Contacts of the helix formed by residues 675 - 704 (chain A) in PDB entry 2WXL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 675 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    154A  ARG*     3.4    15.4    +      -       -      +
    165A  TYR*     4.2     8.6    +      -       -      -
    289A  GLN      5.5     0.9    +      -       -      -
    291A  ASN*     3.6     5.2    -      -       -      -
    638A  LEU*     4.6     5.8    -      -       -      -
    671A  TYR*     3.2    13.9    +      -       -      -
    672A  CYS*     3.1    13.6    +      -       -      +
    673A  ARG      3.4     0.4    -      -       -      -
    674A  GLY*     1.3    80.8    -      -       -      +
    676A  THR*     1.3    57.4    +      -       -      +
    677A  HIS*     3.9     4.0    +      -       -      +
    678A  HIS*     3.2    30.0    +      -       -      +
    679A  MET*     3.2    21.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 676 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    113A  ILE*     4.2    24.1    -      -       +      +
    290A  SER      4.7     2.5    -      -       -      +
    291A  ASN*     3.0    42.0    +      -       -      +
    672A  CYS      4.0     7.2    +      -       -      -
    673A  ARG*     4.6     1.4    +      -       -      -
    675A  SER*     1.3    69.4    -      -       -      +
    677A  HIS*     1.3    67.9    +      -       -      +
    679A  MET*     3.4    19.1    +      -       +      +
    680A  LYS*     3.3    39.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 677 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    288A  GLU*     4.3    16.4    +      -       +      +
    289A  GLN*     3.5    72.1    +      -       +      +
    290A  SER      5.0     2.3    +      -       -      +
    291A  ASN*     4.6     1.0    +      -       -      -
    641A  ARG*     6.2     2.0    -      -       -      -
    675A  SER*     3.4     4.4    +      -       -      +
    676A  THR*     1.3    79.9    -      -       -      +
    678A  HIS*     1.3    59.8    +      -       -      +
    680A  LYS*     2.9    30.9    +      -       +      +
    681A  VAL*     3.1    33.3    +      -       +      +
    732A  GLN*     6.0     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 678 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    165A  TYR*     5.2     1.1    -      -       -      +
    641A  ARG*     3.7    46.6    +      -       +      +
    645A  HIS*     3.6    33.1    +      -       -      +
    671A  TYR*     2.6    30.8    +      -       +      +
    675A  SER*     3.2    23.1    +      -       -      +
    677A  HIS*     1.3    81.9    +      -       -      +
    679A  MET*     1.3    57.2    +      -       -      +
    681A  VAL*     3.9    16.6    -      -       +      +
    682A  LEU*     2.8    57.4    +      -       +      +
    732A  GLN*     4.7     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 679 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    113A  ILE*     4.2     9.9    -      -       +      -
    116A  GLN*     3.3    36.3    -      -       +      +
    117A  ILE*     3.5    31.9    -      -       +      -
    120A  LEU*     3.7    22.3    -      -       +      +
    671A  TYR*     5.6     1.0    -      -       -      -
    672A  CYS*     4.0    16.2    -      -       +      +
    675A  SER      3.2    13.8    +      -       -      +
    676A  THR*     3.4    30.1    -      -       +      +
    678A  HIS*     1.3    75.9    -      -       -      +
    680A  LYS*     1.3    67.3    +      -       +      +
    682A  LEU*     3.3     5.6    +      -       -      +
    683A  MET*     2.8    42.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 680 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    112A  LEU*     5.6     2.6    -      -       -      +
    113A  ILE*     5.7     0.8    -      -       -      +
    116A  GLN*     2.9    41.4    +      -       -      +
    676A  THR*     3.3    31.5    +      -       -      +
    677A  HIS*     2.9    15.8    +      -       +      +
    679A  MET*     1.3    80.0    -      -       +      +
    681A  VAL*     1.3    64.4    +      -       +      +
    683A  MET*     3.4    11.2    +      -       -      +
    684A  LYS*     3.2    21.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 681 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    641A  ARG*     5.5     0.7    -      -       -      +
    677A  HIS*     3.1    38.5    +      -       +      +
    678A  HIS*     3.3    19.5    +      -       +      +
    680A  LYS*     1.3    76.1    -      -       +      +
    682A  LEU*     1.3    62.4    +      -       -      +
    684A  LYS*     3.4    10.1    -      -       -      +
    685A  GLN*     3.3    30.2    +      -       -      +
    732A  GLN*     3.6    43.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 682 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    120A  LEU*     3.5    22.2    -      -       +      +
    645A  HIS*     4.1     7.9    -      -       -      +
    648A  PHE*     3.6    38.1    -      -       +      -
    649A  TRP*     3.8    28.7    -      -       +      +
    671A  TYR*     4.2    10.5    -      -       +      -
    672A  CYS*     5.9     0.2    -      -       -      -
    678A  HIS*     2.8    52.4    +      -       +      +
    679A  MET*     3.7     4.7    -      -       -      +
    681A  VAL*     1.3    74.3    -      -       -      +
    683A  MET*     1.3    58.9    +      -       -      +
    685A  GLN*     3.1    17.1    +      -       -      +
    686A  GLY      2.9    23.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 683 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    116A  GLN*     3.4    50.0    -      -       +      +
    119A  LEU*     3.7    29.4    -      -       +      -
    120A  LEU*     3.5    26.9    -      -       +      +
    679A  MET*     2.8    34.6    +      -       -      +
    680A  LYS*     3.6    13.0    -      -       -      +
    681A  VAL      3.4     0.2    -      -       -      -
    682A  LEU*     1.3    72.2    -      -       -      +
    684A  LYS*     1.3    58.6    +      -       -      +
    686A  GLY*     3.2     2.9    +      -       -      +
    687A  GLU*     2.9    46.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 684 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    680A  LYS      3.2    10.3    +      -       -      +
    681A  VAL*     3.4    12.8    -      -       -      +
    683A  MET*     1.3    80.6    -      -       -      +
    685A  GLN*     1.3    61.1    +      -       -      +
    687A  GLU*     3.4    18.7    +      -       +      +
    688A  ALA*     3.1    20.4    +      -       -      +
    726A  GLU*     2.7    37.2    +      -       -      -
    727A  ALA*     3.2    16.5    +      -       -      +
    729A  SER      3.1    19.3    +      -       -      -
    730A  HIS*     3.4    17.0    -      -       -      +
    731A  LEU*     3.8    16.6    -      -       +      -
    732A  GLN      5.6     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 685 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    645A  HIS*     3.4    15.9    +      -       -      -
    649A  TRP*     3.0    34.5    +      -       +      -
    681A  VAL*     3.3    34.3    +      -       -      +
    682A  LEU*     3.1    18.6    +      -       -      +
    684A  LYS*     1.3    77.3    -      -       -      +
    686A  GLY*     1.3    57.9    +      -       -      +
    688A  ALA*     3.2     5.2    +      -       -      +
    689A  LEU*     3.0    32.4    +      -       -      +
    731A  LEU*     4.0    14.7    -      -       +      +
    732A  GLN*     3.2    36.1    -      -       -      +
    734A  PRO*     3.6    12.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 686 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    120A  LEU*     5.6     2.9    -      -       -      -
    649A  TRP*     4.4     8.3    -      -       -      -
    682A  LEU      2.9    13.5    +      -       -      -
    683A  MET*     3.2     5.3    +      -       -      -
    685A  GLN*     1.3    75.5    -      -       -      +
    687A  GLU*     1.3    56.6    +      -       -      +
    689A  LEU*     3.3    11.1    +      -       -      +
    690A  SER*     2.9    29.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 687 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    119A  LEU*     4.9    10.9    -      -       +      +
    683A  MET*     2.9    40.4    +      -       +      +
    684A  LYS*     3.7    24.5    +      -       +      +
    685A  GLN      3.3     0.2    -      -       -      -
    686A  GLY*     1.3    73.2    -      -       -      +
    688A  ALA*     1.3    64.3    +      -       -      +
    690A  SER*     3.4     7.1    +      -       -      -
    691A  LYS*     3.1    28.8    +      -       -      +
    727A  ALA*     4.6    12.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 688 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    684A  LYS      3.1     8.0    +      -       -      +
    685A  GLN      3.4     8.5    -      -       -      +
    687A  GLU*     1.3    75.6    -      -       -      +
    689A  LEU*     1.3    58.9    +      -       +      +
    691A  LYS*     3.3     4.9    +      -       -      +
    692A  LEU*     3.0    37.6    +      -       +      +
    727A  ALA      3.5    22.8    +      -       -      +
    728A  LEU*     3.6    11.3    -      -       +      +
    731A  LEU*     3.7    28.5    -      -       +      -
    763A  TYR*     5.7     1.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 689 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    649A  TRP*     3.4    34.5    -      -       +      -
    685A  GLN      3.0    18.5    +      -       -      +
    686A  GLY*     3.7     5.8    -      -       -      +
    688A  ALA*     1.3    75.0    -      -       +      +
    690A  SER*     1.3    64.4    +      -       -      +
    692A  LEU*     3.9     8.4    -      -       +      +
    693A  LYS*     3.1    23.2    +      -       -      +
    734A  PRO*     4.4     7.4    -      -       +      -
    778A  PHE*     3.9    21.0    -      -       +      -
    818A  THR*     3.9    25.1    -      -       +      +
    822A  THR*     6.0     0.9    -      -       +      -
    824A  LEU*     3.8    36.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 690 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    686A  GLY      2.9    16.6    +      -       -      -
    687A  GLU*     3.6     9.2    -      -       -      -
    688A  ALA      3.3     0.2    -      -       -      -
    689A  LEU*     1.3    76.6    -      -       -      +
    691A  LYS*     1.3    68.5    +      -       -      +
    693A  LYS*     3.4     6.8    +      -       -      +
    694A  ALA*     3.2    22.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 691 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    687A  GLU*     3.1     8.2    +      -       -      +
    688A  ALA      3.6     7.9    -      -       -      +
    690A  SER*     1.3    83.1    +      -       -      +
    692A  LEU*     1.3    56.0    +      -       -      +
    694A  ALA*     3.2     5.7    +      -       +      +
    695A  LEU*     2.9    29.3    +      -       -      +
    723A  THR*     4.0    30.3    -      -       -      -
    724A  TYR*     3.5    41.7    -      -       +      +
    727A  ALA*     3.4    22.5    -      -       +      +
    728A  LEU*     4.0    14.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 692 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    688A  ALA*     3.0    28.9    +      -       +      +
    689A  LEU*     3.9     9.0    -      -       +      +
    690A  SER      3.4     0.2    -      -       -      -
    691A  LYS*     1.3    74.6    -      -       -      +
    693A  LYS*     1.3    52.3    +      -       -      +
    695A  LEU*     3.3     7.0    +      -       +      +
    696A  ASN*     2.7    37.4    +      -       -      +
    728A  LEU*     3.8    23.3    -      -       +      -
    759A  LEU*     3.7    10.8    -      -       +      +
    761A  ILE*     3.8    33.7    -      -       +      -
    763A  TYR*     5.6     1.8    -      -       -      +
    776A  ILE*     4.3    22.4    -      -       +      -
    778A  PHE*     3.6    37.9    -      -       +      -
    824A  LEU*     4.6     0.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 693 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    689A  LEU      3.1    13.4    +      -       -      +
    690A  SER*     3.5    11.2    -      -       -      +
    691A  LYS      3.3     0.2    -      -       -      -
    692A  LEU*     1.3    73.6    -      -       -      +
    694A  ALA*     1.3    60.9    -      -       -      +
    696A  ASN*     3.2     1.1    +      -       +      -
    697A  ASP*     2.8    56.0    +      -       -      +
    778A  PHE*     3.5    12.7    -      -       +      -
    780A  ASN*     3.1    43.5    -      -       +      +
    822A  THR*     5.5     1.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 694 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    690A  SER      3.2     9.8    +      -       -      +
    691A  LYS*     3.7     7.0    -      -       +      +
    693A  LYS*     1.3    81.0    -      -       -      +
    695A  LEU*     1.3    62.1    +      -       -      +
    697A  ASP*     3.4     9.0    +      -       -      +
    698A  PHE*     3.1    21.5    +      -       -      +
    724A  TYR*     3.4    19.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 695 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    691A  LYS      2.9    16.4    +      -       -      +
    692A  LEU*     3.6    13.7    -      -       +      +
    693A  LYS      3.2     0.2    -      -       -      -
    694A  ALA*     1.3    73.6    -      -       -      +
    696A  ASN*     1.3    59.6    +      -       -      +
    698A  PHE*     3.1    10.5    +      -       +      +
    699A  VAL*     3.0    30.9    +      -       +      +
    715A  MET*     3.9    32.8    -      -       +      +
    718A  CYS*     3.6    36.8    -      -       +      -
    719A  MET*     3.7    29.4    -      -       +      -
    724A  TYR*     3.9    11.1    +      -       +      -
    728A  LEU*     4.9     2.0    -      -       +      -
    759A  LEU*     3.8    18.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 696 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    692A  LEU      2.7    21.2    +      -       -      +
    693A  LYS*     3.8     3.8    -      -       -      +
    695A  LEU*     1.3    72.3    -      -       -      +
    697A  ASP*     1.3    58.3    +      -       -      +
    699A  VAL*     3.3     1.2    +      -       -      +
    700A  LYS*     2.9    38.7    +      -       -      +
    756A  MET      3.5    10.9    +      -       -      +
    757A  LYS*     3.0    22.8    +      -       -      +
    758A  PRO*     4.3     0.4    -      -       -      +
    759A  LEU*     3.6    21.2    -      -       +      +
    778A  PHE*     3.3    41.5    +      -       +      -
    780A  ASN*     4.1    13.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 697 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    693A  LYS*     2.8    61.5    +      -       -      +
    694A  ALA*     3.7     8.4    -      -       -      +
    696A  ASN*     1.3    72.7    -      -       -      +
    698A  PHE*     1.3    61.6    +      -       -      +
    700A  LYS*     3.5    13.9    +      -       -      +
    701A  VAL*     3.1    28.5    +      -       +      +
    780A  ASN*     4.1     6.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 698 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    694A  ALA      3.1    13.7    +      -       -      +
    695A  LEU*     3.1    15.0    +      -       +      +
    697A  ASP*     1.3    77.7    -      -       -      +
    699A  VAL*     1.3    63.7    +      -       +      +
    701A  VAL*     3.2     9.3    +      -       +      +
    702A  SER*     2.8    56.0    +      -       -      -
    711A  THR*     4.3     4.5    -      -       +      -
    714A  MET*     3.4    38.4    -      -       +      -
    715A  MET*     4.0    14.8    -      -       -      -
    718A  CYS*     5.3     9.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 699 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    695A  LEU*     3.0    15.5    +      -       +      +
    696A  ASN      3.3     7.2    +      -       -      +
    698A  PHE*     1.3    79.3    -      -       +      +
    700A  LYS*     1.3    61.8    +      -       -      +
    702A  SER*     3.8     0.3    -      -       -      -
    703A  SER*     2.9    31.4    +      -       -      -
    711A  THR*     4.1    11.1    -      -       +      +
    715A  MET*     4.1    30.3    -      -       +      -
    751A  PHE*     3.6    38.8    -      -       +      -
    757A  LYS*     3.9    14.6    -      -       +      +
    759A  LEU*     3.9    20.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 700 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    696A  ASN*     2.9    28.0    +      -       -      +
    697A  ASP*     3.6    15.1    +      -       -      +
    699A  VAL*     1.3    74.6    -      -       -      +
    701A  VAL*     1.3    63.8    +      -       +      +
    703A  SER*     3.0    21.2    +      -       -      -
    704A  GLN*     3.2    20.4    -      -       -      +
    755A  LYS      5.2     2.2    -      -       -      +
    756A  MET*     3.0    39.3    -      -       -      +
    757A  LYS*     4.3    10.5    -      -       +      -
    780A  ASN*     2.7    46.9    +      -       -      +
    781A  GLY*     4.5     1.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 701 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    697A  ASP*     3.1    15.9    +      -       +      +
    698A  PHE*     3.2    12.3    +      -       +      +
    700A  LYS*     1.3    76.7    -      -       +      +
    702A  SER*     1.3    64.4    +      -       -      +
    704A  GLN*     3.2    21.2    +      -       -      +
    705A  LYS*     3.6    39.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 702 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    698A  PHE*     2.8    44.5    +      -       -      -
    701A  VAL*     1.3    75.2    -      -       -      +
    703A  SER*     1.3    58.8    +      -       -      +
    705A  LYS*     2.9    23.5    +      -       -      +
    706A  THR*     3.1    22.6    +      -       -      +
    711A  THR*     2.8    37.2    +      -       -      +
    714A  MET*     5.0     1.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 703 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    699A  VAL      2.9    15.3    +      -       -      -
    700A  LYS      3.0    16.3    +      -       -      -
    702A  SER*     1.3    77.9    -      -       -      +
    704A  GLN*     1.3    60.6    +      -       -      +
    705A  LYS      3.3     0.9    +      -       -      -
    706A  THR      3.8    11.5    -      -       -      +
    711A  THR*     3.7     8.4    +      -       -      -
    751A  PHE*     4.4    14.6    -      -       -      -
    757A  LYS*     3.5    36.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 704 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    700A  LYS*     3.2    23.1    -      -       -      +
    701A  VAL*     3.2    11.2    +      -       -      +
    702A  SER      3.2     1.2    -      -       -      -
    703A  SER*     1.3    78.1    -      -       -      +
    705A  LYS*     1.3    66.7    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il