.8 3.8 - - - -
328A ARG* 1.3 75.1 - - - +
330A SER* 1.3 55.3 + - - +
332A ASN* 3.1 2.1 + - - +
333A ASN* 2.7 48.3 + - - -
177C ASN* 3.7 22.4 + - - +
180C GLU* 4.2 6.1 - - - +
181C GLN* 4.9 0.2 + - - -
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Residues in contact with SER 330 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326A THR* 3.0 25.6 + - - +
327A VAL* 3.5 5.6 - - - -
329A SER* 1.3 76.4 - - - +
331A PHE* 1.3 57.1 + - - +
333A ASN* 4.1 7.5 - - - +
334A ILE* 3.0 23.6 + - - +
396A ASN* 4.6 4.8 - - - +
399A ASN* 3.7 24.0 + - - +
400A ILE* 3.2 40.8 - - - +
403A ALA* 4.8 0.2 - - - +
----------------------------------------------------------
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Residues in contact with PHE 331 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206A PRO* 3.8 18.4 - - + -
207A GLN 3.5 25.8 - - - -
208A PRO* 4.5 2.9 - - + -
209A VAL* 3.4 44.2 - - + -
212A LEU* 4.3 8.3 - - + -
327A VAL 2.9 12.8 + - - +
328A ARG 3.3 7.6 - - - +
330A SER* 1.3 73.2 - - - +
332A ASN* 1.3 81.0 + - - +
334A ILE* 3.1 22.7 - - - +
335A ASN* 3.1 30.5 + - - -
400A ILE* 4.1 4.4 - - - +
----------------------------------------------------------
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Residues in contact with ASN 332 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A ARG* 2.8 21.1 + - - +
329A SER 3.5 2.2 - - - +
331A PHE* 1.3 92.8 - - - +
333A ASN* 1.3 57.6 + - - +
335A ASN* 3.3 6.7 + - - +
336A ALA* 2.9 24.6 + - - +
173C ASN* 3.3 17.5 - - - +
176C ASP* 3.6 25.6 + - + +
177C ASN* 3.2 28.0 + - - +
180C GLU* 4.2 13.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 333 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329A SER* 2.7 36.4 + - - +
330A SER* 4.1 4.0 - - - +
332A ASN* 1.3 70.6 - - - +
334A ILE* 1.3 60.6 + - - +
336A ALA* 3.4 2.8 + - - +
337A SER* 2.8 30.3 + - - -
396A ASN* 3.3 26.3 + - - +
173C ASN* 3.2 13.0 + - - +
177C ASN* 3.0 25.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 334 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A ASP 4.7 3.4 - - - +
206A PRO* 3.3 35.9 - - + -
330A SER 3.0 17.0 + - - +
331A PHE 3.1 14.1 - - - +
333A ASN* 1.3 75.5 - - - +
335A ASN* 1.3 66.3 + - - +
337A SER* 3.1 7.5 - - - -
338A ILE* 3.0 28.5 + - + +
393A TYR* 3.8 23.1 - - + +
396A ASN* 4.0 14.0 - - + -
397A GLN* 3.6 35.0 - - + +
400A ILE* 3.7 18.6 - - + -
----------------------------------------------------------
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Residues in contact with ASN 335 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205A LYS* 5.4 2.3 - - - +
206A PRO* 3.6 23.5 - - - +
331A PHE* 3.1 43.8 + - - -
332A ASN* 3.5 9.3 - - - +
334A ILE* 1.3 77.4 - - - +
336A ALA* 1.3 58.4 + - - +
337A SER 2.9 4.0 - - - -
338A ILE* 2.9 11.8 + - - +
339A SER* 2.8 30.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 336 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A ASN 2.9 4.9 + - - +
333A ASN* 3.9 3.8 - - - +
335A ASN* 1.3 79.5 - - - +
337A SER* 1.3 56.0 - - - +
339A SER* 3.8 8.7 - - - -
340A SER* 2.9 30.7 + - - -
169C LEU* 3.6 12.9 - - + +
170C THR* 6.2 0.2 - - + -
173C ASN* 3.3 43.5 - - + +
----------------------------------------------------------
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Residues in contact with SER 337 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333A ASN 2.8 18.3 + - - -
334A ILE* 3.1 11.9 - - - -
335A ASN 2.9 0.2 - - - -
336A ALA* 1.3 76.2 - - - +
338A ILE* 1.3 59.6 + - - +
340A SER* 3.4 4.3 + - - -
341A ILE* 3.0 35.3 + - - +
389A ALA* 3.5 7.3 + - - +
392A ASN* 3.7 5.0 - - - +
393A TYR* 3.0 36.7 + - - +
396A ASN* 3.8 7.7 + - - -
----------------------------------------------------------
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Residues in contact with ILE 338 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A THR* 3.3 33.0 - - + +
204A ASP 4.1 18.4 - - - +
205A LYS* 4.1 9.4 - - - +
206A PRO* 4.2 9.6 - - + -
334A ILE* 3.0 13.9 + - + +
335A ASN* 2.9 9.7 + - - +
337A SER* 1.3 72.8 - - - +
339A SER* 1.3 68.2 + - - +
341A ILE* 3.2 11.1 + - - +
342A ASN* 3.3 24.8 + - - +
393A TYR* 3.5 29.2 - - + -
----------------------------------------------------------
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Residues in contact with SER 339 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335A ASN 2.8 15.8 + - - -
336A ALA* 3.8 6.7 - - - -
338A ILE* 1.3 78.4 - - - +
340A SER* 1.3 59.0 + - - +
342A ASN* 3.5 11.3 - - - +
343A ALA* 3.3 15.4 + - - +
169C LEU* 3.0 30.0 - - - +
----------------------------------------------------------
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Residues in contact with SER 340 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
336A ALA 2.9 19.0 + - - -
337A SER* 3.8 5.8 - - - -
339A SER* 1.3 74.5 - - - +
341A ILE* 1.3 67.4 + - - +
342A ASN 3.0 2.9 + - - -
343A ALA* 3.3 2.0 + - - +
344A TYR* 3.1 53.5 + - - -
389A ALA* 4.6 7.2 - - - +
166C ALA* 4.5 1.4 + - - +
169C LEU* 3.1 21.5 - - - +
170C THR* 4.4 6.5 - - - +
----------------------------------------------------------
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Residues in contact with ILE 341 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A PHE* 3.9 5.6 - - + -
203A THR* 3.8 27.4 - - + -
337A SER 3.0 26.4 + - - +
338A ILE* 3.2 6.5 + - - +
340A SER* 1.3 75.0 - - - +
342A ASN* 1.3 59.5 + - - +
345A LYS* 3.0 40.1 + - - +
386A LEU* 3.3 17.0 - - + +
389A ALA* 3.7 22.9 - - + -
390A ARG* 3.6 38.1 - - + +
393A TYR* 3.9 11.7 - - + -
----------------------------------------------------------
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Residues in contact with ASN 342 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A THR* 5.8 2.0 + - - +
338A ILE* 3.3 24.4 + - - +
339A SER* 3.5 10.1 - - - +
340A SER 3.0 0.6 - - - -
341A ILE* 1.3 79.3 - - - +
343A ALA* 1.3 66.2 + - - +
345A LYS* 2.9 28.9 + - - +
346A GLN* 2.9 24.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 343 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A SER 3.3 10.5 + - - +
340A SER* 3.3 6.4 + - - +
342A ASN* 1.3 78.7 - - - +
344A TYR* 1.3 58.0 + - - +
346A GLN* 3.2 9.0 - - - +
347A ALA* 2.8 29.0 + - - +
162C ASP 4.8 5.0 - - - +
165C LEU* 4.7 4.9 - - + -
166C ALA* 3.7 34.8 - - + +
169C LEU* 4.4 5.8 - - + -
----------------------------------------------------------
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Residues in contact with TYR 344 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340A SER* 3.1 43.8 + - - +
343A ALA* 1.3 72.3 - - - +
345A LYS* 1.3 67.1 + - - +
346A GLN 3.0 1.6 - - - -
347A ALA* 4.2 6.7 - - + +
348A VAL* 2.9 31.7 + - - +
382A ALA* 4.2 15.5 - - + +
385A GLU* 3.4 55.5 + - + +
386A LEU* 3.8 21.5 - - + -
389A ALA* 4.7 3.8 - - + -
163C THR* 5.7 4.5 - - - -
166C ALA* 3.6 28.6 + - + +
167C ASN* 4.2 9.9 + - - -
170C THR* 5.6 3.0 - - + +
----------------------------------------------------------
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Residues in contact with LYS 345 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341A ILE* 3.0 31.5 + - - +
342A ASN* 2.9 26.0 + - - +
344A TYR* 1.3 77.5 - - - +
346A GLN* 1.3 64.3 + - - +
348A VAL* 3.6 7.7 + - - +
349A VAL* 3.6 14.7 - - - +
386A LEU* 3.8 20.8 - - + +
390A ARG* 5.8 3.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 346 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342A ASN 2.9 12.0 + - - +
343A ALA* 3.2 13.2 - - - +
345A LYS* 1.3 74.8 - - - +
347A ALA* 1.3 54.0 + - - +
348A VAL 3.0 3.8 - - - -
349A VAL* 2.6 46.0 + - - +
350A SER* 3.2 11.4 + - - -
158C ARG* 4.6 6.9 + - - -
162C ASP* 2.7 34.6 - - + +
----------------------------------------------------------
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Residues in contact with ALA 347 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A ALA 2.8 19.5 + - - +
344A TYR* 4.0 12.6 - - + +
346A GLN* 1.3 74.3 - - - +
348A VAL* 1.3 56.5 + - - +
349A VAL 3.1 0.2 - - - -
350A SER* 3.3 12.3 + - - +
351A ALA* 3.0 32.7 + - - +
382A ALA* 4.0 12.5 - - + +
159C ALA 5.3 0.9 - - - +
162C ASP* 4.2 15.9 - - + +
163C THR* 4.7 16.4 - - - +
166C ALA* 5.9 0.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL 348 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A TYR 2.9 27.9 + - - +
345A LYS* 3.7 7.4 - - - +
346A GLN 2.8 2.8 + - - -
347A ALA* 1.3 75.4 - - - +
349A VAL* 1.3 60.0 + - + +
351A ALA* 4.6 1.6 - - - -
352A GLN* 3.1 26.0 + - + +
379A LEU* 3.5 7.0 - - + +
382A ALA* 3.3 36.8 - - - +
383A LYS* 3.8 29.4 - - + +
386A LEU* 4.3 13.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 349 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345A LYS* 3.6 15.5 - - + +
346A GLN* 2.6 24.6 + - - +
348A VAL* 1.3 72.4 - - + +
350A SER* 1.3 61.7 + - - +
351A ALA 3.0 1.3 - - - -
352A GLN* 2.8 22.3 + - + +
353A SER* 2.9 22.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 350 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346A GLN* 3.2 6.2 + - - -
347A ALA* 3.3 14.6 + - - -
349A VAL* 1.3 80.9 - - - +
351A ALA* 1.3 59.1 + - - +
353A SER* 4.1 6.1 - - - +
354A SER* 3.3 25.3 + - - -
155C GLN* 4.4 2.8 - - - +
158C ARG* 4.8 5.6 - - - -
159C ALA* 3.6 28.7 + - - +
162C ASP* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 351 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
347A ALA 3.0 19.8 + - - +
348A VAL* 4.6 0.7 - - - -
349A VAL 3.0 1.0 - - - -
350A SER* 1.3 76.1 + - - +
352A GLN* 1.3 64.0 + - - +
353A SER 3.4 0.2 - - - -
354A SER* 4.0 5.4 - - - -
355A LEU* 3.1 23.7 + - - +
375A ALA* 4.4 2.9 - - - +
378A THR* 3.9 28.9 - - + +
379A LEU* 3.7 24.0 - - + +
382A ALA* 4.9 1.3 - - + -
159C ALA* 4.7 4.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN 352 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348A VAL* 3.1 21.7 + - + +
349A VAL* 2.8 9.3 + - - +
351A ALA* 1.3 75.2 - - - +
353A SER* 1.3 66.3 + - - +
355A LEU* 3.4 8.0 + - - +
356A ASP* 3.0 44.0 + - - +
379A LEU* 3.5 30.0 - - - +
383A LYS* 4.5 7.3 - - - -
----------------------------------------------------------
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Residues in contact with SER 353 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349A VAL* 2.9 22.8 + - - +
350A SER* 4.2 5.6 - - - -
352A GLN* 1.3 75.3 - - - +
354A SER* 1.3 65.6 + - - +
356A ASP* 2.8 21.2 + - - +
357A ALA* 2.9 13.2 + - - +
155C GLN* 3.6 23.6 + - - -
----------------------------------------------------------
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Residues in contact with SER 354 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350A SER 3.3 18.2 + - - -
351A ALA* 4.1 6.3 - - - -
353A SER* 1.3 78.3 - - - +
355A LEU* 1.3 62.2 + - - +
357A ALA* 3.4 8.7 + - - +
358A MET* 3.1 32.7 + - - +
375A ALA* 4.4 7.0 - - - +
152C THR* 5.2 1.2 + - - -
155C GLN* 4.0 28.9 + - - +
156C ASN* 4.2 12.5 + - - +
159C ALA* 4.6 4.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 355 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A ARG* 6.1 3.1 - - - +
351A ALA 3.1 19.5 + - - +
352A GLN* 3.7 11.2 - - - +
353A SER 3.1 0.8 - - - -
354A SER* 1.3 73.4 - - - +
356A ASP* 1.3 62.1 + - - +
358A MET 3.5 0.5 + - - -
359A GLU* 2.9 55.9 + - + +
372A VAL* 3.7 6.1 - - + +
375A ALA* 3.5 17.0 - - + +
376A THR* 3.2 46.0 - - + +
379A LEU* 4.1 22.7 - - + -
380A TYR* 5.6 3.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 356 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352A GLN* 3.0 38.7 + - - +
353A SER* 2.8 13.3 + - - +
355A LEU* 1.3 77.8 - - - +
357A ALA* 1.3 63.2 + - - +
359A GLU* 3.7 16.7 - - - +
360A ALA* 3.0 22.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 357 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353A SER 2.9 7.6 + - - +
354A SER* 3.5 9.4 - - - +
355A LEU 3.1 0.2 - - - -
356A ASP* 1.3 73.3 - - - +
358A MET* 1.3 69.0 + - - +
360A ALA* 2.7 20.2 + - - +
361A GLY* 2.7 12.2 + - - -
367A SER* 4.7 2.0 - - - -
151C ILE* 5.2 2.7 - - + -
152C THR* 3.8 19.7 - - + -
155C GLN* 3.2 27.8 - - - +
----------------------------------------------------------
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Residues in contact with MET 358 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A SER* 3.1 23.9 + - - +
355A LEU 3.7 3.8 - - - +
357A ALA* 1.3 77.7 - - - +
359A GLU* 1.3 57.6 + - - +
362A TYR* 2.8 32.7 + - - +
367A SER* 3.0 36.0 - - - +
371A ASP* 3.2 56.1 - - + +
372A VAL* 3.5 16.9 - - + +
375A ALA* 4.2 5.4 - - + -
152C THR* 4.0 29.4 - - + +
156C ASN* 5.5 7.2 - - - +
----------------------------------------------------------
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Residues in contact with GLU 359 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A ARG* 4.7 17.0 + - - -
136A GLN* 3.1 36.6 + - - +
139A GLN* 5.0 3.8 + - - -
355A LEU* 2.9 37.7 + - + +
356A ASP* 3.7 22.3 - - - +
358A MET* 1.3 75.9 - - - +
360A ALA* 1.3 65.5 + - - +
362A TYR* 3.3 2.8 + - - +
363A SER* 3.2 22.2 + - - -
372A VAL* 4.1 10.3 - - + -
376A THR* 5.5 0.6 + - - -
----------------------------------------------------------
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Residues in contact with ALA 360 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356A ASP 3.0 19.4 + - - +
357A ALA* 2.7 11.2 + - - +
359A GLU* 1.3 72.7 - - - +
361A GLY* 1.3 59.7 + - - +
363A SER* 2.5 28.1 + - - -
364A VAL* 3.7 7.3 + - - +
----------------------------------------------------------
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Residues in contact with GLY 361 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357A ALA 2.7 15.1 + - - -
360A ALA* 1.3 71.1 - - - +
362A TYR* 1.3 66.1 + - - +
364A VAL* 2.8 16.9 + - - +
366A THR* 2.7 38.6 + - - -
367A SER* 3.4 13.0 - - - -
----------------------------------------------------------
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Residues in contact with TYR 362 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A GLN* 4.3 7.4 - - - -
139A GLN* 3.9 21.1 - - - -
140A THR* 3.4 36.4 - - + +
143A ARG* 3.1 33.7 + - + -
149A VAL* 3.4 16.3 - - + +
153A ASP* 2.5 36.8 + - - +
358A MET 2.8 23.1 + - - +
359A GLU* 3.6 5.6 - - - +
361A GLY* 1.3 71.4 - - - +
363A SER* 1.3 61.3 + - - +
364A VAL 3.2 0.7 + - - -
365A GLY* 3.2 3.3 + - - -
367A SER* 2.9 32.1 - - - +
368A THR* 3.8 1.3 - - - -
369A ILE* 3.4 24.0 - - + -
372A VAL* 3.7 10.3 - - + -
----------------------------------------------------------
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Residues in contact with SER 363 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A GLN* 4.6 15.0 - - - +
143A ARG* 3.0 23.6 + - - +
359A GLU 3.2 9.3 + - - -
360A ALA* 2.5 24.5 + - - -
361A GLY 3.0 0.2 - - - -
362A TYR* 1.3 78.1 - - - +
364A VAL* 1.3 66.8 + - - +
365A GLY 3.6 0.2 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il