Contacts of the helix formed by residues 368 - 405 (chain B) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 368 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362B TYR* 3.8 1.8 - - - -
366B THR 4.3 0.8 + - - +
367B SER* 1.3 75.7 - - - +
369B ILE* 1.3 65.3 + - - +
370B VAL* 3.1 24.4 + - - +
371B ASP* 2.9 46.5 + - - +
372B VAL* 3.0 11.8 + - - +
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Residues in contact with ILE 369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B GLN* 3.8 20.9 - - + +
140B THR* 3.3 30.7 - - + -
153B ASP* 3.5 44.9 + - - +
156B ASN* 4.7 8.7 - - + +
157B ALA* 4.6 1.1 - - + -
362B TYR* 3.4 16.1 - - + -
368B THR* 1.3 73.1 + - - +
370B VAL* 1.3 70.7 + - + +
372B VAL* 2.9 7.7 + - + +
373B LEU* 2.7 59.6 + - + +
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Residues in contact with VAL 370 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156B ASN* 4.3 16.4 - - - +
160B GLN* 5.7 2.7 - - - +
368B THR* 3.1 13.2 + - - +
369B ILE* 1.3 88.4 - - + +
371B ASP* 1.3 67.0 + - - +
373B LEU* 4.6 4.9 - - - +
374B ASP* 2.9 46.9 + - - +
371C ASP* 4.2 26.7 - - - +
374C ASP* 6.1 0.9 - - - +
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Residues in contact with ASP 371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A ASN* 5.6 2.5 + - - -
370A VAL* 4.7 20.6 - - - +
358B MET* 3.2 44.6 - - + +
367B SER* 5.4 0.2 - - - -
368B THR* 2.9 38.7 + - + +
370B VAL* 1.3 83.5 - - - +
372B VAL* 1.3 54.0 + - - +
374B ASP* 3.9 4.2 - - - +
375B ALA* 3.0 23.0 + - - +
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Residues in contact with VAL 372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B GLN* 2.9 44.2 - - + +
355B LEU* 3.7 1.3 - - + +
358B MET* 3.4 32.8 - - + +
359B GLU* 3.9 10.8 - - + +
362B TYR* 3.6 21.1 - - + -
367B SER* 4.7 0.7 - - - +
368B THR 3.4 13.5 - - - +
369B ILE* 2.9 9.8 + - + +
371B ASP* 1.3 74.3 - - - +
373B LEU* 1.3 60.5 + - - +
375B ALA* 3.0 4.2 + - - +
376B THR* 2.8 33.5 + - - +
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Residues in contact with LEU 373 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133B ILE* 4.4 23.2 - - + +
136B GLN* 4.2 26.2 - - + -
156B ASN* 3.6 20.6 - - - +
157B ALA* 3.5 33.4 - - + +
160B GLN* 3.5 26.7 - - + +
369B ILE* 2.7 35.4 + - + +
370B VAL* 4.2 2.9 - - - +
372B VAL* 1.3 73.0 - - - +
374B ASP* 1.3 58.9 + - - +
376B THR* 3.5 8.7 - - - +
377B THR* 3.2 27.5 + - - -
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Residues in contact with ASP 374 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160B GLN* 4.1 12.6 + - - +
370B VAL* 2.9 35.6 + - - +
371B ASP* 4.0 4.5 - - - +
373B LEU* 1.3 76.8 - - - +
375B ALA* 1.3 64.9 + - - +
376B THR 3.1 1.1 - - - -
377B THR* 3.5 6.2 + - - +
378B THR* 3.0 29.3 + - - -
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Residues in contact with ALA 375 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351B ALA 4.3 2.4 - - - +
354B SER* 4.1 7.6 - - - +
355B LEU* 3.7 33.7 - - + +
358B MET* 4.0 11.4 - - + -
371B ASP 3.0 19.5 + - - +
372B VAL 3.5 4.7 - - - +
374B ASP* 1.3 77.4 - - - +
376B THR* 1.3 62.3 + - - +
378B THR* 3.4 6.5 + - - -
379B LEU* 3.1 23.6 + - - +
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Residues in contact with THR 376 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B GLN* 4.3 5.8 - - - +
132B ALA* 4.4 14.5 - - + +
133B ILE* 4.0 26.1 + - + -
136B GLN* 5.0 5.7 - - - +
355B LEU* 3.0 30.5 - - - +
359B GLU* 5.4 0.7 + - - -
372B VAL* 2.8 19.3 + - - +
373B LEU* 3.5 10.7 - - - +
375B ALA* 1.3 77.5 - - - +
377B THR* 1.3 63.3 + - - +
379B LEU* 3.5 1.7 + - - +
380B TYR* 3.3 38.9 + - + -
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Residues in contact with THR 377 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B GLN* 3.4 21.8 + - - +
133B ILE* 5.1 1.6 - - - +
160B GLN* 4.1 9.9 + - - -
373B LEU 3.2 15.4 + - - -
374B ASP* 3.5 6.7 + - - +
376B THR* 1.3 75.5 - - - +
378B THR* 1.3 67.8 + - - +
379B LEU 3.5 0.2 + - - -
380B TYR 3.6 1.3 + - - +
381B ASN* 3.3 37.0 + - - +
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Residues in contact with THR 378 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159A ALA* 5.9 6.7 - - + -
163A THR* 5.9 2.7 - - - +
351B ALA* 3.9 18.4 - - + -
374B ASP 3.0 18.9 + - - -
375B ALA* 3.7 7.6 - - - -
377B THR* 1.3 80.5 - - - +
379B LEU* 1.3 61.6 + - - +
381B ASN* 3.4 5.7 + - - +
382B ALA* 3.3 22.1 + - + +
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Residues in contact with LEU 379 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348B VAL* 3.4 18.8 - - + +
351B ALA* 3.4 13.2 - - + +
352B GLN* 3.1 63.3 - - - +
355B LEU* 4.1 16.2 - - + -
375B ALA 3.1 16.7 + - - +
376B THR 3.8 4.3 - - - +
377B THR 3.3 0.2 - - - -
378B THR* 1.3 72.3 - - - +
380B TYR* 1.3 74.6 + - + +
381B ASN 2.9 4.8 + - - -
382B ALA* 3.3 3.8 + - - +
383B LYS* 2.9 43.5 + - + +
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Residues in contact with TYR 380 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B TYR* 3.6 19.1 - + + +
128B ALA* 3.4 34.9 + - + +
129B GLN* 3.4 45.1 - - + +
132B ALA* 4.3 12.1 - - + +
135B ARG* 5.2 3.9 + - - -
355B LEU* 5.2 4.2 - - + +
376B THR* 3.3 26.7 + - + +
377B THR 3.6 1.5 + - - +
378B THR 3.4 0.2 - - - -
379B LEU* 1.3 92.5 - - + +
381B ASN* 1.3 64.3 + - - +
383B LYS* 3.6 33.9 - - + -
384B GLN* 3.2 28.6 + - - +
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Residues in contact with ASN 381 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B GLN* 5.0 5.3 + - - +
377B THR* 3.3 31.0 + - - +
378B THR* 3.7 6.5 - - - +
379B LEU 3.0 0.8 - - - -
380B TYR* 1.3 84.6 + - - +
382B ALA* 1.3 70.1 + - - +
383B LYS 2.9 0.7 - - - -
384B GLN* 2.7 10.6 + - - +
385B GLU* 2.7 33.3 + - + +
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Residues in contact with ALA 382 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344B TYR* 4.2 8.3 - - + +
347B ALA* 3.9 30.7 - - + +
348B VAL* 3.1 24.7 - - + +
351B ALA* 4.7 2.2 - - + -
378B THR* 3.3 11.2 + - + +
379B LEU 3.7 6.3 - - - +
381B ASN* 1.3 79.0 - - - +
383B LYS* 1.3 62.6 + - - +
385B GLU* 3.7 8.3 - - - +
386B LEU* 3.0 20.3 + - - +
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Residues in contact with LYS 383 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B TYR* 3.0 44.1 + - + +
348B VAL* 3.5 27.2 - - + +
352B GLN* 4.1 9.4 + - - -
379B LEU* 2.9 37.0 + - + +
380B TYR* 3.6 36.3 - - + -
381B ASN 2.9 0.2 - - - -
382B ALA* 1.3 78.5 - - - +
384B GLN* 1.3 60.4 + - - +
386B LEU* 3.8 3.9 - - - +
387B ALA 3.2 13.2 + - - -
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Residues in contact with GLN 384 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118B ASN* 5.0 0.5 - - - +
121B ASP* 6.2 0.2 - - + -
122B VAL* 3.3 34.7 - - + +
125B TYR* 3.2 39.1 + - + +
126B THR* 4.0 13.7 + - - -
129B GLN* 4.9 6.7 + - - -
380B TYR 3.2 20.7 + - - +
381B ASN* 2.7 17.1 + - - +
383B LYS* 1.3 71.2 - - - +
385B GLU* 1.3 55.5 + - + +
387B ALA* 3.1 3.9 + - - +
388B ASN* 2.7 37.6 + - - +
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Residues in contact with GLU 385 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344B TYR* 3.4 49.7 + - + +
381B ASN* 2.7 27.1 + - + +
382B ALA* 3.7 0.7 - - - +
384B GLN* 1.3 73.7 - - + +
386B LEU* 1.3 52.5 + - - +
388B ASN* 3.5 10.0 - - - +
389B ALA* 2.7 35.9 + - - +
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Residues in contact with LEU 386 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B TYR* 6.1 0.2 - - - +
341B ILE* 3.2 38.4 - - + +
344B TYR* 3.6 12.0 - - + +
345B LYS* 3.6 26.2 - - + +
348B VAL* 4.2 13.7 - - + -
382B ALA 3.0 18.7 + - - +
383B LYS 3.8 4.3 - - - +
385B GLU* 1.3 72.8 - - - +
387B ALA* 1.3 67.2 + - - +
389B ALA* 3.2 2.8 + - - +
390B ARG* 3.1 57.6 + - - +
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Residues in contact with ALA 387 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ASN* 4.1 2.7 - - - +
121B ASP* 3.4 28.3 - - + +
125B TYR* 3.8 17.0 - - + +
383B LYS 3.2 12.4 + - - +
384B GLN* 3.1 9.1 + - - +
386B LEU* 1.3 81.1 - - - +
388B ASN* 1.3 62.3 + - - +
390B ARG* 3.3 24.1 + - - +
391B TYR* 3.2 21.6 + - - -
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Residues in contact with ASN 388 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ASN* 3.0 35.9 + - - +
122B VAL* 5.6 3.0 - - - +
384B GLN* 2.7 20.7 + - - +
385B GLU* 3.5 13.7 - - - +
387B ALA* 1.3 71.2 - - - +
389B ALA* 1.3 67.3 + - - +
391B TYR* 3.2 5.5 + - - +
392B ASN* 3.1 38.3 + - - +
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Residues in contact with ALA 389 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337B SER* 3.6 7.3 + - - +
340B SER* 4.4 10.8 - - - -
341B ILE* 3.6 31.8 - - + +
344B TYR* 4.6 4.3 - - + -
385B GLU 2.7 20.8 + - - +
386B LEU* 3.5 7.4 - - - +
388B ASN* 1.3 72.3 - - - +
390B ARG* 1.3 63.6 + - - +
392B ASN* 3.2 10.7 + - - +
393B TYR* 3.0 18.9 + - - +
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Residues in contact with ARG 390 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B TYR* 4.8 9.1 + - - -
196B LEU* 3.6 27.2 - - + +
198B VAL* 3.1 38.5 + - - +
201B PHE* 3.5 36.3 - - + -
341B ILE* 3.4 18.6 - - + +
345B LYS* 5.3 5.5 - - - +
386B LEU* 3.1 53.4 + - - +
387B ALA* 3.5 20.5 + - - +
388B ASN 3.2 0.2 - - - -
389B ALA* 1.3 75.9 - - - +
391B TYR* 1.3 63.1 + - - +
393B TYR* 3.1 13.2 + - - +
394B LEU* 3.1 17.2 + - - +
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Residues in contact with TYR 391 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B PHE* 3.8 45.3 - + + +
117B LEU* 3.3 32.8 - - + +
118B ASN* 3.3 33.9 - - + -
121B ASP* 3.4 29.7 + - - -
195B ALA* 5.4 1.0 - - - +
196B LEU* 3.9 32.1 + - + +
387B ALA* 3.2 19.7 + - - -
388B ASN* 3.2 6.3 + - - +
390B ARG* 1.3 76.2 - - - +
392B ASN* 1.3 68.1 + - - +
394B LEU* 3.1 9.7 + - + +
395B ILE* 3.0 27.3 + - + +
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Residues in contact with ASN 392 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337B SER* 4.0 3.6 - - - +
388B ASN* 3.1 29.8 + - - +
389B ALA* 3.6 9.9 - - - +
391B TYR* 1.3 79.8 - - - +
393B TYR* 1.3 52.0 + - - +
395B ILE* 3.8 9.3 - - - +
396B ASN* 2.7 52.9 + - - +
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Residues in contact with TYR 393 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201B PHE* 3.5 23.3 - + - -
202B LYS 4.3 3.8 - - - -
203B THR* 3.5 15.6 - - + -
204B ASP* 2.8 27.2 + - - +
334B ILE* 3.9 21.5 - - + -
337B SER* 2.9 21.4 + - - +
338B ILE* 3.3 39.9 - - + -
341B ILE* 3.7 17.0 - - + -
389B ALA 3.0 2.2 + - - -
390B ARG 3.1 8.0 + - - +
392B ASN* 1.3 78.3 - - - +
394B LEU* 1.3 74.8 + - + +
396B ASN* 3.1 2.9 + - - +
397B GLN* 3.0 54.0 + - + +
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Residues in contact with LEU 394 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B PHE* 3.7 41.1 - - + -
196B LEU* 4.3 26.7 - - + -
201B PHE* 4.1 10.8 - - + -
390B ARG 3.6 11.7 - - - +
391B TYR* 3.1 12.2 + - + +
393B TYR* 1.3 96.4 - - + +
395B ILE* 1.3 63.0 + - - +
397B GLN* 3.3 18.1 + - - +
398B LEU* 3.4 12.4 + - - +
415B LEU* 3.6 27.2 - - + +
418B ALA* 5.3 8.1 - - + -
419B LEU* 5.6 0.2 - - + -
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Residues in contact with ILE 395 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107B LEU* 4.5 6.5 - - + -
110B ALA 4.5 0.7 - - - -
111B THR* 3.7 39.5 - - + +
114B PHE* 3.8 30.5 - - + -
391B TYR* 3.0 17.3 + - + +
392B ASN* 3.8 10.5 - - - +
394B LEU* 1.3 70.2 - - - +
396B ASN* 1.3 67.8 + - - +
397B GLN 3.0 2.2 - - - -
398B LEU* 2.8 25.8 + - + +
399B ASN* 2.8 28.5 + - - +
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Residues in contact with ASN 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330B SER* 4.6 3.4 - - - +
333B ASN* 3.5 30.5 + - - +
334B ILE* 3.9 20.9 - - + +
337B SER* 3.7 15.0 + - - -
392B ASN* 2.7 40.7 + - - +
393B TYR 3.6 4.5 - - - +
395B ILE* 1.3 73.4 - - - +
397B GLN* 1.3 61.3 + - - +
399B ASN* 3.3 19.6 + - - +
400B ILE* 3.1 28.1 + - - +
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Residues in contact with GLN 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204B ASP* 4.8 8.9 + - - +
334B ILE* 3.5 22.2 - - + +
393B TYR* 3.0 49.0 + - + +
394B LEU* 3.3 8.6 - - - +
395B ILE 3.0 0.4 - - - -
396B ASN* 1.3 72.5 - - - +
398B LEU* 1.3 73.1 + - + +
400B ILE* 3.0 7.8 + - - +
401B LYS* 3.0 24.2 + - + +
415B LEU* 3.6 23.9 - - - +
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Residues in contact with LEU 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B ILE* 5.0 1.1 - - + -
107B LEU* 4.5 19.5 - - + +
110B ALA* 3.4 34.1 - - + -
114B PHE* 5.6 0.2 - - + -
394B LEU 3.4 6.9 + - - +
395B ILE* 2.8 17.9 + - + +
397B GLN* 1.3 84.8 - - + +
399B ASN* 1.3 56.7 + - - +
401B LYS* 3.3 8.7 + - + +
402B SER* 2.8 30.0 + - - -
407B LEU* 4.0 24.8 - - + +
411B ASP* 4.5 12.8 - - + +
412B LEU* 4.8 4.5 - - + -
415B LEU* 3.5 32.1 - - + -
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Residues in contact with ASN 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107B LEU* 3.8 25.7 - - - +
326B THR* 5.2 0.5 - - - +
330B SER* 3.9 16.1 + - - +
395B ILE* 2.8 20.8 + - - +
396B ASN* 3.5 34.4 + - - +
397B GLN 3.1 0.4 - - - -
398B LEU* 1.3 73.9 - - - +
400B ILE* 1.3 60.7 + - - +
402B SER* 3.2 6.6 + - - -
403B ALA* 2.7 30.3 + - - +
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Residues in contact with ILE 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206B PRO* 4.5 5.2 - - + -
212B LEU* 3.6 41.1 - - + -
327B VAL* 5.8 2.5 - - + +
330B SER* 3.3 43.5 - - - +
331B PHE* 4.0 4.7 - - - -
334B ILE* 3.5 32.3 - - + -
396B ASN 3.1 8.7 + - - +
397B GLN* 3.0 7.4 + - - +
399B ASN* 1.3 75.2 - - - +
401B LYS* 1.3 64.4 + - - +
403B ALA* 3.0 5.2 + - + +
404B LEU* 2.9 31.6 + - + +
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Residues in contact with LYS 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397B GLN 3.0 13.1 + - - +
398B LEU* 3.5 10.5 - - + +
400B ILE* 1.3 76.7 - - - +
402B SER* 1.3 63.1 + - - +
404B LEU* 3.0 15.0 + - + +
405B GLY 2.9 16.1 + - - -
406B THR* 3.2 37.1 + - - +
407B LEU* 3.8 17.7 - - + -
408B ASN* 4.7 3.6 - - - +
411B ASP* 2.8 42.7 + - + +
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Residues in contact with SER 402 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B GLN* 3.6 18.0 + - - +
107B LEU* 4.1 17.4 - - - +
220B ASN* 4.1 4.9 - - - +
398B LEU 2.8 20.2 + - - -
399B ASN* 3.5 4.3 - - - -
401B LYS* 1.3 74.4 - - - +
403B ALA* 1.3 58.4 + - - +
405B GLY* 2.8 20.3 + - - -
407B LEU* 3.7 23.3 - - - +
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Residues in contact with ALA 403 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B ALA* 3.5 9.9 - - - +
220B ASN* 3.3 25.8 - - - +
323B VAL* 4.0 3.0 - - + +
326B THR* 3.3 37.9 - - + +
327B VAL* 4.2 15.5 - - + -
330B SER* 4.5 0.2 - - - +
399B ASN 2.7 19.1 + - - +
400B ILE* 3.0 9.8 + - + +
402B SER* 1.3 71.6 - - - +
404B LEU* 1.3 59.8 + - + +
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Residues in contact with LEU 404 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212B LEU* 3.0 58.8 - - + +
215B GLU* 3.9 21.8 - - + +
216B ALA* 3.3 19.3 - - + +
219B ARG* 3.1 14.7 - - - +
220B ASN* 3.0 19.8 + - - -
327B VAL* 4.8 3.6 - - + -
400B ILE* 2.9 21.5 + - + +
401B LYS* 3.3 15.5 - - + +
403B ALA* 1.3 77.9 - - + +
405B GLY* 1.3 58.8 + - - +
406B THR* 3.5 17.0 - - + +
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Residues in contact with GLY 405 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B GLN* 3.1 20.1 + - - -
219B ARG* 3.7 22.8 + - - +
220B ASN* 4.0 5.2 - - - -
221B LEU* 4.1 12.9 - - - +
401B LYS 2.9 0.4 + - - -
402B SER 2.8 16.6 + - - -
403B ALA 3.2 0.4 - - - -
404B LEU* 1.3 79.2 - - - +
406B THR* 1.3 62.6 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il