Contacts of the helix formed by residues 368 - 405 (chain A) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 368 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362A TYR* 3.8 1.8 - - - -
366A THR 4.3 0.6 + - - -
367A SER* 1.3 72.7 - - - +
369A ILE* 1.3 62.0 + - - +
370A VAL* 3.1 24.8 + - + +
371A ASP* 2.9 52.9 + - - +
372A VAL* 3.0 14.2 + - - +
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Residues in contact with ILE 369 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136A GLN* 4.2 10.5 - - - +
140A THR* 3.5 30.5 - - + -
152A THR 5.2 0.4 - - - +
153A ASP* 3.5 42.7 + - - +
156A ASN* 4.5 10.1 - - + +
157A ALA* 4.8 1.8 - - + -
362A TYR* 3.4 17.5 - - + -
368A THR* 1.3 69.3 + - - +
370A VAL* 1.3 73.7 + - + +
372A VAL* 3.0 13.4 + - + +
373A LEU* 2.7 59.8 + - + +
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Residues in contact with VAL 370 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A ASN* 4.0 19.1 - - - +
160A GLN* 5.6 2.9 - - - +
368A THR* 3.5 12.8 - - - +
369A ILE* 1.3 87.0 - - + +
371A ASP* 1.3 66.9 + - - +
373A LEU* 4.7 4.0 - - - -
374A ASP* 3.0 48.0 + - - +
371B ASP* 4.7 20.2 - - - +
374B ASP* 6.1 1.3 - - - +
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Residues in contact with ASP 371 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358A MET* 3.2 45.6 - - + +
368A THR* 2.9 41.9 + - + +
370A VAL* 1.3 81.8 - - - +
372A VAL* 1.3 54.5 + - - +
374A ASP* 4.0 4.1 - - - +
375A ALA* 3.1 22.5 + - - +
156C ASN* 5.1 4.1 + - - -
370C VAL* 4.3 25.3 - - - +
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Residues in contact with VAL 372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136A GLN* 3.3 41.3 - - + +
355A LEU* 3.7 1.1 - - + +
358A MET* 3.5 33.4 - - + +
359A GLU* 4.1 10.8 - - + -
362A TYR* 3.7 20.2 - - + -
367A SER 4.8 0.2 - - - +
368A THR 3.4 14.1 - - - +
369A ILE* 3.0 11.2 + - + +
371A ASP* 1.3 72.9 - - - +
373A LEU* 1.3 60.8 + - - +
374A ASP 3.0 1.6 - - - -
375A ALA* 3.0 4.7 + - - +
376A THR* 2.8 35.1 + - - +
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Residues in contact with LEU 373 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ILE* 4.6 19.5 - - + +
136A GLN* 4.5 19.7 - - + -
156A ASN* 3.3 26.7 - - - +
157A ALA* 3.6 28.3 - - + +
160A GLN* 3.3 29.4 - - + +
369A ILE* 2.7 41.8 + - + +
370A VAL* 4.2 2.9 - - - +
372A VAL* 1.3 74.6 - - - +
374A ASP* 1.3 57.1 + - - +
376A THR* 3.6 8.2 - - - +
377A THR* 3.2 27.9 + - - -
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Residues in contact with ASP 374 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160A GLN* 4.1 13.7 + - - +
370A VAL* 3.0 33.7 + - - +
371A ASP* 4.0 4.3 - - - +
372A VAL 3.0 0.2 - - - -
373A LEU* 1.3 78.5 - - - +
375A ALA* 1.3 62.0 + - - +
376A THR 3.1 1.8 - - - -
377A THR* 3.8 6.8 - - - +
378A THR* 2.9 32.8 + - - -
370C VAL* 5.9 2.8 - - - +
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Residues in contact with ALA 375 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351A ALA 4.4 2.5 - - - +
354A SER* 4.2 9.9 - - - +
355A LEU* 3.5 36.4 - - + +
358A MET* 4.2 5.8 - - + -
371A ASP 3.1 18.0 + - - +
372A VAL 3.0 5.3 + - - +
374A ASP* 1.3 76.1 - - - +
376A THR* 1.3 58.7 + - - +
378A THR* 3.4 7.5 + - - -
379A LEU* 3.1 28.6 + - - +
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Residues in contact with THR 376 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A GLN* 4.3 7.4 - - + +
132A ALA* 4.7 11.0 - - + +
133A ILE* 4.0 26.7 - - + -
136A GLN* 5.0 6.2 - - - +
355A LEU* 3.2 27.3 - - - +
359A GLU* 5.5 0.5 + - - -
372A VAL* 2.8 18.7 + - - +
373A LEU* 3.6 10.8 - - - +
375A ALA* 1.3 76.1 - - - +
377A THR* 1.3 63.6 + - - +
379A LEU* 3.4 1.4 + - - +
380A TYR* 3.2 42.9 + - + -
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Residues in contact with THR 377 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A GLN* 3.7 19.2 + - - +
133A ILE* 5.2 1.9 - - - +
160A GLN* 4.0 9.4 + - - -
373A LEU 3.2 16.6 + - - -
374A ASP* 3.9 7.4 - - - +
375A ALA 3.4 0.2 - - - -
376A THR* 1.3 80.1 - - - +
378A THR* 1.3 63.9 + - - +
379A LEU 3.5 0.3 + - - -
380A TYR* 3.7 0.9 + - - +
381A ASN* 3.3 36.2 + - - +
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Residues in contact with THR 378 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351A ALA* 3.9 18.8 - - + -
374A ASP 2.9 22.7 + - - -
375A ALA* 3.6 9.1 - - - -
377A THR* 1.3 79.9 - - - +
379A LEU* 1.3 60.7 + - - +
381A ASN* 3.5 5.0 + - - +
382A ALA* 3.3 22.5 + - + +
159C ALA* 5.5 8.5 - - + -
163C THR* 5.3 8.3 - - - +
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Residues in contact with LEU 379 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348A VAL* 3.5 20.9 - - + +
351A ALA* 3.7 12.3 - - + +
352A GLN* 3.5 53.2 - - - +
355A LEU* 4.1 20.4 - - + -
375A ALA 3.1 16.1 + - - +
376A THR* 3.8 4.9 - - - +
378A THR* 1.3 72.5 - - - +
380A TYR* 1.3 73.7 + - + +
381A ASN 2.9 10.2 + - - -
382A ALA* 3.3 3.5 + - - +
383A LYS* 2.9 39.6 + - + +
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Residues in contact with TYR 380 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A TYR* 3.8 18.4 - + + +
128A ALA* 3.7 26.6 + - + +
129A GLN* 3.4 50.4 - - + +
132A ALA* 4.2 15.4 - - + +
135A ARG* 4.9 4.7 + - - -
355A LEU* 5.6 3.4 - - + -
376A THR* 3.2 27.0 + - + +
377A THR 3.7 0.6 + - - +
378A THR 3.5 0.4 - - - -
379A LEU* 1.3 93.9 - - + +
381A ASN* 1.3 63.8 + - - +
383A LYS* 3.5 37.2 - - + -
384A GLN* 3.1 27.7 + - - +
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Residues in contact with ASN 381 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A GLN* 4.9 5.7 + - - +
377A THR* 3.3 30.2 + - - +
378A THR* 3.5 6.4 + - - +
379A LEU 3.0 0.4 - - - -
380A TYR* 1.3 84.8 + - - +
382A ALA* 1.3 60.4 - - - +
383A LYS 2.9 0.9 - - - -
384A GLN* 2.7 10.8 + - - +
385A GLU* 2.7 43.3 + - + +
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Residues in contact with ALA 382 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A TYR* 4.2 9.0 - - + +
347A ALA* 4.0 27.8 - - + +
348A VAL* 3.3 26.7 - - + +
351A ALA* 4.9 0.9 - - + -
378A THR* 3.3 13.6 + - + +
379A LEU* 3.3 4.7 + - - +
381A ASN* 1.3 78.4 - - - +
383A LYS* 1.3 57.4 + - - +
385A GLU* 3.8 8.5 - - - +
386A LEU* 3.0 24.1 + - - +
163C THR* 6.0 1.6 - - - +
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Residues in contact with LYS 383 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A TYR* 3.3 36.4 + - + -
348A VAL* 3.9 24.6 - - + +
352A GLN* 4.5 7.0 - - - -
379A LEU* 2.9 34.2 + - + +
380A TYR* 3.5 42.0 - - + -
381A ASN 2.8 1.6 + - - -
382A ALA* 1.3 79.1 - - - +
384A GLN* 1.3 60.8 + - - +
386A LEU* 3.5 4.1 + - - +
387A ALA 3.1 16.5 + - - -
390A ARG* 5.6 0.2 + - - -
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Residues in contact with GLN 384 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122A VAL* 3.5 32.8 - - + +
125A TYR* 3.3 41.4 + - + +
126A THR* 4.0 14.1 + - - -
129A GLN* 4.7 6.9 + - - -
380A TYR 3.1 21.1 + - - +
381A ASN* 2.7 16.5 + - - +
383A LYS* 1.3 72.2 - - - +
385A GLU* 1.3 56.1 + - + +
387A ALA* 3.0 4.1 + - - +
388A ASN* 2.7 38.1 + - - +
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Residues in contact with GLU 385 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A TYR* 3.4 50.0 - - + +
381A ASN* 2.7 27.7 + - + +
382A ALA* 3.8 0.7 - - - +
384A GLN* 1.3 72.0 - - + +
386A LEU* 1.3 57.6 + - - +
388A ASN* 3.4 10.4 + - - +
389A ALA* 2.8 30.3 + - - +
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Residues in contact with LEU 386 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341A ILE* 3.3 38.6 - - + +
344A TYR* 3.8 11.8 - - + +
345A LYS* 3.8 25.4 - - + +
348A VAL* 4.3 13.5 - - + -
382A ALA 3.0 18.3 + - - +
383A LYS* 3.7 4.7 - - - +
385A GLU* 1.3 74.5 - - - +
387A ALA* 1.3 66.2 + - - +
389A ALA* 3.1 4.5 + - - +
390A ARG* 3.1 55.2 + - - +
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Residues in contact with ALA 387 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118A ASN* 4.7 1.6 - - - +
121A ASP* 3.7 24.0 - - + +
125A TYR* 3.6 32.1 - - + +
383A LYS 3.1 2.6 + - - +
384A GLN* 3.0 8.6 + - - +
386A LEU* 1.3 80.8 - - - +
388A ASN* 1.3 62.7 + - - +
390A ARG* 3.3 25.3 + - - +
391A TYR* 3.3 21.1 + - - -
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Residues in contact with ASN 388 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118A ASN* 3.0 37.9 + - - +
122A VAL* 5.4 4.9 - - - +
384A GLN* 2.7 21.2 + - - +
385A GLU* 3.6 12.6 - - - +
387A ALA* 1.3 71.3 - - - +
389A ALA* 1.3 64.7 + - - +
391A TYR* 3.2 5.5 + - - +
392A ASN* 3.1 38.7 + - - +
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Residues in contact with ALA 389 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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337A SER* 3.5 9.4 + - - +
340A SER* 4.6 10.3 - - - +
341A ILE* 3.7 30.6 - - + +
344A TYR* 4.7 5.4 - - + -
385A GLU 2.8 21.0 + - - +
386A LEU* 3.1 8.0 + - - +
388A ASN* 1.3 71.7 - - - +
390A ARG* 1.3 63.4 + - - +
392A ASN* 3.3 7.6 + - - +
393A TYR* 3.0 19.2 + - - +
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Residues in contact with ARG 390 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A TYR* 4.7 9.9 + - - -
196A LEU* 4.0 17.5 - - + +
198A VAL* 3.4 34.2 + - - +
201A PHE* 3.6 43.9 - - + +
341A ILE* 3.6 19.5 - - + +
345A LYS* 5.8 3.4 - - - +
383A LYS 5.6 0.2 + - - -
386A LEU* 3.1 50.0 + - - +
387A ALA* 3.5 20.7 - - - +
388A ASN 3.2 0.2 - - - -
389A ALA* 1.3 77.4 - - - +
391A TYR* 1.3 63.5 + - - +
393A TYR* 3.1 12.5 + - - +
394A LEU* 3.1 17.5 + - - +
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Residues in contact with TYR 391 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A PHE* 4.3 27.3 - + + +
117A LEU* 3.5 34.8 - - + +
118A ASN* 3.1 39.9 - - + +
121A ASP* 3.1 33.3 + - - -
195A ALA* 5.5 1.0 - - - +
196A LEU* 3.9 40.2 + - + +
387A ALA 3.3 15.9 + - - -
388A ASN* 3.2 6.1 + - - +
390A ARG* 1.3 76.6 - - - +
392A ASN* 1.3 68.4 + - - +
394A LEU* 3.1 10.5 + - + +
395A ILE* 3.0 27.9 + - + +
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Residues in contact with ASN 392 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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337A SER* 4.1 3.4 - - - +
388A ASN* 3.1 29.1 + - - +
389A ALA* 3.6 10.0 - - - +
391A TYR* 1.3 80.2 - - - +
393A TYR* 1.3 57.4 + - - +
395A ILE* 3.7 8.6 - - - +
396A ASN* 2.8 46.5 + - - +
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Residues in contact with TYR 393 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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201A PHE* 3.6 21.8 - + - -
202A LYS 4.2 3.6 - - - -
203A THR* 3.2 17.7 - - + -
204A ASP* 2.5 32.8 + - - +
334A ILE* 3.8 23.8 - - + -
337A SER* 3.0 18.7 + - - +
338A ILE* 3.5 35.0 - - + -
341A ILE* 3.9 8.3 - - + -
389A ALA 3.0 10.2 + - - +
390A ARG 3.3 7.4 - - - +
392A ASN* 1.3 77.1 - - - +
394A LEU* 1.3 73.5 + - + +
396A ASN* 3.2 3.5 + - - +
397A GLN* 3.0 55.7 + - - +
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Residues in contact with LEU 394 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A PHE* 3.8 37.2 - - + -
196A LEU* 4.2 31.2 - - + -
201A PHE* 3.9 17.7 - - + -
390A ARG 3.7 9.6 - - - +
391A TYR* 3.1 13.4 + - + +
393A TYR* 1.3 90.7 - - + +
395A ILE* 1.3 63.0 + - - +
397A GLN* 3.2 21.9 + - - +
398A LEU* 3.4 12.0 + - - +
415A LEU* 3.8 24.9 - - + +
418A ALA* 5.4 7.6 - - + -
419A LEU* 5.7 0.2 - - + -
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Residues in contact with ILE 395 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107A LEU* 4.8 5.2 - - + -
111A THR* 4.0 35.0 - - + +
114A PHE* 3.5 34.3 - - + -
391A TYR* 3.0 17.1 + - + +
392A ASN* 3.7 10.8 - - - +
394A LEU* 1.3 71.7 - - - +
396A ASN* 1.3 59.0 + - - +
397A GLN 2.9 1.8 - - - -
398A LEU* 2.7 36.7 + - + +
399A ASN* 2.9 28.0 + - - +
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Residues in contact with ASN 396 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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330A SER* 4.6 3.3 - - - +
333A ASN* 3.3 41.7 + - - +
334A ILE* 4.0 18.4 - - + +
337A SER* 3.8 6.9 + - - -
392A ASN* 2.8 38.5 + - - +
393A TYR 3.6 5.4 - - - +
395A ILE* 1.3 72.7 - - - +
397A GLN* 1.3 61.7 + - - +
399A ASN* 3.4 20.5 + - - +
400A ILE* 3.2 27.4 + - - +
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Residues in contact with GLN 397 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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204A ASP* 4.5 12.3 + - - +
334A ILE* 3.6 22.0 - - + +
393A TYR* 3.0 51.7 + - + +
394A LEU* 3.3 9.7 - - - +
395A ILE 2.8 1.0 + - - -
396A ASN* 1.3 74.0 - - - +
398A LEU* 1.3 70.9 - - + +
400A ILE* 3.0 16.6 + - - +
401A LYS* 3.1 15.1 + - - +
415A LEU* 3.7 22.7 - - - +
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Residues in contact with LEU 398 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A ILE* 5.4 1.6 - - + -
107A LEU* 4.8 18.8 - - + +
110A ALA* 3.5 31.9 - - + -
114A PHE* 5.2 0.2 - - + -
394A LEU 3.8 7.4 - - - +
395A ILE* 2.7 27.7 + - + +
397A GLN* 1.3 79.8 - - + +
399A ASN* 1.3 59.3 + - - +
401A LYS* 3.4 8.7 + - + +
402A SER* 3.0 23.9 + - - -
407A LEU* 4.1 23.9 - - + +
411A ASP* 4.6 9.6 - - + +
412A LEU* 4.9 4.9 - - + -
415A LEU* 3.3 37.5 - - + -
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Residues in contact with ASN 399 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A LEU* 3.9 26.0 - - - +
326A THR* 5.4 1.7 - - + +
330A SER* 3.7 16.4 + - - +
395A ILE* 2.9 20.7 + - - +
396A ASN* 3.5 34.1 + - - +
397A GLN 3.1 0.2 - - - -
398A LEU* 1.3 77.2 - - - +
400A ILE* 1.3 56.8 + - - +
402A SER* 3.2 6.8 + - - -
403A ALA* 2.9 28.6 + - - +
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Residues in contact with ILE 400 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206A PRO* 4.4 6.1 - - + -
212A LEU* 3.4 42.8 - - + -
327A VAL* 5.6 2.0 - - + +
330A SER* 3.2 46.0 - - - +
331A PHE* 4.1 5.2 - - - +
334A ILE* 3.7 28.0 - - + -
396A ASN 3.2 10.1 + - - +
397A GLN* 3.0 7.2 + - - +
399A ASN* 1.3 76.6 - - - +
401A LYS* 1.3 63.3 + - - +
403A ALA* 3.1 8.2 + - + +
404A LEU* 3.0 23.0 + - + +
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Residues in contact with LYS 401 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A GLN 3.1 12.3 + - - +
398A LEU* 3.6 11.0 - - + +
400A ILE* 1.3 75.3 - - - +
402A SER* 1.3 63.0 + - - +
404A LEU* 3.0 15.9 + - + +
405A GLY 3.0 15.9 + - - -
406A THR* 3.2 36.9 + - - +
407A LEU* 3.8 17.7 - - + -
408A ASN* 4.7 3.2 - - - +
411A ASP* 2.8 40.9 + - + +
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Residues in contact with SER 402 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A GLN* 3.6 17.7 + - - +
107A LEU* 4.3 15.8 - - - +
220A ASN* 4.2 6.1 - - - +
398A LEU 3.0 13.7 + - - -
399A ASN* 3.4 9.4 - - - -
401A LYS* 1.3 77.6 - - - +
403A ALA* 1.3 54.5 + - - +
405A GLY* 2.7 24.5 + - - +
407A LEU* 3.8 21.8 - - - +
----------------------------------------------------------
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Residues in contact with ALA 403 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216A ALA* 3.0 18.3 - - - +
220A ASN* 3.5 18.4 - - - +
323A VAL* 4.1 2.4 - - + +
326A THR* 3.9 24.9 - - + +
327A VAL* 3.8 26.0 - - + -
399A ASN 2.9 13.3 + - - +
400A ILE* 3.4 13.9 - - + +
402A SER* 1.3 76.4 - - - +
404A LEU* 1.3 60.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 404 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A GLN* 6.2 0.2 - - + -
212A LEU* 2.8 61.2 - - + +
215A GLU* 3.4 24.5 - - + +
216A ALA* 3.5 15.1 - - + +
219A ARG* 2.8 38.5 - - - +
220A ASN 3.2 2.4 + - - -
327A VAL* 5.0 2.0 - - + -
400A ILE* 3.0 17.2 + - + +
401A LYS* 3.0 18.6 + - + +
403A ALA* 1.3 77.7 - - - +
405A GLY* 1.3 52.8 + - - +
406A THR* 3.6 16.3 - - + +
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Residues in contact with GLY 405 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A GLN* 3.4 19.6 + - - -
219A ARG* 3.6 28.4 + - - +
220A ASN* 4.1 3.8 - - - -
221A LEU* 4.3 8.9 - - - +
401A LYS 3.0 0.4 + - - -
402A SER 2.7 17.6 + - - -
404A LEU* 1.3 79.0 - - - +
406A THR* 1.3 62.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il