Contacts of the helix formed by residues 77 - 145 (chain B) in PDB entry 2WMZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 77 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38B LEU* 5.7 0.4 - - + +
74B SER* 3.0 21.2 + - - +
75B ILE 4.2 0.2 - - - -
76B PHE* 1.3 74.6 - - - +
78B MET* 1.3 67.8 + - - +
79B SER* 3.0 17.2 + - - -
80B LYS* 2.6 51.4 + - + +
81B TRP* 3.4 15.1 - - - +
247B THR* 3.2 27.5 - - + +
249B ASP* 4.7 3.9 - - - +
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Residues in contact with MET 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B PHE* 3.5 30.6 - - + -
77B ASP* 1.3 72.7 + - - +
79B SER* 1.3 64.0 + - - +
81B TRP* 2.9 24.7 + - + +
82B ARG* 2.8 52.4 + - - +
242B ASP* 3.7 10.1 - - + +
245B LEU* 3.2 36.8 - - + -
246B PRO 5.3 0.2 + - - -
247B THR* 4.9 2.0 - - - +
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Residues in contact with SER 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B ASP* 3.0 16.1 + - - -
78B MET* 1.3 77.9 - - - +
80B LYS* 1.3 66.7 + - - +
82B ARG* 3.3 10.5 - - - +
83B ALA* 2.9 26.3 + - - +
239B GLN* 5.5 6.5 + - - -
242B ASP* 3.9 13.8 + - - +
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Residues in contact with LYS 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B ALA 4.2 4.9 - - - +
37B PRO* 3.3 47.6 - - + +
38B LEU* 3.3 24.9 - - + +
74B SER* 3.4 17.6 + - - +
77B ASP* 2.6 43.4 + - + +
79B SER* 1.3 83.6 + - - +
81B TRP* 1.3 62.0 + - - +
83B ALA* 3.7 7.4 - - - +
84B LEU* 3.6 12.6 + - - +
249B ASP* 3.9 11.5 + - - -
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Residues in contact with TRP 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38B LEU* 3.5 40.5 - - + +
75B ILE 5.4 4.9 + - - -
76B PHE* 5.6 2.5 - + - +
77B ASP 3.4 30.0 - - - +
78B MET* 2.9 25.0 + - + +
80B LYS* 1.3 74.0 - - - +
82B ARG* 1.3 68.3 + - - +
83B ALA 3.0 1.3 - - - -
84B LEU* 2.6 29.0 + - + +
85B THR* 2.9 15.9 + - - +
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Residues in contact with ARG 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78B MET* 2.8 34.2 + - - +
79B SER* 3.3 11.9 - - - +
81B TRP* 1.3 77.0 - - - +
83B ALA* 1.3 52.2 + - - +
85B THR* 3.0 7.9 + - - -
86B LEU* 2.8 40.8 + - + +
235B GLU* 3.0 33.4 + - - -
238B ARG* 3.0 35.5 - - - +
239B GLN* 3.2 42.2 - - + +
242B ASP* 2.8 29.0 + - - +
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Residues in contact with ALA 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B ALA* 4.2 10.5 - - + +
79B SER 2.9 17.9 + - - +
80B LYS* 3.7 8.7 - - - +
81B TRP 2.9 0.4 + - - -
82B ARG* 1.3 77.1 - - - +
84B LEU* 1.3 63.1 + - - +
86B LEU* 3.2 10.4 + - - +
87B GLN* 2.9 24.1 + - - +
239B GLN* 4.8 5.4 - - - +
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Residues in contact with LEU 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31B ILE* 3.3 39.9 - - + +
34B ALA* 3.7 14.2 + - + +
35B ARG* 3.4 41.5 - - + +
38B LEU* 4.3 13.2 - - + -
80B LYS 3.6 8.3 + - - +
81B TRP* 2.6 25.2 + - + +
83B ALA* 1.3 77.6 - - - +
85B THR* 1.3 64.5 + - - +
87B GLN* 3.1 6.4 + - - +
88B GLU* 3.0 30.9 + - + +
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Residues in contact with THR 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81B TRP* 2.9 13.3 + - - +
82B ARG* 3.2 9.5 - - - -
84B LEU* 1.3 76.6 - - - +
86B LEU* 1.3 59.0 + - - +
88B GLU* 2.8 36.0 + - - +
89B LYS* 2.9 29.0 + - + +
235B GLU* 3.2 34.5 + - + +
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Residues in contact with LEU 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B ARG* 2.8 29.4 + - + +
83B ALA* 3.7 5.4 - - - +
85B THR* 1.3 73.9 - - - +
87B GLN* 1.3 58.0 + - - +
89B LYS* 3.3 5.0 + - - +
90B ALA* 2.9 28.9 + - - +
232B LEU* 3.4 26.1 - - + +
235B GLU* 3.2 32.8 - - + -
236B GLN* 4.0 15.0 - - + +
239B GLN* 3.1 42.8 - - + +
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Residues in contact with GLN 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B ALA* 3.1 14.7 - - - +
30B LYS* 3.1 47.5 - - + +
31B ILE* 3.4 32.1 - - - +
34B ALA* 3.3 23.8 - - + +
83B ALA 2.9 9.0 + - - +
84B LEU 3.1 2.9 + - - +
86B LEU* 1.3 76.5 - - - +
88B GLU* 1.3 61.2 + - - +
90B ALA* 3.5 10.9 - - - +
91B ALA 3.1 16.3 + - - -
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Residues in contact with GLU 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28B PHE* 5.6 0.5 - - - -
31B ILE* 3.5 34.7 - - + +
84B LEU* 3.0 28.7 - - - +
85B THR* 2.8 26.9 + - - +
87B GLN* 1.3 74.7 - - - +
89B LYS* 1.3 68.0 + - + +
90B ALA 3.1 1.3 - - - -
91B ALA* 3.1 4.7 + - - +
92B GLY* 3.0 18.4 + - - -
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Residues in contact with LYS 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B THR* 2.9 26.2 + - + +
86B LEU 3.3 2.4 + - - +
88B GLU* 1.3 76.5 - - + +
90B ALA* 1.3 57.4 + - - +
92B GLY* 3.2 3.4 + - - +
93B ILE* 3.0 34.6 + - + +
228B LEU* 5.2 1.4 - - - +
231B ASP* 2.9 35.7 + - - +
232B LEU* 3.8 22.4 - - + -
235B GLU* 3.5 42.8 - - + -
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Residues in contact with ALA 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B ALA* 5.2 1.8 - - + -
86B LEU 2.9 17.8 + - - +
87B GLN* 3.5 20.0 - - - +
89B LYS* 1.3 75.1 - - - +
91B ALA* 1.3 60.3 + - - +
93B ILE* 3.2 10.4 + - - +
94B GLN* 2.9 28.6 + - - +
232B LEU* 4.8 8.0 - - + +
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Residues in contact with ALA 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27B ALA* 3.6 29.1 + - - +
28B PHE* 3.0 46.3 - - + -
31B ILE* 3.8 7.0 - - + -
87B GLN 3.1 6.9 + - - +
88B GLU 3.1 8.8 + - - +
90B ALA* 1.3 78.4 - - - +
92B GLY* 1.3 63.6 + - - +
94B GLN* 3.2 2.4 + - - +
95B ASP 2.9 18.0 + - - -
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Residues in contact with GLY 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28B PHE* 4.1 5.8 - - - -
88B GLU 3.0 12.8 + - - -
89B LYS* 3.2 5.4 + - - -
90B ALA 3.1 0.4 - - - -
91B ALA* 1.3 78.4 - - - +
93B ILE* 1.3 56.4 + - - +
95B ASP* 2.9 23.2 + - - +
96B VAL* 3.1 15.4 + - - +
228B LEU* 3.9 9.6 - - - -
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Residues in contact with ILE 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B LYS* 3.0 14.1 + - + +
90B ALA* 3.2 8.9 + - - +
92B GLY* 1.3 73.9 - - - +
94B GLN* 1.3 64.0 + - - +
95B ASP 3.2 0.3 + - - -
96B VAL* 3.2 4.9 + - - +
97B THR* 3.0 22.8 + - - +
225B GLN* 3.8 20.8 + - + +
228B LEU* 3.5 28.9 - - + +
229B SER* 3.4 41.1 - - - +
232B LEU* 4.1 21.5 - - + -
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Residues in contact with GLN 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B SER* 4.1 6.7 + - - -
23B ASP* 3.6 27.5 + - - +
24B ARG* 3.4 28.2 - - - +
27B ALA* 3.5 18.1 - - + +
90B ALA 2.9 13.8 + - - +
91B ALA 3.2 9.4 + - - +
93B ILE* 1.3 77.7 - - - +
95B ASP* 1.3 57.9 + - - +
97B THR* 3.2 24.4 + - - +
98B TYR* 3.0 24.6 + - - +
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Residues in contact with ASP 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24B ARG* 3.0 33.0 + - - -
28B PHE* 4.1 13.2 - - + -
91B ALA 2.9 11.3 + - - +
92B GLY* 2.9 12.4 + - - +
94B GLN* 1.3 72.9 - - - +
96B VAL* 1.3 67.6 + - + +
97B THR 2.9 1.3 - - - -
98B TYR* 2.9 17.0 + - - +
99B GLN* 3.0 30.2 + - - +
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Residues in contact with VAL 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92B GLY 3.1 3.2 + - - +
93B ILE 3.6 2.2 - - - +
95B ASP* 1.3 76.3 - - + +
97B THR* 1.3 61.4 + - - +
99B GLN* 3.4 16.1 + - - +
100B THR* 3.0 25.3 + - - -
221B LEU* 3.4 24.4 - - + +
224B LEU* 3.5 31.6 - - + -
225B GLN* 3.1 30.5 - - + +
228B LEU* 3.5 28.3 - - + -
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Residues in contact with THR 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93B ILE* 3.0 12.4 + - - +
94B GLN* 3.2 30.2 + - - +
95B ASP 2.9 0.6 - - - -
96B VAL* 1.3 75.3 - - - +
98B TYR* 1.3 69.2 + - - +
100B THR* 2.9 9.2 + - - -
101B ASP* 2.8 38.4 + - - +
225B GLN* 2.9 25.9 + - - +
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Residues in contact with TYR 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17B LEU* 3.4 40.1 - - + +
20B SER* 3.0 29.8 - - - +
21B ALA* 3.4 25.8 - - + +
24B ARG* 3.5 41.3 + - + -
94B GLN* 3.0 8.9 + - - +
95B ASP* 2.9 14.2 + - - +
97B THR* 1.3 75.4 - - - +
99B GLN* 1.3 59.7 + - + +
101B ASP* 3.0 4.5 + - - +
102B GLN* 2.8 66.0 + - + +
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Residues in contact with GLN 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95B ASP* 3.0 30.7 + - - +
96B VAL* 3.5 25.3 - - - +
98B TYR* 1.3 78.3 - - + +
100B THR* 1.3 59.8 + - - +
102B GLN* 2.8 38.4 + - - +
103B GLN* 3.0 15.4 + - - +
221B LEU* 3.5 30.0 - - + +
224B LEU* 5.5 2.7 - - - +
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Residues in contact with THR 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96B VAL 3.0 12.0 + - - -
97B THR* 2.9 12.0 + - - -
99B GLN* 1.3 77.2 - - - +
101B ASP* 1.3 66.5 + - - +
103B GLN* 3.1 8.4 + - + +
104B THR* 3.1 26.9 + - - +
221B LEU* 3.3 31.7 - - + +
222B SER* 5.3 8.0 - - - +
225B GLN* 4.2 7.4 + - - +
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Residues in contact with ASP 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B GLU 6.2 0.2 - - - -
17B LEU* 3.3 15.3 - - + +
20B SER* 2.7 35.3 + - - +
97B THR* 2.8 29.9 + - - +
98B TYR 3.0 8.3 + - - +
100B THR* 1.3 80.7 - - - +
102B GLN* 1.3 61.3 + - - +
104B THR* 3.6 9.6 + - - -
105B LEU* 3.3 15.4 + - - +
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Residues in contact with GLN 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B TYR* 5.1 1.9 + - - -
17B LEU* 3.5 21.5 - - + +
98B TYR* 2.8 50.8 + - + +
99B GLN* 2.8 30.4 + - - +
101B ASP* 1.3 75.6 - - - +
103B GLN* 1.3 66.0 + - + +
105B LEU* 3.2 14.0 + - - +
106B ILE* 3.5 14.5 + - - +
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Residues in contact with GLN 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B GLN 3.0 14.3 + - - +
100B THR* 3.1 9.4 + - + +
102B GLN* 1.3 77.8 - - + +
104B THR* 1.3 63.0 + - - +
106B ILE* 2.9 21.0 + - - +
107B LEU* 3.1 11.8 + - - +
221B LEU* 4.1 17.9 - - + +
402B SER* 3.6 26.0 + - - +
405B GLY* 3.1 24.0 + - - -
406B THR* 3.6 0.6 - - - +
407B LEU* 2.8 61.1 + - + +
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Residues in contact with THR 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100B THR* 3.1 16.0 + - - +
101B ASP* 3.8 14.1 + - - +
102B GLN 3.2 0.2 - - - -
103B GLN* 1.3 80.5 - - - +
105B LEU* 1.3 62.5 + - - +
107B LEU* 4.6 6.7 - - - +
108B ASN* 2.9 47.5 + - - +
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Residues in contact with LEU 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B TYR* 4.4 10.1 - - + +
10B ALA* 4.7 2.2 - - + -
11B ARG* 3.7 32.8 - - + +
14B ASN* 2.9 41.1 - - + +
17B LEU* 3.6 28.9 - - + -
101B ASP 3.3 9.0 + - - +
102B GLN 3.2 11.9 + - - +
104B THR* 1.3 79.1 - - - +
106B ILE* 1.3 57.4 + - - +
108B ASN* 4.7 3.6 - - + -
109B THR* 2.8 47.9 + - - +
185B ILE* 4.2 4.3 - - + -
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Residues in contact with ILE 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7B TYR* 3.5 34.5 - - + +
102B GLN 3.9 10.1 - - - +
103B GLN* 2.9 9.9 + - - +
105B LEU* 1.3 74.6 - - - +
107B LEU* 1.3 69.5 + - - +
109B THR* 3.0 2.9 + - - -
110B ALA* 2.8 24.1 + - - +
398B LEU* 5.0 2.9 - - + -
407B LEU* 3.6 30.7 - - + +
408B ASN* 3.4 38.8 - - - +
409B GLU* 3.7 5.4 - - - +
412B LEU* 4.1 21.6 - - + +
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Residues in contact with LEU 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B GLN 3.1 11.1 + - - +
104B THR* 4.1 6.3 - - - +
106B ILE* 1.3 80.8 - - - +
108B ASN* 1.3 67.1 + - - +
110B ALA* 3.9 4.5 - - - +
111B THR* 2.9 48.3 + - - +
395B ILE* 4.5 8.1 - - + -
398B LEU* 4.5 12.6 - - + +
399B ASN* 3.8 25.1 - - - +
402B SER* 4.1 27.4 - - - +
407B LEU* 4.1 9.0 - - + -
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Residues in contact with ASN 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104B THR* 2.9 41.5 + - - +
105B LEU* 4.2 4.5 - - + +
107B LEU* 1.3 86.5 - - - +
109B THR* 1.3 59.7 + - - +
111B THR* 3.9 6.1 - - - +
112B ALA* 2.9 29.6 + - - +
185B ILE* 3.5 18.2 - - + +
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Residues in contact with THR 109 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B LEU* 4.5 9.0 - - + -
6B VAL* 4.6 4.5 - - + -
7B TYR* 3.9 37.8 - - + +
10B ALA* 4.3 4.9 - - + +
105B LEU* 2.8 29.7 + - - +
106B ILE 3.0 4.2 + - - -
108B ASN* 1.3 72.8 - - - +
110B ALA* 1.3 68.2 + - - +
112B ALA* 3.2 3.8 + - - +
113B TYR* 2.9 22.6 + - + +
182B LEU* 4.3 0.7 - - - +
185B ILE* 3.4 23.9 - - - +
186B THR* 4.5 14.1 - - + -
412B LEU* 5.5 0.4 - - + -
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Residues in contact with ALA 110 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B LEU* 3.8 18.4 - - + -
106B ILE 2.8 14.3 + - - +
107B LEU 3.9 0.9 - - - +
109B THR* 1.3 76.9 - - - +
111B THR* 1.3 56.5 - - - +
113B TYR* 3.1 4.5 + - - +
114B PHE* 2.9 39.0 + - + -
395B ILE* 4.5 0.4 - - + -
398B LEU* 3.4 33.2 - - + -
412B LEU* 4.0 15.0 - - + +
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Residues in contact with THR 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107B LEU* 2.9 39.1 + - - +
108B ASN* 3.9 7.2 - - - +
110B ALA* 1.3 77.0 - - - +
112B ALA* 1.3 63.3 + - - +
114B PHE* 3.2 2.9 + - - +
115B ASN* 2.8 44.1 + - - +
395B ILE* 3.7 27.5 - - + +
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Residues in contact with ALA 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B ASN 2.9 20.7 + - - +
109B THR 3.6 2.2 - - - +
111B THR* 1.3 76.6 - - - +
113B TYR* 1.3 59.5 + - - +
115B ASN* 3.4 19.0 + - - +
116B VAL* 3.4 19.1 + - - +
178B ALA 4.4 2.8 - - - +
181B GLN* 4.9 6.0 - - + +
182B LEU* 3.5 25.8 - - + +
185B ILE* 3.5 21.5 - - + -
----------------------------------------------------------
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Residues in contact with TYR 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B ASN 3.6 5.2 - - - -
3B LEU* 3.4 44.1 + - + -
6B VAL* 4.1 14.1 - - + -
109B THR* 2.9 17.2 + - + +
110B ALA 3.3 4.3 - - - +
112B ALA* 1.3 73.3 - - - +
114B PHE* 1.3 82.6 + + - +
115B ASN 3.0 5.5 + - - -
116B VAL* 3.2 13.0 + - - +
117B LEU* 3.3 22.0 + - + +
182B LEU* 3.6 11.8 - - + +
193B LEU* 3.8 30.9 - - + +
194B ALA* 2.8 34.1 + - - -
419B LEU* 3.3 23.3 - - + +
----------------------------------------------------------
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Residues in contact with PHE 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B LEU* 4.3 20.2 - - + -
110B ALA* 2.9 24.2 + - + +
111B THR 3.7 3.6 - - - +
113B TYR* 1.3 89.6 - + - +
115B ASN* 1.3 60.5 + - - +
117B LEU* 3.7 15.1 - - + +
118B ASN* 3.1 26.5 + - - +
391B TYR* 3.8 27.6 - + + +
394B LEU* 3.7 35.9 - - + -
395B ILE* 3.8 24.9 - - + -
415B LEU* 4.2 20.0 - - + -
419B LEU* 3.6 30.1 - - + -
----------------------------------------------------------
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Residues in contact with ASN 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B THR* 2.8 39.7 + - - +
112B ALA* 3.5 12.6 - - - +
113B TYR 3.0 0.6 - - - -
114B PHE* 1.3 77.3 - - - +
116B VAL* 1.3 62.2 + - - +
117B LEU 3.1 1.8 - - - -
118B ASN* 4.1 5.0 + - - +
119B ALA* 2.8 31.8 + - - +
178B ALA* 4.1 12.4 - - + +
181B GLN* 6.3 3.5 - - + +
----------------------------------------------------------
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Residues in contact with VAL 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112B ALA 3.4 9.4 + - - +
113B TYR 3.2 3.4 + - - +
115B ASN* 1.3 79.5 - - - +
117B LEU* 1.3 59.0 + - - +
119B ALA* 4.1 4.7 - - - -
120B ILE* 3.1 26.4 + - + +
175B LEU* 3.6 6.9 - - + +
178B ALA* 3.1 34.3 - - - +
179B VAL* 3.9 24.9 - - + +
182B LEU* 4.2 11.7 - - + -
193B LEU* 3.4 30.3 - - + -
425B THR* 4.0 12.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113B TYR* 3.3 19.6 + - + +
114B PHE* 3.8 27.4 - - + +
115B ASN 3.1 0.2 - - - -
116B VAL* 1.3 76.2 - - - +
118B ASN* 1.3 61.5 + - - +
119B ALA 3.1 1.1 - - - -
120B ILE* 2.9 25.4 + - + +
121B ASP* 3.1 15.1 + - - +
193B LEU* 4.4 11.9 - - + -
194B ALA 3.6 20.4 - - - +
195B ALA* 3.7 26.9 - - + +
196B LEU 3.8 8.5 - - - +
391B TYR* 3.3 21.3 - - + +
423B VAL* 4.0 20.6 - - + -
----------------------------------------------------------
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Residues in contact with ASN 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B PHE 3.1 17.0 + - - +
115B ASN* 4.1 7.3 + - - +
117B LEU* 1.3 78.8 - - - +
119B ALA* 1.3 62.1 + - - +
121B ASP* 3.3 4.4 + - - +
122B VAL* 3.0 34.1 + - - +
384B GLN 5.0 0.3 - - - +
387B ALA* 4.1 4.7 - - - +
388B ASN* 3.0 41.9 + - - +
391B TYR* 3.3 32.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115B ASN 2.8 21.0 + - - +
116B VAL 3.6 6.7 - - - +
117B LEU 3.1 0.2 - - - -
118B ASN* 1.3 79.1 - - - +
120B ILE* 1.3 60.4 + - - +
122B VAL* 3.5 7.1 + - - +
123B LEU* 3.2 20.8 + - - +
171B ALA 4.2 6.6 - - - +
174B ASN* 4.3 4.9 - - + +
175B LEU* 3.6 32.1 - - + +
178B ALA* 4.0 9.4 - - + -
----------------------------------------------------------
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Residues in contact with ILE 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116B VAL* 3.1 19.5 - - + +
117B LEU* 2.9 15.1 + - + +
119B ALA* 1.3 74.9 - - - +
121B ASP* 1.3 73.3 + - - +
123B LEU* 3.1 7.7 + - - +
124B SER* 2.9 29.8 + - - +
175B LEU* 3.3 20.9 - - + -
423B VAL* 3.4 31.0 - - + -
424B SER 3.1 29.8 - - - +
425B THR* 4.3 6.7 - - + -
----------------------------------------------------------
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Residues in contact with ASP 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B LEU 3.1 12.4 + - - +
118B ASN* 3.3 9.6 + - - +
120B ILE* 1.3 82.5 - - - +
122B VAL* 1.3 64.5 + - + +
124B SER* 3.0 7.0 + - - -
125B TYR* 2.8 41.7 + - + +
384B GLN* 6.3 0.2 - - - -
387B ALA* 3.4 26.2 - - + +
391B TYR* 3.4 29.1 + - - -
----------------------------------------------------------
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Residues in contact with VAL 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ASN* 3.0 29.6 + - - +
119B ALA* 3.8 6.7 - - - +
121B ASP* 1.3 78.2 - - - +
123B LEU* 1.3 63.1 + - - +
125B TYR* 3.8 1.4 - - - +
126B THR* 2.8 33.1 + - - +
171B ALA* 3.6 24.9 - - + +
174B ASN* 6.5 0.4 - - + -
384B GLN* 3.3 32.7 + - + +
388B ASN* 5.6 2.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B ALA 3.2 10.8 + - - +
120B ILE* 3.1 10.4 + - - +
122B VAL* 1.3 79.7 - - - +
124B SER* 1.3 63.1 + - - +
126B THR* 3.0 4.3 + - - -
127B GLN* 2.9 39.6 + - + +
168B GLU* 3.9 21.3 - - + +
171B ALA* 4.0 10.8 - - + +
172B ARG* 3.8 38.8 - - + +
175B LEU* 4.2 13.2 - - + -
427B PRO* 3.7 32.3 - - + -
----------------------------------------------------------
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Residues in contact with SER 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B ILE* 2.9 22.2 + - - +
121B ASP* 3.6 9.2 - - - -
123B LEU* 1.3 75.7 - - - +
125B TYR* 1.3 66.0 + - - +
127B GLN* 3.0 14.9 + - - +
128B ALA* 2.9 28.4 + - - +
----------------------------------------------------------
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Residues in contact with TYR 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B ASP* 2.8 33.1 + - + +
122B VAL 4.0 0.2 - - - +
124B SER* 1.3 82.4 - - - +
126B THR* 1.3 57.3 + - - +
128B ALA* 4.3 5.4 - - + -
129B GLN* 3.1 28.2 + - - +
380B TYR* 3.6 14.7 - + + +
383B LYS* 3.0 52.9 + - + +
384B GLN* 3.2 41.7 - - + +
386B LEU* 6.1 0.3 - - - +
387B ALA* 3.8 18.4 - - + +
390B ARG* 4.8 8.5 + - - -
----------------------------------------------------------
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Residues in contact with THR 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B VAL* 2.8 30.6 + - - +
123B LEU* 3.0 7.2 + - - -
125B TYR* 1.3 77.0 - - - +
127B GLN* 1.3 59.9 + - - +
129B GLN* 3.9 8.2 + - - +
130B LYS* 3.0 25.6 + - - +
164B VAL* 3.9 11.3 - - + +
167B ASN* 4.4 6.8 - - + +
168B GLU* 3.3 43.3 - - + +
171B ALA* 4.2 3.8 - - + +
384B GLN* 4.0 9.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B LEU* 2.9 29.4 + - + +
124B SER* 3.0 16.3 + - - +
126B THR* 1.3 76.9 - - - +
128B ALA* 1.3 61.0 + - - +
130B LYS* 3.7 13.2 - - - +
131B GLU* 3.0 44.1 + - - +
168B GLU* 3.8 21.9 + - + +
172B ARG* 3.6 25.9 - - - +
428B GLU* 5.2 4.8 + - - -
----------------------------------------------------------
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Residues in contact with ALA 128 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B SER 2.9 14.6 + - - +
125B TYR* 3.8 4.7 - - + +
127B GLN* 1.3 78.4 - - - +
129B GLN* 1.3 57.5 + - - +
131B GLU* 3.3 11.8 + - - +
132B ALA* 3.0 27.7 + - - +
135B ARG* 5.1 0.7 + - - -
380B TYR* 3.4 33.7 + - + +
----------------------------------------------------------
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Residues in contact with GLN 129 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B TYR 3.1 16.9 + - - +
126B THR* 4.0 7.9 + - - +
128B ALA* 1.3 72.6 - - - +
130B LYS* 1.3 65.5 + - - +
132B ALA* 3.4 2.1 + - - +
133B ILE* 3.0 27.2 + - + +
164B VAL* 3.8 29.4 - - + +
167B ASN* 5.8 1.4 + - - -
376B THR* 4.3 6.3 - - + +
377B THR* 3.4 37.8 + - - +
380B TYR* 3.4 39.1 - - + +
381B ASN* 5.0 4.8 + - - +
384B GLN* 4.9 5.4 + - - -
----------------------------------------------------------
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Residues in contact with LYS 130 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B THR* 3.0 18.9 + - + +
127B GLN* 3.7 19.4 - - - +
128B ALA 3.2 0.2 - - - -
129B GLN* 1.3 73.8 - - - +
131B GLU* 1.3 71.9 + - - +
132B ALA 3.0 3.0 + - - -
133B ILE* 3.1 2.9 + - - -
134B TYR* 3.0 20.6 + - - +
161B TYR* 3.5 28.3 - - + +
164B VAL* 3.7 16.8 - - + -
165B LEU* 3.3 29.8 - - + +
168B GLU* 2.9 33.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127B GLN* 3.0 33.9 + - - +
128B ALA* 3.3 9.2 + - - +
130B LYS* 1.3 85.1 - - - +
132B ALA* 1.3 61.8 + - - +
134B TYR* 3.5 9.6 - - - +
135B ARG* 3.3 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 132 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B ALA 3.0 15.6 + - - +
129B GLN* 3.6 8.7 - - - +
130B LYS 3.0 0.6 + - - -
131B GLU* 1.3 73.4 - - - +
133B ILE* 1.3 54.4 - - - +
134B TYR 2.6 16.6 + - - -
135B ARG* 2.8 45.3 + - - +
136B GLN* 3.0 16.4 + - + +
355B LEU* 5.7 2.2 - - + -
359B GLU* 5.4 1.1 - - - +
376B THR* 4.4 13.2 - - + +
380B TYR* 4.3 11.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 133 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B GLN* 3.0 24.4 + - - +
130B LYS* 3.6 4.5 - - - +
132B ALA* 1.3 77.1 - - - +
134B TYR* 1.3 57.1 + - - +
136B GLN* 4.2 7.7 - - - +
137B LEU* 3.2 24.3 + - - +
157B ALA* 3.6 20.9 - - - +
160B GLN* 3.7 35.4 - - + +
161B TYR* 3.6 21.8 - - + +
164B VAL* 3.7 17.0 - - + -
373B LEU* 4.4 16.8 - - + +
376B THR* 4.0 16.6 - - + -
377B THR* 5.1 1.8 - - - +
----------------------------------------------------------
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Residues in contact with TYR 134 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130B LYS 3.0 10.8 + - - +
131B GLU* 3.5 15.7 - - - +
132B ALA 2.6 6.7 + - - -
133B ILE* 1.3 74.9 - - - +
135B ARG* 1.3 64.2 + - + +
137B LEU* 3.0 18.7 + - + +
138B ASP* 2.7 43.6 + - + +
158B ARG* 5.6 3.4 - - - -
161B TYR* 3.7 31.9 - + + +
----------------------------------------------------------
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Residues in contact with ARG 135 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B ALA 5.1 1.0 + - - -
131B GLU* 3.3 10.4 + - - +
132B ALA* 2.8 39.2 + - - +
134B TYR* 1.3 83.2 - - + +
136B GLN* 1.3 66.2 + - + +
138B ASP* 3.1 7.8 + - - +
139B GLN* 2.9 25.4 + - - +
355B LEU* 5.4 4.2 - - - +
359B GLU* 3.8 25.8 + - - +
380B TYR* 5.2 4.2 + - - -
----------------------------------------------------------
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Residues in contact with GLN 136 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B ALA* 3.0 15.4 + - + +
133B ILE* 4.3 2.0 - - - +
135B ARG* 1.3 80.4 - - + +
137B LEU* 1.3 60.9 + - - +
139B GLN* 3.8 11.7 + - - +
140B THR* 3.0 30.8 + - - +
157B ALA* 4.7 0.9 - - - -
359B GLU* 2.9 39.9 + - - +
362B TYR* 3.7 20.6 - - - +
369B ILE* 3.8 4.1 - - + +
372B VAL* 2.9 38.5 - - + +
373B LEU* 4.2 21.1 - - + -
376B THR* 5.0 4.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 137 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133B ILE 3.2 17.3 + - - +
134B TYR* 3.0 28.6 + - + +
136B GLN* 1.3 75.1 - - - +
138B ASP* 1.3 67.6 + - - +
139B GLN 2.8 3.3 + - - -
140B THR* 3.0 21.8 + - - +
141B THR* 3.2 11.3 + - - +
154B VAL* 3.7 8.1 - - + +
157B ALA* 3.4 12.3 - - + -
158B ARG* 3.3 74.0 - - + +
161B TYR* 4.7 7.6 - - + -
----------------------------------------------------------
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Residues in contact with ASP 138 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134B TYR* 2.7 32.4 + - + +
135B ARG* 3.5 7.1 - - - +
137B LEU* 1.3 75.0 - - - +
139B GLN* 1.3 61.2 + - - +
141B THR* 3.4 10.0 - - - -
142B GLN* 3.4 39.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 139 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135B ARG 2.9 16.4 + - - +
136B GLN* 3.8 14.9 + - - +
137B LEU 2.8 1.0 + - - -
138B ASP* 1.3 77.2 + - - +
140B THR* 1.3 63.6 + - - +
141B THR 2.8 5.9 + - - -
142B GLN* 2.9 22.8 + - + +
143B ARG* 3.0 25.0 + - + +
359B GLU 4.4 3.6 + - - -
362B TYR* 3.2 28.9 - - + +
363B SER* 3.9 27.3 - - - +
----------------------------------------------------------
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Residues in contact with THR 140 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B GLN 3.0 15.9 + - - +
137B LEU* 3.0 17.8 + - - -
139B GLN* 1.3 75.8 - - - +
141B THR* 1.3 55.6 + - - +
143B ARG* 4.4 1.6 - - - -
144B PHE* 2.9 30.0 + - - +
149B VAL* 3.4 3.3 - - - +
153B ASP* 3.5 20.1 + - - +
154B VAL* 3.2 21.5 - - - +
157B ALA* 4.3 2.5 - - + +
362B TYR* 3.1 32.5 - - + +
369B ILE* 3.3 23.8 - - + -
----------------------------------------------------------
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Residues in contact with THR 141 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137B LEU* 3.2 14.8 + - - +
138B ASP* 3.4 12.9 - - - -
139B GLN 2.8 1.6 + - - -
140B THR* 1.3 76.9 + - - +
142B GLN* 1.3 54.7 + - + +
144B PHE* 2.9 6.6 + - + +
145B ASN* 2.7 55.1 + - - +
154B VAL* 3.7 25.0 - - + +
----------------------------------------------------------
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Residues in contact with GLN 142 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138B ASP* 3.4 29.4 + - - +
139B GLN* 2.9 14.9 + - + +
141B THR* 1.3 75.4 - - + +
143B ARG* 1.3 65.2 + - + +
145B ASN* 3.0 24.3 + - - +
146B VAL* 3.4 16.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 143 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139B GLN* 3.0 34.4 + - + +
140B THR* 4.0 1.8 - - - +
142B GLN* 1.3 77.0 - - + +
144B PHE* 1.3 58.9 + - - +
146B VAL* 3.6 3.0 + - - +
148B LEU* 2.8 76.7 + - + +
149B VAL* 3.2 26.0 - - + +
362B TYR* 3.5 23.6 + - + -
363B SER* 3.7 21.8 + - - +
364B VAL* 4.3 2.4 - - - +
365B GLY* 3.4 31.5 - - - +
----------------------------------------------------------
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Residues in contact with PHE 144 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140B THR 2.9 19.5 + - - +
141B THR* 2.9 8.1 + - + +
143B ARG* 1.3 76.7 - - - +
145B ASN* 1.3 69.9 + - - +
146B VAL 3.0 6.1 - - - -
147B GLY* 3.1 16.8 + - - +
149B VAL* 3.1 28.0 - - + -
150B ALA* 3.2 10.3 - - - -
151B ILE* 3.1 48.2 - - + -
154B VAL* 3.7 11.4 - - + -
----------------------------------------------------------
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Residues in contact with ASN 145 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141B THR* 2.7 39.0 + - - +
142B GLN* 3.0 14.2 + - - +
144B PHE* 1.3 89.3 - - - +
146B VAL* 1.3 63.3 + - + +
147B GLY 3.4 1.1 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il