Contacts of the helix formed by residues 82 - 111 (chain 5) in PDB entry 2X17


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 82 (chain 5).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     305  TYR*     3.3     8.4    +      -       -      -
     805  TRP*     3.3     1.4    -      -       -      +
     815  GLU*     1.3    79.8    -      -       -      +
     835  PRO*     1.4    69.8    -      -       -      +
     845  LEU*     3.6    12.6    +      -       -      +
     855  LYS*     3.2    27.2    +      -       -      +
     865  ALA*     3.0    27.9    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with PRO 83 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     305  TYR*     3.8     7.4    -      -       +      +
     315  PHE*     3.8    21.1    -      -       +      -
     345  LEU*     4.2    10.8    -      -       +      -
     365  LEU*     4.2    21.3    -      -       +      -
     395  PHE*     5.3     0.7    -      -       +      -
     825  SER*     1.4    87.2    -      -       -      +
     845  LEU*     1.3    59.9    +      -       -      +
     865  ALA*     3.6     4.5    +      -       +      +
     875  PHE*     3.4    19.4    +      -       -      -
    1415  LEU*     3.4    28.4    -      -       +      +
    1515  LEU*     4.3    19.5    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 84 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     825  SER*     3.1    10.2    +      -       -      +
     835  PRO*     1.3    77.3    -      -       -      +
     855  LYS*     1.3    64.0    +      -       +      +
     875  PHE*     3.3     4.7    +      -       -      +
     885  GLU*     3.0    47.1    +      -       -      +
    1385  LEU*     3.9     9.8    -      -       +      +
    1415  LEU*     3.8    24.8    -      -       +      +
    1425  LYS*     3.7    43.7    -      -       +      +
    1455  LYS*     5.3    13.5    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 85 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     805  TRP*     3.9     7.2    -      -       +      -
     815  GLU*     4.1    32.8    -      -       +      +
     825  SER*     3.2    26.2    +      -       -      +
     845  LEU*     1.3    80.7    -      -       +      +
     865  ALA*     1.3    58.8    +      -       -      +
     885  GLU*     3.4    28.2    +      -       +      +
     895  ALA*     3.1    27.7    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 86 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     275  MET*     3.4    20.5    -      -       +      +
     305  TYR*     4.0    10.5    -      -       +      -
     315  PHE*     4.0    21.3    -      -       +      -
     805  TRP*     3.8    27.1    -      -       +      +
     825  SER      3.0    15.1    +      -       -      +
     835  PRO      3.6     6.5    -      -       -      +
     845  LEU      3.2     0.2    -      -       -      -
     855  LYS*     1.3    77.8    -      -       -      +
     875  PHE*     1.3    58.4    +      -       -      +
     895  ALA*     3.5     0.9    +      -       -      +
     905  ALA      3.2    18.2    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with PHE 87 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     315  PHE*     3.9     9.9    -      +       -      -
     395  PHE*     3.8    28.0    -      +       -      -
     425  TRP*     4.3    13.5    -      +       -      -
     435  MET*     3.7    29.4    -      -       +      -
     835  PRO      3.4     6.5    +      -       -      -
     845  LEU      3.3     4.9    +      -       -      +
     865  ALA*     1.3    76.7    -      -       -      +
     885  GLU*     1.3    59.9    +      -       -      +
     895  ALA      3.2     0.4    -      -       -      -
     905  ALA*     3.7     4.8    -      -       +      +
     915  TYR*     3.0    29.1    +      -       -      +
    1345  VAL*     3.7    35.9    -      -       +      +
    1375  ILE*     3.7    38.4    -      -       +      -
    1385  LEU*     3.4    12.7    -      -       -      +
    1415  LEU*     3.6    29.6    -      -       +      -
    1585  LEU*     4.8     1.3    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 88 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     845  LEU*     3.0    36.5    +      -       +      +
     855  LYS*     3.4    41.0    +      -       +      +
     875  PHE*     1.3    77.0    -      -       -      +
     895  ALA*     1.3    57.6    +      -       -      +
     915  TYR*     3.8     2.4    +      -       -      +
     925  GLU*     3.2    27.3    +      -       -      +
    1385  LEU*     3.8    23.6    -      -       +      -
    1425  LYS*     4.3    12.5    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 89 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     235  LEU*     5.3     0.9    -      -       -      +
     275  MET*     4.1     6.9    -      -       +      +
     805  TRP*     3.4    29.8    -      -       +      +
     855  LYS      3.1    13.2    +      -       -      +
     865  ALA      3.6     4.5    -      -       -      +
     875  PHE      3.2     0.2    -      -       -      -
     885  GLU*     1.3    75.7    -      -       -      +
     905  ALA*     1.3    57.9    -      -       -      +
     925  GLU*     3.5    11.7    +      -       -      +
     935  HIS*     3.0    26.7    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 90 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     245  TYR*     3.8    16.4    +      -       +      +
     275  MET*     3.7    22.2    -      -       +      +
     435  MET*     4.6     5.8    -      -       +      -
     865  ALA      3.2    16.2    +      -       -      +
     875  PHE*     3.4     8.9    +      -       -      +
     885  GLU      3.4     0.4    -      -       -      -
     895  ALA*     1.3    75.2    -      -       -      +
     915  TYR*     1.3    59.5    +      -       -      +
     935  HIS*     3.3     7.6    +      -       -      +
     945  GLU*     2.9    31.4    +      -       -      +
    1345  VAL*     4.1    14.1    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with TYR 91 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      11  MET*     4.2    20.7    +      -       +      +
     651  ASN*     4.7     6.1    -      -       -      +
     875  PHE      3.0    17.7    +      -       -      +
     885  GLU      4.1     3.1    -      -       -      +
     905  ALA*     1.3    73.2    -      -       -      +
     925  GLU*     1.3    64.6    +      -       -      +
     945  GLU*     3.4     2.5    +      -       +      +
     955  LYS*     3.2    49.7    +      -       -      +
    1315  GLU*     3.6    50.0    +      -       +      -
    1345  VAL*     3.8    10.2    -      -       +      +
    1355  LYS*     3.5    40.7    -      -       +      +
    1385  LEU*     3.6    22.0    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 92 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     885  GLU      3.2    17.0    +      -       -      +
     895  ALA*     3.7    10.9    -      -       -      +
     905  ALA      3.3     0.2    -      -       -      -
     915  TYR*     1.3    77.9    -      -       -      +
     935  HIS*     1.3    56.9    +      -       -      +
     955  LYS*     3.5    17.6    +      -       +      +
     965  PHE*     3.1    24.4    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with HIS 93 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     165  ARG      5.0     0.2    -      -       -      -
     195  TYR*     3.9    24.4    -      +       -      -
     205  SER*     2.8    32.0    +      -       -      -
     235  LEU*     3.5    32.3    -      -       +      +
     245  TYR*     3.8    20.2    -      +       -      -
     895  ALA      3.0    17.3    +      -       -      +
     905  ALA*     3.5     6.1    -      -       -      +
     915  TYR      3.2     0.2    -      -       -      -
     925  GLU*     1.3    75.8    -      -       -      +
     945  GLU*     1.3    59.2    +      -       -      +
     965  PHE*     3.1    21.3    +      +       -      +
     975  ILE*     2.9    44.5    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 94 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     205  SER*     5.6     0.2    +      -       -      -
     245  TYR*     2.5    27.9    +      -       -      +
     505  GLU*     4.1     2.8    -      -       -      +
     905  ALA      2.9    20.3    +      -       -      +
     915  TYR*     3.7     8.5    -      -       -      +
     925  GLU      3.4     0.4    -      -       -      -
     935  HIS*     1.3    79.3    -      -       -      +
     955  LYS*     1.3    56.5    +      -       -      +
     975  ILE*     3.6     5.3    +      -       -      +
     985  SER*     2.9    31.7    +      -       -      -
    1275  GLN*     3.0    26.4    +      -       -      +
    1305  GLU*     2.9    41.2    -      -       -      +
    1315  GLU*     3.6    17.1    +      -       +      +
    1345  VAL*     4.2    18.4    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 95 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      11  MET*     5.0    16.0    -      -       +      +
     915  TYR*     3.2    49.1    +      -       +      +
     925  GLU*     3.7    16.4    -      -       -      +
     935  HIS      3.2     0.2    -      -       -      -
     945  GLU*     1.3    74.6    -      -       -      +
     965  PHE*     1.3    60.2    +      -       -      +
     985  SER*     3.8     1.3    -      -       -      -
     995  LYS*     3.0    29.5    +      -       -      +
    1315  GLU*     4.0    24.7    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with PHE 96 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     165  ARG*     4.1    34.1    -      -       +      -
     195  TYR*     5.9     3.6    -      +       -      -
     925  GLU      3.1    14.2    +      -       -      +
     935  HIS*     3.1    26.7    +      +       -      +
     955  LYS*     1.3    74.9    -      -       -      +
     975  ILE*     1.3    77.4    +      -       +      +
     995  LYS*     3.5     8.4    +      -       +      +
    1005  SER*     3.2    23.6    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 97 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     135  GLN*     3.9     6.3    -      -       -      +
     165  ARG*     4.1    25.1    -      -       +      +
     175  GLU*     3.9    19.7    -      -       -      +
     205  SER*     3.4    27.4    -      -       -      +
     505  GLU*     5.6     1.3    -      -       -      +
     935  HIS*     2.9    32.5    +      -       +      +
     945  GLU*     4.0     5.2    -      -       -      +
     965  PHE*     1.3    85.3    -      -       +      +
     985  SER*     1.3    64.2    +      -       -      +
    1005  SER*     2.7    19.0    +      -       -      +
    1015  ILE*     3.0    19.0    +      -       +      +
    1275  GLN*     3.5    31.6    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with SER 98 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     945  GLU      2.9    15.2    +      -       -      -
     955  LYS*     3.8     5.2    -      -       -      -
     965  PHE      3.4     0.2    -      -       -      -
     975  ILE*     1.3    78.0    -      -       -      +
     995  LYS*     1.3    55.3    +      -       -      +
    1015  ILE*     3.2     9.3    +      -       -      +
    1025  TYR*     3.0    52.0    +      -       -      -
    1275  GLN*     3.0    27.4    +      -       -      +
    1315  GLU*     2.7    28.1    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 99 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     955  LYS      3.0    18.2    +      -       -      +
     965  PHE*     3.7     9.9    -      -       +      +
     975  ILE      3.3     0.2    -      -       -      -
     985  SER*     1.3    76.7    -      -       -      +
    1005  SER*     1.3    57.9    +      -       -      +
    1025  TYR*     3.2    17.3    +      -       +      +
    1035  GLU*     3.0    47.0    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with SER 100 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     135  GLN*     3.0    23.2    +      -       -      +
     165  ARG*     3.9    25.4    +      -       -      -
     965  PHE*     3.2    17.5    +      -       -      -
     975  ILE*     2.7    24.8    +      -       -      -
     995  LYS*     1.3    73.8    -      -       -      +
    1015  ILE*     1.3    62.5    +      -       -      +
    1035  GLU*     3.8    13.3    +      -       -      +
    1045  LEU*     3.3    26.2    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 101 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     135  GLN*     3.7    34.3    -      -       +      +
     175  GLU*     4.5     3.8    -      -       -      +
     575  PHE*     4.1    13.9    -      -       +      -
     975  ILE*     3.0    24.3    +      -       +      +
     985  SER*     3.4    11.2    -      -       -      +
    1005  SER*     1.3    76.2    -      -       -      +
    1025  TYR*     1.3    62.0    +      -       +      +
    1045  LEU*     3.3     5.9    +      -       -      +
    1055  ALA*     3.0    25.8    +      -       -      +
    1205  LEU*     4.4    11.0    -      -       +      +
    1235  PHE*     4.1    18.4    -      -       +      +
    1245  ILE*     3.8    38.6    -      -       +      +
    1275  GLN*     4.6     6.5    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with TYR 102 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     641  ARG*     3.5    15.4    +      -       -      -
    1121  LYS      5.4     4.0    -      -       -      -
    1131  ASP*     5.4     0.6    +      -       -      -
    1141  TYR*     3.6    50.9    -      +       +      -
    1151  SER*     2.6    29.3    +      -       -      -
     985  SER*     3.0    38.3    +      -       -      -
     995  LYS*     3.2    17.7    +      -       +      +
    1015  ILE*     1.3    82.0    -      -       +      +
    1035  GLU*     1.3    57.5    +      -       +      +
    1055  ALA*     3.3     5.8    +      -       -      +
    1065  ALA*     2.9    28.3    +      -       -      +
    1245  ILE*     4.4    10.5    -      -       +      -
    1275  GLN*     6.1     0.2    -      -       -      +
    1315  GLU*     5.0     0.5    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 103 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     165  ARG*     5.8     1.9    +      -       -      -
     995  LYS*     3.0    41.7    +      -       +      +
    1005  SER*     4.0    12.2    -      -       -      +
    1015  ILE      3.3     0.4    -      -       -      -
    1025  TYR*     1.3    74.1    -      -       +      +
    1045  LEU*     1.3    59.2    +      -       -      +
    1065  ALA*     3.5     7.6    +      -       -      +
    1075  LEU*     3.0    27.9    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 104 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      65  MET*     4.1    18.9    -      -       -      +
      95  ALA*     3.7    35.0    -      -       +      +
     105  LEU*     4.2    10.3    -      -       +      -
     135  GLN*     3.6    38.8    -      -       +      +
     165  ARG*     5.3     1.6    -      -       -      +
     575  PHE*     4.3     3.8    -      -       +      -
    1005  SER      3.3    13.7    +      -       -      +
    1015  ILE*     3.3    10.2    +      -       +      +
    1025  TYR      3.3     0.2    -      -       -      -
    1035  GLU*     1.3    76.7    -      -       -      +
    1055  ALA*     1.3    59.1    +      -       -      +
    1075  LEU*     3.3     6.7    +      -       +      +
    1085  ALA*     2.9    29.1    +      -       -      +
    1205  LEU*     3.6    27.6    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 105 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    1141  TYR*     3.7    23.6    -      -       +      -
    1015  ILE      3.0    13.6    +      -       -      +
    1025  TYR*     3.5    10.8    -      -       -      +
    1045  LEU*     1.3    76.5    -      -       -      +
    1065  ALA*     1.3    60.1    +      -       -      +
    1085  ALA*     3.6     0.6    +      -       -      -
    1095  GLU*     3.2    31.8    +      -       -      +
    1175  ARG*     3.7    20.3    -      -       -      +
    1205  LEU*     3.7    11.8    -      -       +      +
    1245  ILE*     4.4     9.2    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 106 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    1141  TYR*     3.5    17.2    +      -       +      +
    1025  TYR      2.9    16.6    +      -       -      +
    1035  GLU*     3.7     9.0    -      -       -      +
    1045  LEU      3.3     0.2    -      -       -      -
    1055  ALA*     1.3    75.4    -      -       -      +
    1075  LEU*     1.3    63.6    +      -       -      +
    1095  GLU*     3.6     4.8    +      -       -      +
    1105  GLU*     3.2    24.3    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 107 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      55  ARG*     4.4    32.5    -      -       +      +
      65  MET*     3.8    19.1    -      -       +      -
      95  ALA*     3.8    28.0    -      -       +      -
    1035  GLU      3.0    18.1    +      -       -      +
    1045  LEU*     3.3     7.4    +      -       +      +
    1065  ALA*     1.3    75.0    -      -       -      +
    1085  ALA*     1.3    63.6    +      -       -      +
    1105  GLU*     3.5    19.3    +      -       -      +
    1115  GLU*     3.2    33.3    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 108 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      65  MET*     3.6    16.6    -      -       +      +
    1045  LEU      2.9    18.0    +      -       -      +
    1055  ALA*     3.8     6.1    -      -       -      +
    1065  ALA      3.3     0.2    -      -       -      -
    1075  LEU*     1.3    78.1    -      -       -      +
    1095  GLU*     1.3    56.0    +      -       -      +
    1115  GLU      3.5     0.5    +      -       -      -
    1125  LYS*     3.0     6.6    +      -       -      -
    1135  ASP*     2.8    47.6    +      -       -      +
    1165  THR*     4.2     4.0    -      -       -      -
    1175  ARG*     3.8    22.7    -      -       +      +
    1205  LEU*     4.5     1.3    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 109 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    1141  TYR*     3.1    30.5    +      -       -      -
    1055  ALA      3.2    15.1    +      -       -      +
    1065  ALA*     3.9     5.5    -      -       -      +
    1085  ALA*     1.3    74.0    -      -       -      +
    1105  GLU*     1.3    65.2    +      -       -      +
    1125  LYS*     3.4    17.1    +      -       -      +
    1175  ARG*     3.1    35.5    +      -       +      +
    1096  GLU*     5.9     2.7    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 110 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    1065  ALA      3.2    18.3    +      -       -      +
    1075  LEU*     3.7    22.9    -      -       -      +
    1085  ALA      3.3     0.2    -      -       -      -
    1095  GLU*     1.3    79.0    -      -       -      +
    1115  GLU*     1.3    63.0    +      -       +      +
    1125  LYS*     3.2     8.0    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 111 (chain 5). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      35  SER*     2.7    33.0    +      -       -      -
      55  ARG*     3.7    26.4    -      -       -      +
      65  MET*     3.7    18.3    -      -       -      +
    1075  LEU*     3.2    24.3    +      -       +      +
    1085  ALA      4.2     2.2    -      -       -      +
    1105  GLU*     1.3    80.1    -      -       +      +
    1125  LYS*     1.3    69.9    +      -       -      +
    1135  ASP*     3.4     9.3    +      -       +      +
----------------------------------------------------------
 Back to top of page


A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il