Contacts of the helix formed by residues 368 - 405 (chain C) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 368 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362C TYR* 3.6 2.0 - - - -
366C THR 4.3 0.6 + - - -
367C SER* 1.3 75.0 - - - +
369C ILE* 1.3 61.5 + - - +
370C VAL* 3.1 24.1 + - + +
371C ASP* 2.9 57.4 + - - +
372C VAL* 3.1 8.3 + - - +
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Residues in contact with ILE 369 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136C GLN* 4.1 16.6 - - + +
140C THR* 3.6 29.2 - - + -
153C ASP* 3.7 34.9 + - - +
156C ASN* 4.5 11.0 - - + +
157C ALA* 4.7 1.3 - - + +
362C TYR* 3.2 25.4 - - + -
368C THR* 1.3 70.9 + - - +
370C VAL* 1.3 73.9 + - + +
372C VAL* 2.9 8.0 + - + +
373C LEU* 2.7 59.8 + - + +
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Residues in contact with VAL 370 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A ASP* 4.3 24.0 - - - +
374A ASP* 5.9 2.7 - - - +
156C ASN* 4.1 17.9 - - - +
160C GLN* 5.4 3.6 - - - +
368C THR* 3.1 12.8 + - - +
369C ILE* 1.3 88.7 - - + +
371C ASP* 1.3 60.3 + - - +
373C LEU* 4.7 4.7 - - - -
374C ASP* 2.9 52.4 + - - +
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Residues in contact with ASP 371 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156B ASN* 5.2 4.1 + - - -
370B VAL* 4.2 27.0 - - - +
358C MET* 3.1 45.6 - - + +
368C THR* 2.9 42.3 + - + +
370C VAL* 1.3 81.8 - - - +
372C VAL* 1.3 54.4 + - - +
374C ASP* 4.1 3.4 - - - +
375C ALA* 3.2 20.4 + - - +
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Residues in contact with VAL 372 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136C GLN* 3.2 40.6 - - + +
355C LEU* 3.6 0.8 - - + +
358C MET* 3.5 33.9 - - + +
359C GLU* 3.9 12.1 - - + -
362C TYR* 3.6 19.7 - - + -
367C SER* 4.9 0.7 - - - -
368C THR 3.4 13.0 - - - +
369C ILE* 2.9 11.5 + - + +
371C ASP* 1.3 73.7 - - - +
373C LEU* 1.3 61.6 + - - +
374C ASP 3.1 1.6 - - - -
375C ALA* 3.1 3.3 + - - +
376C THR* 2.9 34.2 + - - +
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Residues in contact with LEU 373 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C ILE* 4.3 28.2 - - + +
136C GLN* 4.4 17.7 - - + -
156C ASN* 3.6 14.6 - - - +
157C ALA* 3.7 23.3 - - + -
160C GLN* 3.3 40.4 - - + +
369C ILE* 2.7 43.0 + - + +
370C VAL* 4.2 2.2 - - - +
372C VAL* 1.3 73.9 - - + +
374C ASP* 1.3 59.1 + - - +
376C THR* 3.6 7.5 - - - +
377C THR* 3.2 27.4 + - - -
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Residues in contact with ASP 374 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160C GLN* 4.1 11.6 + - - +
370C VAL* 2.9 35.0 + - - +
371C ASP* 4.1 4.5 - - - +
373C LEU* 1.3 76.8 - - - +
375C ALA* 1.3 60.4 + - - +
376C THR 3.1 1.6 - - - -
377C THR* 3.8 6.4 - - - +
378C THR* 2.9 33.1 + - - -
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Residues in contact with ALA 375 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351C ALA 4.5 2.7 - - - +
354C SER* 4.3 5.4 - - - +
355C LEU* 3.4 38.9 - - + +
358C MET* 4.2 10.3 - - + -
371C ASP 3.2 18.3 + - - +
372C VAL 3.1 1.7 + - - +
374C ASP* 1.3 77.3 - - - +
376C THR* 1.3 57.2 + - - +
378C THR* 3.3 7.0 + - - -
379C LEU* 3.0 29.1 + - - +
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Residues in contact with THR 376 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C GLN* 4.2 10.3 - - + +
132C ALA* 4.5 13.1 - - + +
133C ILE* 4.1 25.6 - - + -
136C GLN* 5.2 4.9 - - - +
355C LEU* 3.2 24.2 - - - +
359C GLU* 5.4 1.4 + - - -
372C VAL* 2.9 23.4 + - - +
373C LEU* 3.6 11.0 - - - +
375C ALA* 1.3 75.3 - - - +
377C THR* 1.3 64.0 + - - +
379C LEU* 3.5 1.4 + - - +
380C TYR* 3.3 37.6 + - + -
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Residues in contact with THR 377 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C GLN* 3.2 23.8 + - - +
133C ILE* 5.1 1.7 - - - +
160C GLN* 4.3 7.8 + - - -
373C LEU 3.2 15.6 + - - -
374C ASP* 3.9 7.0 - - - +
375C ALA 3.4 0.2 - - - -
376C THR* 1.3 79.5 - - - +
378C THR* 1.3 64.1 + - - +
380C TYR 3.6 0.7 + - - -
381C ASN* 3.3 36.6 + - - +
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Residues in contact with THR 378 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159B ALA* 5.4 9.9 - - + -
160B GLN* 6.5 1.3 - - + -
163B THR* 5.5 6.1 - - - +
351C ALA* 3.9 19.1 - - + -
374C ASP 2.9 23.0 + - - -
375C ALA* 3.5 8.0 - - - -
377C THR* 1.3 80.4 - - - +
379C LEU* 1.3 61.8 + - - +
381C ASN* 3.4 6.0 + - - +
382C ALA* 3.3 22.2 + - + +
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Residues in contact with LEU 379 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348C VAL* 3.5 19.1 - - + +
351C ALA* 3.6 13.0 - - + +
352C GLN* 3.4 59.5 - - - +
355C LEU* 4.0 18.6 - - + -
375C ALA 3.0 16.5 + - - +
376C THR 3.8 4.0 - - - +
377C THR 3.3 0.2 - - - -
378C THR* 1.3 73.5 - - - +
380C TYR* 1.3 74.1 + - + +
381C ASN 2.9 10.3 + - - -
382C ALA* 3.3 3.3 + - - +
383C LYS* 2.9 38.6 + - + +
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Residues in contact with TYR 380 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C TYR* 3.7 18.8 - + + +
128C ALA* 3.6 32.2 + - + +
129C GLN* 3.3 45.7 - - + +
132C ALA* 4.4 13.0 - - + +
135C ARG* 5.1 4.7 + - - -
355C LEU* 5.4 3.8 - - + -
376C THR* 3.3 26.3 + - + +
377C THR 3.6 1.3 + - - +
378C THR 3.5 0.4 - - - -
379C LEU* 1.3 91.7 - - + +
381C ASN* 1.3 64.1 + - - +
383C LYS* 3.5 35.3 - - + -
384C GLN* 3.1 28.3 + - - +
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Residues in contact with ASN 381 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C GLN* 5.0 5.3 + - - -
377C THR* 3.3 27.4 + - - +
378C THR* 3.7 9.7 - - - +
379C LEU 3.0 0.6 - - - -
380C TYR* 1.3 84.0 + - - +
382C ALA* 1.3 61.0 + - - +
383C LYS 2.9 0.9 - - - -
384C GLN* 2.8 11.3 + - - +
385C GLU* 2.7 42.2 + - + +
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Residues in contact with ALA 382 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163B THR* 5.8 2.9 - - - +
344C TYR* 4.3 7.7 - - + +
347C ALA* 4.0 26.5 - - + +
348C VAL* 3.2 27.4 - - + +
351C ALA* 4.8 2.7 - - + -
378C THR* 3.3 10.9 + - + +
379C LEU 3.8 6.7 - - - +
381C ASN* 1.3 77.7 - - - +
383C LYS* 1.3 57.6 + - - +
385C GLU* 3.8 8.3 - - - +
386C LEU* 2.9 24.6 + - - +
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Residues in contact with LYS 383 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C TYR* 3.1 38.7 + - + +
348C VAL* 3.6 25.9 - - + +
352C GLN* 4.3 8.1 - - - -
379C LEU* 2.9 34.2 + - + +
380C TYR* 3.5 40.8 - - + -
381C ASN 2.9 0.2 - - - -
382C ALA* 1.3 78.2 - - - +
384C GLN* 1.3 57.2 + - - +
386C LEU* 3.6 4.0 + - - +
387C ALA* 3.1 20.3 + - - +
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Residues in contact with GLN 384 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118C ASN* 5.0 0.3 - - - +
121C ASP* 6.0 0.7 - - + -
122C VAL* 3.1 36.2 - - + +
125C TYR* 3.0 41.4 - - + +
126C THR* 4.1 14.6 + - - +
129C GLN* 5.0 4.4 + - - -
380C TYR* 3.1 21.2 + - - +
381C ASN* 2.8 17.5 + - - +
383C LYS* 1.3 71.3 - - - +
385C GLU* 1.3 55.4 + - + +
387C ALA* 2.9 3.8 + - - +
388C ASN* 2.6 37.8 + - - +
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Residues in contact with GLU 385 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344C TYR* 3.5 48.4 - - + +
381C ASN* 2.7 27.8 + - + +
382C ALA* 3.8 1.1 - - - +
384C GLN* 1.3 72.8 - - + +
386C LEU* 1.3 57.9 + - - +
388C ASN* 3.3 10.4 + - - +
389C ALA* 2.7 30.8 + - - +
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Residues in contact with LEU 386 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341C ILE* 3.2 37.7 - - + +
344C TYR* 3.7 12.5 - - + +
345C LYS* 3.5 28.0 - - + +
348C VAL* 4.1 14.1 - - + -
382C ALA 2.9 18.7 + - - +
383C LYS 3.7 4.5 - - - +
385C GLU* 1.3 75.7 - - - +
387C ALA* 1.3 65.0 + - - +
389C ALA* 3.1 12.3 + - - +
390C ARG* 3.1 45.2 + - - +
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Residues in contact with ALA 387 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118C ASN* 4.2 1.6 - - - +
121C ASP* 3.4 26.7 - - + +
125C TYR* 3.7 19.7 - - + +
383C LYS 3.1 14.4 + - - +
384C GLN* 2.9 9.3 + - - +
386C LEU* 1.3 77.2 - - - +
388C ASN* 1.3 62.5 + - - +
390C ARG* 3.4 23.6 + - - +
391C TYR* 3.3 22.0 + - - -
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Residues in contact with ASN 388 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118C ASN* 2.7 40.1 + - - +
122C VAL* 5.6 2.8 - - - +
384C GLN 2.6 20.6 + - - +
385C GLU* 3.6 13.0 - - - +
387C ALA* 1.3 71.7 - - - +
389C ALA* 1.3 65.5 + - - +
391C TYR* 3.3 4.8 + - - +
392C ASN* 3.2 39.3 + - - +
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Residues in contact with ALA 389 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C SER* 3.6 7.5 + - - +
340C SER* 4.5 9.9 - - - +
341C ILE* 3.6 31.3 - - + +
344C TYR* 4.6 6.7 - - + -
385C GLU 2.7 20.7 + - - +
386C LEU* 3.1 7.4 + - - +
388C ASN* 1.3 73.5 - - - +
390C ARG* 1.3 64.7 + - - +
392C ASN* 3.3 9.7 + - - +
393C TYR* 3.0 20.1 + - - +
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Residues in contact with ARG 390 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125C TYR* 4.9 7.1 + - - -
196C LEU* 3.8 18.3 - - + +
198C VAL* 3.2 38.0 + - - +
201C PHE* 3.6 42.3 - - + +
341C ILE* 3.4 19.0 - - + +
345C LYS* 5.5 6.3 - - - +
386C LEU* 3.1 49.2 + - - +
387C ALA* 3.6 21.0 + - - +
388C ASN 3.2 0.2 - - - -
389C ALA* 1.3 76.5 - - - +
391C TYR* 1.3 64.4 + - - +
393C TYR* 3.0 13.5 + - - +
394C LEU* 3.1 16.2 + - - +
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Residues in contact with TYR 391 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114C PHE* 3.9 32.9 - + + +
117C LEU* 3.5 40.5 - - + +
118C ASN* 3.6 33.0 - - + -
121C ASP* 3.2 31.7 + - - -
195C ALA* 5.3 1.4 - - - +
196C LEU* 3.8 35.3 + - + +
387C ALA 3.3 18.1 + - - -
388C ASN* 3.3 6.5 + - - +
390C ARG* 1.3 75.5 - - - +
392C ASN* 1.3 67.9 + - - +
394C LEU* 3.0 19.0 + - + +
395C ILE* 3.0 17.3 + - + +
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Residues in contact with ASN 392 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C SER* 4.0 5.8 - - - +
388C ASN* 3.2 29.4 + - - +
389C ALA* 3.6 10.3 - - - +
391C TYR* 1.3 80.0 - - - +
393C TYR* 1.3 57.7 + - - +
395C ILE* 3.7 9.2 - - - +
396C ASN* 2.7 43.6 + - - +
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Residues in contact with TYR 393 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201C PHE* 3.6 21.8 - + - -
202C LYS 4.3 3.8 - - - -
203C THR* 3.4 16.5 - - + -
204C ASP* 2.7 27.3 + - - +
334C ILE* 3.9 20.9 - - + -
337C SER* 3.0 18.3 + - - +
338C ILE* 3.3 39.0 - - + -
341C ILE* 3.7 16.6 - - + -
389C ALA 3.0 5.9 + - - -
390C ARG 3.2 7.9 - - - +
392C ASN* 1.3 75.9 - - - +
394C LEU* 1.3 74.0 + - + +
396C ASN* 3.2 3.3 + - - +
397C GLN* 2.9 56.0 + - - +
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Residues in contact with LEU 394 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114C PHE* 3.6 38.1 - - + -
196C LEU* 4.2 29.6 - - + -
201C PHE* 3.9 17.9 - - + -
390C ARG 3.1 11.2 + - - +
391C TYR* 3.0 12.2 + - + +
393C TYR* 1.3 92.4 - - + +
395C ILE* 1.3 62.7 + - - +
397C GLN* 3.3 19.4 + - - +
398C LEU* 3.4 12.5 + - - +
415C LEU* 3.7 27.9 - - + +
418C ALA* 5.2 8.5 - - + -
419C LEU* 5.4 0.9 - - + -
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Residues in contact with ILE 395 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107C LEU* 4.6 6.1 - - + -
110C ALA* 4.4 4.3 - - + -
111C THR* 4.0 38.4 - - + +
114C PHE* 3.2 37.5 - - + -
391C TYR* 3.0 15.5 + - + +
392C ASN* 3.7 11.2 - - - +
394C LEU* 1.3 69.8 - - - +
396C ASN* 1.3 62.9 + - - +
397C GLN 3.0 1.8 - - - -
398C LEU* 2.8 26.7 + - + +
399C ASN* 2.9 26.9 + - - +
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Residues in contact with ASN 396 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330C SER* 4.6 3.3 - - - +
333C ASN* 3.5 30.4 + - - +
334C ILE* 3.9 19.1 - - + -
337C SER* 3.6 16.6 + - - -
392C ASN* 2.7 39.8 + - - +
393C TYR 3.6 4.9 - - - +
395C ILE* 1.3 72.4 - - - +
397C GLN* 1.3 61.4 + - - +
399C ASN* 3.4 19.6 + - - +
400C ILE* 3.2 28.1 + - - +
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Residues in contact with GLN 397 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204C ASP* 4.5 11.1 + - - +
334C ILE* 3.4 24.5 - - + +
393C TYR* 2.9 49.9 + - + +
394C LEU* 3.4 7.8 - - - +
395C ILE 2.9 1.0 + - - -
396C ASN* 1.3 72.6 - - - +
398C LEU* 1.3 73.6 + - + +
399C ASN 3.1 0.5 + - - -
400C ILE* 3.1 6.8 + - - +
401C LYS* 3.1 24.0 + - - +
415C LEU* 3.7 22.2 - - - +
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Residues in contact with LEU 398 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106C ILE* 5.1 3.8 - - + -
107C LEU* 4.9 11.0 - - + -
110C ALA* 3.4 33.0 - - + -
394C LEU 3.4 6.0 + - - +
395C ILE* 2.8 18.2 + - + +
397C GLN* 1.3 84.1 - - + +
399C ASN* 1.3 56.8 + - - +
401C LYS* 3.1 9.8 + - + +
402C SER* 2.9 27.4 + - - -
407C LEU* 4.0 26.8 - - + +
411C ASP* 4.1 14.6 - - + +
412C LEU* 4.6 6.7 - - + -
415C LEU* 3.3 36.3 - - + -
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Residues in contact with ASN 399 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107C LEU* 3.6 29.0 - - - +
326C THR* 5.6 0.5 - - - +
330C SER* 4.0 15.9 + - - +
395C ILE* 2.9 20.3 + - - +
396C ASN* 3.5 34.5 + - - +
397C GLN 3.1 0.2 - - - -
398C LEU* 1.3 76.3 - - - +
400C ILE* 1.3 57.8 + - - +
402C SER* 2.8 10.2 + - - -
403C ALA* 2.8 27.9 + - - +
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Residues in contact with ILE 400 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206C PRO* 4.4 5.4 - - + -
212C LEU* 3.5 39.9 - - + -
327C VAL* 5.7 2.0 - - + +
330C SER* 3.3 44.9 - - - +
331C PHE* 4.1 5.2 - - - +
334C ILE* 3.5 32.1 - - + -
396C ASN 3.2 8.9 + - - +
397C GLN* 3.1 6.6 + - - +
399C ASN* 1.3 74.5 - - - +
401C LYS* 1.3 65.5 + - - +
403C ALA* 3.3 4.5 + - + +
404C LEU* 3.0 32.9 + - + +
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Residues in contact with LYS 401 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397C GLN 3.1 13.5 + - - +
398C LEU* 3.1 11.6 + - + +
399C ASN 3.0 0.4 - - - -
400C ILE* 1.3 78.0 - - + +
402C SER* 1.3 56.9 + - - +
404C LEU* 3.1 12.6 + - + +
405C GLY 2.9 21.8 + - - -
406C THR* 3.1 38.1 + - - +
407C LEU* 3.7 17.7 - - + -
408C ASN* 4.8 3.6 - - - +
411C ASP* 2.9 41.0 + - + +
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Residues in contact with SER 402 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103C GLN* 3.6 17.7 + - - +
107C LEU* 4.1 22.6 - - - +
220C ASN* 4.1 5.5 - - - +
398C LEU 2.9 10.9 + - - -
399C ASN* 2.8 9.9 + - - -
401C LYS* 1.3 77.2 - - - +
403C ALA* 1.3 58.0 + - - +
405C GLY* 2.8 19.4 + - - -
407C LEU* 3.8 15.9 - - - +
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Residues in contact with ALA 403 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216C ALA* 3.3 15.1 - - - +
220C ASN* 3.5 19.3 - - - +
323C VAL* 4.1 2.8 - - - +
326C THR* 3.6 32.3 - - + +
327C VAL* 3.9 22.7 - - + -
330C SER* 4.4 0.9 - - - +
399C ASN 2.8 14.7 + - - +
400C ILE* 3.6 12.1 - - + +
402C SER* 1.3 73.1 - - - +
404C LEU* 1.3 61.7 + - + +
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Residues in contact with LEU 404 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212C LEU* 2.9 59.5 - - + +
215C GLU* 3.8 21.5 - - + +
216C ALA* 3.6 15.9 - - + +
219C ARG* 3.0 15.8 - - - +
220C ASN 3.0 19.0 + - - -
327C VAL* 4.8 2.9 - - + -
400C ILE* 3.0 23.9 + - + +
401C LYS* 3.4 15.3 - - + +
402C SER 3.1 0.2 - - - -
403C ALA* 1.3 77.1 - - - +
405C GLY* 1.3 59.4 + - - +
406C THR* 3.4 17.3 - - + +
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Residues in contact with GLY 405 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103C GLN* 3.2 20.1 + - - -
219C ARG* 3.8 25.0 + - - +
220C ASN* 4.0 4.9 - - - -
221C LEU* 4.3 9.9 - - - +
401C LYS 2.9 1.0 + - - -
402C SER 2.8 18.1 + - - -
404C LEU* 1.3 78.9 - - - +
406C THR* 1.3 63.3 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il