Contacts of the helix formed by residues 77 - 145 (chain A) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 77 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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74A SER* 3.1 21.4 + - - +
76A PHE* 1.3 74.3 - - - +
78A MET* 1.3 65.0 + - - +
79A SER* 3.0 17.0 + - - -
80A LYS* 2.7 53.1 + - + +
81A TRP* 3.5 14.7 - - + +
247A THR* 3.1 27.3 - - + +
248A LEU 5.5 0.2 - - - +
249A ASP* 4.6 3.9 - - - +
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Residues in contact with MET 78 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76A PHE* 3.5 31.3 - - + -
77A ASP* 1.3 72.9 + - - +
79A SER* 1.3 58.9 + - - +
81A TRP* 2.9 25.2 + - + +
82A ARG* 2.8 55.9 + - - +
242A ASP* 4.0 9.2 - - + +
245A LEU* 3.3 35.7 - - + -
246A PRO 5.3 0.2 + - - -
247A THR* 4.9 1.8 - - - +
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Residues in contact with SER 79 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A ASP* 3.0 17.3 + - - -
78A MET* 1.3 77.6 - - - +
80A LYS* 1.3 61.1 + - - +
82A ARG* 3.4 9.2 - - - +
83A ALA* 2.9 30.8 + - - +
239A GLN* 5.8 5.0 + - - -
242A ASP* 4.1 14.6 + - - +
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Residues in contact with LYS 80 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A ALA 4.2 5.0 - - - +
37A PRO* 3.3 46.2 - - + +
38A LEU* 3.3 25.7 - - + +
74A SER* 3.5 17.6 + - - +
77A ASP* 2.7 42.0 + - + +
79A SER* 1.3 82.3 + - - +
81A TRP* 1.3 62.0 + - - +
83A ALA* 3.7 6.5 - - - +
84A LEU* 3.5 13.2 + - - +
249A ASP* 3.8 13.1 + - - -
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Residues in contact with TRP 81 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A LEU* 3.4 40.3 - - + +
75A ILE 5.3 5.3 + - - -
76A PHE* 5.6 2.5 - + - +
77A ASP 3.5 28.2 - - - +
78A MET* 2.9 24.5 + - + +
80A LYS* 1.3 73.8 - - - +
82A ARG* 1.3 68.3 + - - +
83A ALA 3.0 1.8 - - - -
84A LEU* 2.6 28.2 + - + +
85A THR* 2.9 15.6 + - - +
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Residues in contact with ARG 82 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78A MET* 2.8 39.1 + - - +
79A SER* 3.4 11.4 - - - +
81A TRP* 1.3 76.2 - - - +
83A ALA* 1.3 58.2 + - - +
85A THR* 3.0 7.5 + - - -
86A LEU* 2.9 35.6 + - + +
235A GLU* 3.0 33.4 + - - -
238A ARG* 3.2 32.5 - - - +
239A GLN* 3.4 41.3 - - + +
242A ASP* 2.8 25.6 + - - +
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Residues in contact with ALA 83 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A ALA* 4.1 10.0 - - + +
79A SER 2.9 18.3 + - - +
80A LYS* 3.7 8.7 - - - +
82A ARG* 1.3 76.5 - - - +
84A LEU* 1.3 63.6 + - - +
86A LEU* 3.3 10.3 + - - +
87A GLN* 2.9 24.4 + - - +
239A GLN* 5.0 5.1 - - - +
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Residues in contact with LEU 84 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A ILE* 3.3 39.5 - - + +
34A ALA* 3.7 17.2 + - + +
35A ARG* 3.4 42.6 - - + +
38A LEU* 4.3 12.1 - - + -
80A LYS 3.5 6.9 + - - +
81A TRP* 2.6 25.4 + - + +
83A ALA* 1.3 73.8 - - - +
85A THR* 1.3 64.9 + - - +
87A GLN* 3.0 11.4 + - - +
88A GLU* 3.1 29.1 + - + +
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Residues in contact with THR 85 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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81A TRP* 2.9 12.5 + - - +
82A ARG* 3.3 9.8 - - - -
84A LEU* 1.3 76.4 - - - +
86A LEU* 1.3 59.3 + - - +
88A GLU* 2.8 36.5 + - - +
89A LYS* 2.9 33.7 + - + +
235A GLU* 3.3 26.9 + - + +
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Residues in contact with LEU 86 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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82A ARG* 2.9 30.3 + - + +
83A ALA* 3.7 5.4 - - - +
85A THR* 1.3 74.5 - - - +
87A GLN* 1.3 58.1 + - - +
89A LYS* 3.2 4.8 + - - +
90A ALA* 2.9 30.5 + - - +
232A LEU* 3.4 26.3 - - + +
235A GLU* 3.1 36.6 - - + -
236A GLN* 4.1 12.3 - - + +
239A GLN* 3.1 42.2 - - + +
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Residues in contact with GLN 87 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A ALA* 3.1 24.1 - - - +
30A LYS* 3.1 33.7 - - + +
31A ILE* 3.4 31.3 - - - +
34A ALA* 3.3 27.4 - - + -
83A ALA 2.9 9.6 + - - +
84A LEU 3.0 2.4 + - - +
86A LEU* 1.3 75.9 - - - +
88A GLU* 1.3 62.3 + - - +
90A ALA* 3.6 10.8 - - - +
91A ALA 3.2 15.6 + - - -
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Residues in contact with GLU 88 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A PHE* 5.6 0.5 - - - -
31A ILE* 3.6 33.9 - - + +
84A LEU* 3.1 28.3 - - - +
85A THR* 2.8 26.4 + - - +
87A GLN* 1.3 74.6 - - - +
89A LYS* 1.3 67.6 + - + +
90A ALA 3.1 1.1 - - - -
91A ALA* 3.1 4.9 + - - +
92A GLY* 3.0 18.5 + - - -
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Residues in contact with LYS 89 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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85A THR* 2.9 27.6 + - + +
86A LEU* 3.7 6.7 - - + +
88A GLU* 1.3 76.5 - - + +
90A ALA* 1.3 56.7 + - - +
92A GLY* 3.2 3.1 + - - -
93A ILE* 3.0 34.2 + - + +
228A LEU* 5.1 1.5 - - - +
231A ASP* 3.1 33.8 + - - +
232A LEU* 4.0 17.0 - - + -
235A GLU* 3.6 40.8 - - + -
238A ARG* 5.7 0.4 - - - +
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Residues in contact with ALA 90 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A ALA* 5.2 2.0 - - + -
86A LEU 2.9 17.7 + - - +
87A GLN* 3.6 18.8 - - - +
88A GLU 3.1 0.2 - - - -
89A LYS* 1.3 74.9 - - - +
91A ALA* 1.3 65.6 + - - +
93A ILE* 3.2 11.2 + - - +
94A GLN* 2.9 22.7 + - - +
232A LEU* 5.0 9.4 - - + +
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Residues in contact with ALA 91 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A ALA* 3.5 32.5 + - - +
28A PHE* 3.0 42.1 - - + -
31A ILE* 3.8 6.3 - - + -
87A GLN* 3.2 7.1 + - - +
88A GLU 3.1 9.0 + - - +
90A ALA* 1.3 78.2 - - - +
92A GLY* 1.3 57.4 + - - +
94A GLN* 3.1 1.9 + - - +
95A ASP 2.9 24.3 + - - -
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Residues in contact with GLY 92 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A PHE* 4.2 5.5 - - - -
88A GLU 3.0 13.0 + - - -
89A LYS* 3.2 5.4 + - - -
90A ALA 3.0 0.2 - - - -
91A ALA* 1.3 77.7 - - - +
93A ILE* 1.3 57.3 + - - +
95A ASP* 2.9 23.3 + - - +
96A VAL* 3.1 16.1 + - - +
228A LEU* 4.0 9.0 - - - -
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Residues in contact with ILE 93 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89A LYS* 3.0 14.3 + - + +
90A ALA* 3.6 8.1 - - - +
92A GLY* 1.3 75.5 - - - +
94A GLN* 1.3 63.6 + - - +
96A VAL* 3.3 4.2 + - - +
97A THR* 3.0 22.3 + - - +
225A GLN* 4.0 20.1 - - + +
228A LEU* 3.4 29.8 - - + +
229A SER* 3.6 41.3 - - - +
232A LEU* 4.1 22.4 - - + -
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Residues in contact with GLN 94 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A SER* 4.1 6.9 + - - +
23A ASP* 3.6 28.3 - - - +
24A ARG* 3.3 27.7 - - - +
27A ALA* 3.5 18.0 - - + +
90A ALA 2.9 14.0 + - - +
91A ALA 3.1 8.7 + - - +
93A ILE* 1.3 77.3 - - - +
95A ASP* 1.3 56.9 + - - +
97A THR* 3.2 25.0 + - - +
98A TYR* 3.0 24.9 + - - +
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Residues in contact with ASP 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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24A ARG* 3.0 34.4 + - - +
28A PHE* 4.1 13.9 - - + -
91A ALA 2.9 12.5 + - - +
92A GLY* 2.9 11.2 + - - +
94A GLN* 1.3 72.7 - - - +
96A VAL* 1.3 68.2 + - + +
97A THR 2.9 1.1 - - - -
98A TYR* 2.8 16.7 + - - +
99A GLN* 2.9 30.6 + - - +
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Residues in contact with VAL 96 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92A GLY 3.1 3.3 + - - +
93A ILE 3.3 2.7 + - - +
95A ASP* 1.3 76.0 - - + +
97A THR* 1.3 62.4 + - - +
99A GLN* 3.4 16.6 + - - +
100A THR* 3.0 21.5 + - - -
221A LEU* 3.5 23.1 - - + +
224A LEU* 3.5 32.3 - - + -
225A GLN* 3.3 30.3 - - + +
228A LEU* 3.5 26.0 - - + -
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Residues in contact with THR 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93A ILE* 3.0 13.5 + - - +
94A GLN* 3.2 29.7 + - - +
95A ASP 2.9 0.4 - - - -
96A VAL* 1.3 75.0 - - - +
98A TYR* 1.3 68.8 + - - +
100A THR* 2.9 7.6 + - - -
101A ASP* 2.8 38.2 + - - +
225A GLN* 3.0 26.9 + - - +
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Residues in contact with TYR 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A LEU* 3.4 31.4 + - + +
20A SER* 3.1 29.6 - - - +
21A ALA* 3.4 35.4 - - + +
24A ARG* 3.5 42.5 + - + -
94A GLN 3.0 9.3 + - - +
95A ASP* 2.8 14.9 + - - +
97A THR* 1.3 75.7 - - - +
99A GLN* 1.3 63.1 + - + +
101A ASP* 3.1 3.6 + - - +
102A GLN* 2.9 61.4 + - + +
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Residues in contact with GLN 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A ASP* 2.9 31.1 + - - +
96A VAL* 3.5 27.2 - - - +
98A TYR* 1.3 76.9 - - + +
100A THR* 1.3 56.4 + - - +
102A GLN* 2.8 40.0 + - - +
103A GLN* 3.0 15.4 + - - +
221A LEU* 3.6 24.9 - - + +
224A LEU* 5.6 2.1 - - - +
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Residues in contact with THR 100 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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96A VAL 3.0 8.4 + - - -
97A THR* 2.9 12.0 + - - -
99A GLN* 1.3 78.1 - - - +
101A ASP* 1.3 67.1 + - - +
103A GLN* 3.3 7.4 + - + +
104A THR* 3.1 26.7 + - - +
221A LEU* 3.0 39.0 - - + +
222A SER* 5.2 8.2 - - - +
225A GLN* 4.3 6.4 + - - +
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Residues in contact with ASP 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A LEU* 3.2 18.7 - - + +
20A SER* 2.7 32.6 + - - +
97A THR* 2.8 29.7 + - - +
98A TYR 3.4 7.6 - - - +
100A THR* 1.3 78.9 - - - +
102A GLN* 1.3 63.7 + - - +
104A THR* 3.7 10.5 + - - +
105A LEU* 3.4 15.2 + - - +
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Residues in contact with GLN 102 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A TYR* 5.1 1.9 + - - -
17A LEU* 3.6 21.1 - - + +
98A TYR* 2.9 50.0 + - + +
99A GLN* 2.8 32.7 + - - +
101A ASP* 1.3 76.2 - - - +
103A GLN* 1.3 64.9 + - + +
105A LEU* 3.1 14.7 + - - +
106A ILE* 3.5 13.7 + - - +
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Residues in contact with GLN 103 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99A GLN 3.0 15.6 + - - +
100A THR* 3.3 8.8 + - + +
102A GLN* 1.3 76.3 - - + +
104A THR* 1.3 57.9 + - - +
106A ILE* 2.8 36.1 + - - +
107A LEU* 3.1 7.9 + - - +
221A LEU* 4.0 20.4 - - + +
402A SER* 3.6 23.2 + - - +
405A GLY* 3.4 21.0 + - - -
406A THR 3.5 0.6 - - - +
407A LEU* 3.1 53.6 + - + +
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Residues in contact with THR 104 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100A THR* 3.1 19.6 + - - +
101A ASP* 3.8 11.2 + - - +
102A GLN 3.2 0.2 - - - -
103A GLN* 1.3 79.3 - - - +
105A LEU* 1.3 62.1 + - - +
107A LEU* 4.6 7.2 - - - +
108A ASN* 3.0 45.9 + - - +
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Residues in contact with LEU 105 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A TYR* 4.3 10.3 - - + +
10A ALA* 4.7 2.5 - - + -
11A ARG* 3.7 32.1 - - + +
14A ASN* 2.9 41.7 - - + +
17A LEU* 3.6 28.7 - - + -
101A ASP 3.4 9.4 + - - +
102A GLN 3.1 11.9 + - - +
103A GLN 3.1 0.2 + - - -
104A THR* 1.3 79.8 - - - +
106A ILE* 1.3 57.4 + - - +
108A ASN* 4.7 2.5 - - + -
109A THR* 2.9 47.3 + - - +
185A ILE* 4.1 4.9 - - + +
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Residues in contact with ILE 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A TYR* 3.6 36.6 - - + +
102A GLN 3.5 8.7 + - - +
103A GLN* 2.8 12.6 + - - +
105A LEU* 1.3 73.9 - - - +
107A LEU* 1.3 68.9 + - - +
109A THR* 2.9 4.2 + - - -
110A ALA* 2.8 24.6 + - + +
398A LEU* 5.4 1.6 - - + -
407A LEU* 3.7 30.3 - - + +
408A ASN* 3.6 36.3 - - - +
409A GLU* 3.9 4.7 - - - +
412A LEU* 4.3 22.5 - - + +
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Residues in contact with LEU 107 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103A GLN 3.1 9.0 + - - +
104A THR* 4.1 6.5 - - - +
106A ILE* 1.3 82.0 - - - +
108A ASN* 1.3 67.5 - - - +
110A ALA* 3.8 5.0 - - - +
111A THR* 2.9 48.3 + - - +
395A ILE* 4.8 7.6 - - + -
398A LEU* 4.8 11.4 - - + +
399A ASN* 3.9 23.8 - - - +
402A SER* 4.3 25.8 - - - +
407A LEU* 4.4 9.6 - - + -
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Residues in contact with ASN 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A THR* 3.0 42.8 + - - +
105A LEU* 4.3 3.8 - - + +
107A LEU* 1.3 84.2 - - - +
109A THR* 1.3 61.3 + - - +
111A THR* 3.9 4.5 + - - +
112A ALA* 2.9 29.8 + - - +
185A ILE* 3.2 20.2 - - + +
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Residues in contact with THR 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3A LEU* 4.5 8.3 - - + -
6A VAL* 4.5 3.8 - - + -
7A TYR* 3.8 38.7 - - + +
10A ALA* 4.2 5.2 - - - +
105A LEU* 2.9 29.1 + - - +
106A ILE 2.9 3.4 + - - -
108A ASN* 1.3 73.4 - - - +
110A ALA* 1.3 68.1 + - - +
112A ALA* 3.2 4.3 + - - +
113A TYR* 2.9 23.0 + - - +
182A LEU* 4.1 0.5 - - - +
185A ILE* 3.2 23.6 - - - +
186A THR* 4.4 13.9 - - + -
412A LEU* 5.7 0.4 - - + -
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Residues in contact with ALA 110 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3A LEU* 3.6 18.4 - - + +
106A ILE 2.8 15.5 + - - +
107A LEU 3.8 2.2 - - - +
109A THR* 1.3 77.1 - - - +
111A THR* 1.3 57.1 + - - +
113A TYR* 3.1 3.8 + - - +
114A PHE* 2.8 38.7 + - + +
395A ILE* 5.2 0.2 - - + -
398A LEU* 3.5 31.4 - - + -
412A LEU* 4.0 16.1 - - + +
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Residues in contact with THR 111 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A LEU* 2.9 38.9 + - - +
108A ASN* 3.9 7.0 - - - +
110A ALA* 1.3 76.7 - - - +
112A ALA* 1.3 58.4 + - - +
114A PHE* 3.2 1.6 + - - +
115A ASN* 2.7 53.4 + - - +
395A ILE* 4.0 25.9 - - + +
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Residues in contact with ALA 112 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A ASN 2.9 19.6 + - - +
109A THR* 3.2 2.2 + - - +
111A THR* 1.3 76.6 - - - +
113A TYR* 1.3 59.6 + - - +
115A ASN* 3.5 11.0 + - - +
116A VAL* 3.3 28.2 + - - +
178A ALA 4.2 2.4 - - - +
181A GLN* 4.7 6.3 - - + -
182A LEU* 3.3 28.9 - - + +
185A ILE* 3.5 20.4 - - + -
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Residues in contact with TYR 113 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2A ASN* 3.4 8.4 - - - -
3A LEU* 3.2 47.0 + - + -
6A VAL* 4.0 14.8 - - + -
109A THR* 2.9 14.1 + - + +
110A ALA 3.2 8.1 - - - +
112A ALA* 1.3 73.3 - - - +
114A PHE* 1.3 71.8 + + - +
115A ASN 3.1 4.7 - - - -
116A VAL* 3.2 7.3 + - - +
117A LEU* 3.1 40.7 + - + +
182A LEU* 3.5 12.5 - - + +
193A LEU* 3.8 30.7 - - + +
194A ALA* 2.8 34.8 + - - +
419A LEU* 3.6 16.5 - - + +
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Residues in contact with PHE 114 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3A LEU* 4.2 20.4 - - + -
110A ALA* 2.8 22.3 + - + +
111A THR 3.2 3.8 + - - +
113A TYR* 1.3 88.0 - + - +
115A ASN* 1.3 61.6 + - - +
117A LEU* 3.6 17.9 - - + +
118A ASN* 3.0 25.8 + - - +
391A TYR* 4.3 21.4 - + + +
394A LEU* 3.8 34.3 - - + -
395A ILE* 3.5 31.2 - - + -
415A LEU* 4.2 21.3 - - + -
419A LEU* 3.8 24.7 - - + -
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Residues in contact with ASN 115 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A THR* 2.7 47.5 + - - +
112A ALA* 3.6 10.3 - - - +
113A TYR 3.1 0.4 - - - -
114A PHE* 1.3 76.5 - - - +
116A VAL* 1.3 62.6 + - - +
117A LEU 3.0 1.6 - - - -
118A ASN* 4.2 5.2 - - - +
119A ALA* 2.9 31.2 + - - +
178A ALA* 4.1 10.5 - - + +
181A GLN* 6.3 2.2 - - + +
----------------------------------------------------------
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Residues in contact with VAL 116 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A ALA 3.3 12.3 + - - +
113A TYR 3.2 9.5 + - - +
115A ASN* 1.3 78.2 - - - +
117A LEU* 1.3 58.7 + - - +
119A ALA* 3.6 6.6 - - - +
120A ILE* 3.1 27.0 + - + +
175A LEU* 4.5 2.5 - - + -
178A ALA* 3.1 33.0 - - - +
179A VAL* 3.9 24.7 - - + -
182A LEU* 4.1 13.9 - - + -
193A LEU* 3.5 23.1 - - + -
425A THR* 4.0 13.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 117 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113A TYR* 3.1 21.8 + - + +
114A PHE* 3.7 32.5 - - + +
115A ASN 3.0 0.6 - - - -
116A VAL* 1.3 75.5 - - - +
118A ASN* 1.3 66.2 + - - +
119A ALA 3.0 1.1 - - - -
120A ILE* 2.9 20.9 + - + +
121A ASP* 3.1 14.7 + - - +
193A LEU* 4.6 10.1 - - + -
194A ALA 3.8 18.8 - - - +
195A ALA* 3.8 20.6 - - + +
196A LEU 3.8 15.7 - - - +
391A TYR* 3.5 19.3 - - + +
419A LEU* 4.3 0.7 - - + -
423A VAL* 4.1 19.1 - - + -
----------------------------------------------------------
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Residues in contact with ASN 118 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A PHE 3.0 18.3 + - - +
115A ASN* 4.2 6.1 - - - +
117A LEU* 1.3 77.3 - - - +
119A ALA* 1.3 60.6 + - - +
121A ASP* 3.4 5.7 + - - +
122A VAL* 3.1 31.4 + - - +
384A GLN 5.2 0.2 - - - +
387A ALA* 4.2 1.6 - - - +
388A ASN* 3.0 41.2 + - - +
391A TYR* 3.1 34.9 - - + -
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Residues in contact with ALA 119 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A ASN 2.9 20.7 + - - +
116A VAL 3.6 6.5 - - - +
117A LEU 3.0 0.2 - - - -
118A ASN* 1.3 79.8 - - - +
120A ILE* 1.3 60.8 + - - +
122A VAL* 3.6 7.3 + - - +
123A LEU* 3.2 19.9 + - - +
171A ALA 4.3 7.2 - - - +
174A ASN* 4.3 4.5 - - + +
175A LEU* 3.8 31.1 - - + +
178A ALA* 3.9 10.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 120 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A VAL* 3.1 21.3 - - + +
117A LEU* 2.9 16.2 + - + +
119A ALA* 1.3 75.1 - - - +
121A ASP* 1.3 67.2 + - - +
123A LEU* 3.1 7.6 + - + +
124A SER* 2.8 36.5 + - - +
175A LEU* 3.4 19.5 - - + -
193A LEU* 5.8 0.4 - - + -
423A VAL* 3.4 30.1 - - + -
424A SER 3.0 30.1 - - - +
425A THR* 4.2 10.3 - - + -
----------------------------------------------------------
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Residues in contact with ASP 121 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A LEU 3.1 12.6 + - - +
118A ASN* 3.6 10.3 - - - +
119A ALA 3.4 0.2 - - - -
120A ILE* 1.3 82.2 - - - +
122A VAL* 1.3 58.9 + - + +
124A SER* 3.0 6.0 + - - -
125A TYR* 2.8 45.8 + - + +
387A ALA* 3.7 23.7 - - + +
391A TYR* 3.1 31.7 + - - -
----------------------------------------------------------
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Residues in contact with VAL 122 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ASN* 3.1 28.6 + - - +
119A ALA* 3.8 7.9 - - - +
121A ASP* 1.3 78.5 - - + +
123A LEU* 1.3 62.0 + - - +
125A TYR* 4.0 0.5 - - - +
126A THR* 2.8 34.2 + - - +
171A ALA* 3.7 24.5 - - + +
174A ASN* 6.5 0.4 - - + -
384A GLN* 3.5 32.0 + - + +
388A ASN* 5.4 3.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 123 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A ALA 3.2 10.6 + - - +
120A ILE* 3.1 11.4 + - - +
122A VAL* 1.3 80.3 - - - +
124A SER* 1.3 57.8 + - - +
126A THR* 3.1 4.0 + - - -
127A GLN* 2.9 55.5 + - + +
168A GLU* 4.1 14.4 - - + +
171A ALA* 4.1 11.0 - - + +
172A ARG* 3.9 33.0 - - + +
175A LEU* 4.1 11.4 - - + -
427A PRO* 3.3 36.8 - - + -
----------------------------------------------------------
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Residues in contact with SER 124 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A ILE* 2.8 25.8 + - - +
121A ASP* 3.6 6.1 - - - -
123A LEU* 1.3 76.5 - - - +
125A TYR* 1.3 64.4 + - - +
127A GLN* 2.9 17.3 + - - +
128A ALA* 2.9 28.7 + - - +
----------------------------------------------------------
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Residues in contact with TYR 125 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A ASP* 2.8 32.8 + - + +
124A SER* 1.3 80.4 - - - +
126A THR* 1.3 55.9 + - - +
128A ALA* 3.8 7.6 - - + -
129A GLN* 3.1 27.2 + - - +
198A VAL* 6.0 0.7 - - - +
380A TYR* 3.8 12.1 - + + +
383A LYS* 3.3 46.6 + - + +
384A GLN* 3.3 40.7 + - + +
387A ALA* 3.6 23.0 - - + +
390A ARG* 4.7 9.0 + - - -
----------------------------------------------------------
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Residues in contact with THR 126 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A VAL* 2.8 28.7 + - - +
123A LEU* 3.5 6.7 - - - -
124A SER 3.1 0.2 - - - -
125A TYR* 1.3 77.4 - - - +
127A GLN* 1.3 59.2 + - - +
129A GLN* 3.9 7.6 + - - +
130A LYS* 3.1 25.5 + - - +
164A VAL* 4.0 10.9 - - + +
167A ASN* 4.4 7.2 - - + +
168A GLU* 3.4 43.7 - - + +
171A ALA* 4.2 4.6 - - + +
384A GLN* 4.0 11.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 127 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123A LEU* 2.9 35.2 + - + +
124A SER* 2.9 17.1 + - - +
126A THR* 1.3 77.8 - - - +
128A ALA* 1.3 59.1 + - - +
130A LYS* 3.4 15.0 + - - +
131A GLU* 3.0 44.7 + - - +
168A GLU* 4.1 16.0 + - + +
172A ARG* 3.8 23.0 - - - +
427A PRO 6.0 0.4 - - - -
428A GLU* 4.9 7.5 + - - -
----------------------------------------------------------
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Residues in contact with ALA 128 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A SER 2.9 14.6 + - - +
125A TYR* 3.9 7.2 - - + +
126A THR 3.3 0.2 - - - -
127A GLN* 1.3 77.2 - - - +
129A GLN* 1.3 57.6 + - - +
131A GLU* 3.2 12.1 + - - +
132A ALA* 2.9 27.9 + - - +
135A ARG* 5.1 0.7 + - - -
380A TYR* 3.7 28.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 129 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125A TYR 3.1 13.5 + - - +
126A THR* 4.0 7.9 + - - +
127A GLN 3.4 0.2 - - - -
128A ALA* 1.3 79.4 - - - +
130A LYS* 1.3 60.5 + - - +
132A ALA* 3.7 0.9 - - - +
133A ILE* 3.2 27.6 + - + +
164A VAL* 4.0 27.0 - - + +
167A ASN* 6.0 0.3 + - - -
376A THR* 4.3 6.4 + - + +
377A THR* 3.7 36.2 + - - +
380A TYR* 3.4 42.7 - - + +
381A ASN* 4.9 4.6 + - - +
384A GLN* 4.7 7.1 + - - -
----------------------------------------------------------
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Residues in contact with LYS 130 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A THR* 3.1 17.7 + - + +
127A GLN* 3.7 20.2 - - - +
128A ALA 3.1 0.4 - - - -
129A GLN* 1.3 74.1 - - - +
131A GLU* 1.3 71.3 + - - +
132A ALA 3.0 1.5 + - - -
133A ILE* 3.3 4.6 + - - -
134A TYR* 3.1 22.2 + - + +
161A TYR* 3.7 24.9 - - + +
164A VAL* 3.7 15.7 - - + -
165A LEU* 3.4 29.1 - - + +
168A GLU* 3.0 31.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU 131 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A GLN* 3.0 35.9 + - - +
128A ALA* 3.2 9.4 + - - +
130A LYS* 1.3 84.6 - - - +
132A ALA* 1.3 60.3 - - - +
134A TYR* 3.6 8.7 + - - +
135A ARG* 3.4 28.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 132 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ALA 2.9 15.3 + - - +
129A GLN 3.7 5.2 - - - +
130A LYS 3.0 0.2 - - - -
131A GLU* 1.3 74.9 - - - +
133A ILE* 1.3 53.5 + - - +
134A TYR 2.6 15.7 + - - -
135A ARG* 2.8 45.5 + - - +
136A GLN* 3.0 17.0 + - + +
376A THR* 4.7 11.9 - - + +
380A TYR* 4.2 16.4 - - + -
----------------------------------------------------------
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Residues in contact with ILE 133 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129A GLN* 3.2 23.5 + - - +
130A LYS* 3.3 5.3 + - - +
132A ALA* 1.3 76.4 - - - +
134A TYR* 1.3 56.2 + - - +
136A GLN* 4.4 8.0 - - - +
137A LEU* 3.1 23.0 + - - +
157A ALA* 3.8 9.0 - - - +
160A GLN* 3.7 25.1 - - + +
161A TYR* 3.7 34.1 - - + +
164A VAL* 3.6 27.8 - - + -
373A LEU* 4.6 14.8 - - + +
376A THR* 4.0 18.2 - - + -
377A THR* 5.2 2.2 - - - +
----------------------------------------------------------
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Residues in contact with TYR 134 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130A LYS 3.1 14.8 + - - +
131A GLU* 3.6 11.0 - - - +
132A ALA 2.6 6.5 + - - -
133A ILE* 1.3 75.3 - - - +
135A ARG* 1.3 58.0 + - + +
137A LEU* 3.0 19.2 + - + +
138A ASP* 2.7 48.3 + - + +
158A ARG* 5.8 1.8 - - - -
161A TYR* 3.8 30.3 - + + +
----------------------------------------------------------
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Residues in contact with ARG 135 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ALA 5.1 0.4 + - - -
131A GLU* 3.4 10.1 + - - +
132A ALA* 2.8 40.6 + - - +
134A TYR* 1.3 83.3 - - + +
136A GLN* 1.3 60.0 + - + +
137A LEU 3.1 0.2 + - - -
138A ASP* 3.1 7.4 + - - +
139A GLN* 2.9 30.7 + - - +
355A LEU* 6.1 2.8 - - - +
359A GLU* 4.7 14.9 + - - -
380A TYR* 4.9 6.3 + - - -
----------------------------------------------------------
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Residues in contact with GLN 136 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132A ALA* 3.0 15.4 + - + +
133A ILE* 4.4 7.9 - - - +
135A ARG* 1.3 81.3 - - + +
137A LEU* 1.3 60.7 + - - +
139A GLN* 4.1 21.8 + - - +
140A THR* 3.1 31.1 + - - +
157A ALA* 4.8 1.3 - - - -
359A GLU* 3.1 46.9 + - - +
362A TYR* 4.3 6.3 - - - -
369A ILE* 4.2 9.1 - - + +
372A VAL* 3.3 25.2 - - + +
373A LEU* 4.5 15.0 - - + -
376A THR* 5.0 6.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 137 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ILE 3.1 18.6 + - - +
134A TYR* 3.0 26.8 + - + +
136A GLN* 1.3 75.7 - - - +
138A ASP* 1.3 67.8 + - - +
139A GLN 3.0 2.4 + - - -
140A THR* 3.1 19.5 + - - +
141A THR* 3.2 13.7 + - - +
154A VAL* 4.0 8.1 - - + +
157A ALA* 3.5 36.8 - - + +
158A ARG* 3.5 46.2 - - + +
161A TYR* 4.6 11.0 - - + -
----------------------------------------------------------
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Residues in contact with ASP 138 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A TYR* 2.7 33.7 + - + +
135A ARG* 3.6 7.7 - - - +
137A LEU* 1.3 75.1 - - - +
139A GLN* 1.3 60.9 + - - +
141A THR* 3.4 19.5 - - - -
142A GLN* 3.4 29.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 139 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A ARG 2.9 16.4 + - - +
136A GLN* 3.7 21.5 + - - +
138A ASP* 1.3 77.1 + - - +
140A THR* 1.3 64.7 + - - +
141A THR 2.9 5.3 + - - -
142A GLN* 2.9 13.6 + - + +
143A ARG* 2.9 33.8 + - + +
359A GLU 5.0 3.2 + - - -
362A TYR* 3.9 22.7 - - + -
363A SER* 4.6 18.1 - - - +
----------------------------------------------------------
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Residues in contact with THR 140 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A GLN* 3.1 17.2 + - - +
137A LEU* 3.1 13.7 + - - +
139A GLN* 1.3 75.4 - - - +
141A THR* 1.3 57.1 + - - +
143A ARG* 4.3 4.7 - - - -
144A PHE* 2.9 29.9 + - - +
149A VAL* 3.5 2.9 - - - +
153A ASP* 3.5 17.3 + - - +
154A VAL* 3.3 20.8 - - - +
157A ALA* 4.3 3.3 - - + +
362A TYR* 3.4 32.3 - - + +
369A ILE* 3.5 23.6 - - + -
----------------------------------------------------------
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Residues in contact with THR 141 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A LEU* 3.2 16.0 + - - +
138A ASP* 3.4 14.0 - - - -
139A GLN 2.9 0.8 - - - -
140A THR* 1.3 77.2 + - - +
142A GLN* 1.3 60.6 + - + +
144A PHE* 3.0 5.5 + - + +
145A ASN* 2.8 50.0 + - - +
154A VAL* 3.8 22.4 - - + +
----------------------------------------------------------
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Residues in contact with GLN 142 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A ASP* 3.4 30.7 + - - +
139A GLN* 2.9 14.3 + - + +
141A THR* 1.3 76.1 - - + +
143A ARG* 1.3 59.8 + - + +
145A ASN* 2.9 29.4 + - - +
146A VAL* 3.4 16.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 143 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A GLN* 2.9 36.2 + - + +
140A THR* 4.0 3.6 - - - +
142A GLN* 1.3 76.9 - - + +
144A PHE* 1.3 59.4 + - - +
146A VAL 3.6 3.1 + - - -
148A LEU* 3.0 73.0 + - - +
149A VAL* 3.3 23.8 - - + +
362A TYR* 3.1 31.8 + - + -
363A SER* 3.0 27.6 + - - +
364A VAL* 4.5 0.8 - - - +
365A GLY* 3.5 20.2 - - - +
----------------------------------------------------------
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Residues in contact with PHE 144 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140A THR 2.9 21.1 + - - +
141A THR* 3.3 6.7 - - + +
142A GLN 3.0 0.4 - - - -
143A ARG* 1.3 76.2 - - - +
145A ASN* 1.3 69.0 + - - +
146A VAL 3.0 5.8 - - - -
147A GLY* 3.1 17.2 + - - +
149A VAL* 3.1 31.8 - - + +
150A ALA* 3.2 9.6 - - - -
151A ILE* 3.1 48.9 - - + -
154A VAL* 3.6 11.7 - - + -
----------------------------------------------------------
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Residues in contact with ASN 145 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A THR* 2.8 44.8 + - - +
142A GLN* 2.9 14.7 + - - +
144A PHE* 1.3 87.3 - - - +
146A VAL* 1.3 63.6 + - + +
147A GLY 3.5 1.6 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il