Contacts of the helix formed by residues 82 - 111 (chain K) in PDB entry 2X17


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 82 (chain K).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30K  TYR*     3.2    10.0    +      -       -      -
     80K  TRP*     4.0     1.4    -      -       -      +
     81K  GLU*     1.3    79.6    -      -       -      +
     83K  PRO*     1.4    76.2    -      -       -      +
     84K  LEU*     3.6    11.6    +      -       -      +
     85K  LYS*     3.1    27.5    +      -       -      +
     86K  ALA*     3.0    20.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 83 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30K  TYR*     3.8     6.5    -      -       -      +
     31K  PHE*     3.7    22.0    -      -       +      -
     34K  LEU*     4.2    20.2    -      -       +      -
     36K  LEU*     4.2    13.0    -      -       +      -
     39K  PHE*     5.1     1.1    -      -       +      -
     82K  SER*     1.4    88.1    -      -       -      +
     84K  LEU*     1.3    60.3    +      -       -      +
     86K  ALA*     3.4     4.5    +      -       +      +
     87K  PHE*     3.2    21.0    +      -       -      -
    141K  LEU*     3.5    25.9    -      -       +      +
    151K  LEU*     4.4    17.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 84 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     82K  SER*     3.1    10.5    -      -       -      +
     83K  PRO*     1.3    80.5    -      -       -      +
     85K  LYS*     1.3    60.4    +      -       +      +
     87K  PHE*     3.3     3.5    +      -       -      +
     88K  GLU*     2.9    51.9    +      -       +      +
    138K  LEU*     3.8    12.1    -      -       +      +
    141K  LEU*     3.8    28.1    -      -       +      +
    142K  LYS*     3.7    42.2    -      -       +      +
    145K  LYS*     5.0    14.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 85 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80K  TRP*     3.9     5.6    -      -       +      -
     81K  GLU*     4.1    32.3    -      -       +      +
     82K  SER*     3.1    28.3    +      -       -      +
     84K  LEU*     1.3    81.6    -      -       +      +
     86K  ALA*     1.3    56.7    +      -       -      +
     88K  GLU*     3.4    26.1    +      -       +      +
     89K  ALA*     3.0    28.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 86 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27K  MET*     3.4    19.0    -      -       -      +
     30K  TYR*     3.9    23.8    -      -       +      -
     31K  PHE*     3.9    14.1    -      -       +      -
     80K  TRP*     3.7    22.4    -      -       +      +
     82K  SER      3.0    11.9    +      -       -      +
     83K  PRO      3.5     9.2    -      -       -      +
     84K  LEU      3.2     0.4    -      -       -      -
     85K  LYS*     1.3    76.4    -      -       -      +
     87K  PHE*     1.3    58.3    +      -       -      +
     89K  ALA*     3.4     1.7    +      -       -      +
     90K  ALA*     3.1    19.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 87 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31K  PHE*     3.7     9.4    -      +       -      -
     39K  PHE*     3.7    28.7    -      +       -      -
     42K  TRP*     4.5    12.8    -      +       +      -
     43K  MET*     3.6    31.4    -      -       +      -
     83K  PRO      3.2     7.9    +      -       -      +
     84K  LEU      3.3     2.2    +      -       -      +
     86K  ALA*     1.3    76.9    -      -       -      +
     88K  GLU*     1.3    60.8    +      -       -      +
     89K  ALA      3.3     0.2    -      -       -      -
     90K  ALA*     3.6     4.8    -      -       +      +
     91K  TYR*     3.0    23.7    +      -       -      +
    134K  VAL*     3.8    33.0    -      -       +      +
    137K  ILE*     3.7    39.5    -      -       +      -
    138K  LEU*     3.4    18.2    -      -       -      +
    141K  LEU*     3.7    28.3    -      -       +      -
    158K  LEU*     4.9     2.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 88 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84K  LEU*     2.9    40.8    +      -       +      +
     85K  LYS*     3.5    38.4    +      -       +      +
     86K  ALA      3.3     0.2    -      -       -      -
     87K  PHE*     1.3    76.5    -      -       -      +
     89K  ALA*     1.3    57.5    +      -       -      +
     91K  TYR*     3.6     2.3    +      -       -      +
     92K  GLU*     3.2    28.3    +      -       -      +
    138K  LEU*     3.7    23.6    -      -       +      -
    142K  LYS*     4.1    14.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 89 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23K  LEU*     5.2     1.0    -      -       -      +
     27K  MET*     4.3     6.6    -      -       +      +
     80K  TRP*     3.5    30.7    -      -       +      +
     85K  LYS      3.0    13.0    +      -       -      +
     86K  ALA      3.7     2.9    -      -       -      +
     87K  PHE      3.3     0.2    -      -       -      -
     88K  GLU*     1.3    75.8    -      -       -      +
     90K  ALA*     1.3    58.5    +      -       -      +
     92K  GLU*     3.8    10.6    +      -       -      +
     93K  HIS*     3.2    24.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 90 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24K  TYR*     4.1    14.9    +      -       +      -
     27K  MET*     3.8    21.5    -      -       +      -
     43K  MET*     4.8     6.5    -      -       +      -
     86K  ALA      3.1    16.4    +      -       -      +
     87K  PHE*     3.6     9.6    -      -       -      +
     88K  GLU      3.3     0.2    -      -       -      -
     89K  ALA*     1.3    75.9    -      -       -      +
     91K  TYR*     1.3    59.1    +      -       -      +
     92K  GLU      3.3     0.2    -      -       -      -
     93K  HIS*     3.2     7.0    +      -       -      +
     94K  GLU*     2.8    31.8    +      -       -      +
    134K  VAL*     4.1    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 91 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     87K  PHE      3.0    17.4    +      -       -      +
     88K  GLU      4.0     2.7    -      -       -      +
     90K  ALA*     1.3    73.0    -      -       -      +
     92K  GLU*     1.3    64.4    +      -       -      +
     94K  GLU*     3.4     4.5    +      -       +      +
     95K  LYS*     3.2    52.6    +      -       +      +
    131K  GLU*     3.7    39.0    +      -       +      -
    134K  VAL*     3.7     9.8    -      -       +      +
    135K  LYS*     3.5    50.5    -      -       +      +
    138K  LEU*     3.6    18.6    -      -       +      -
      1R  MET*     3.7    23.8    -      -       +      +
     65R  ASN*     4.6     4.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 92 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     88K  GLU      3.2    19.5    +      -       -      +
     89K  ALA*     3.9    10.1    -      -       -      +
     91K  TYR*     1.3    75.7    -      -       -      +
     93K  HIS*     1.3    58.4    +      -       -      +
     95K  LYS*     3.6    16.7    +      -       -      +
     96K  PHE*     3.2    22.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 93 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16K  ARG      5.3     0.2    -      -       -      -
     19K  TYR*     3.7    31.1    -      +       -      -
     20K  SER*     3.0    31.7    +      -       -      -
     23K  LEU*     3.5    25.6    -      -       +      +
     24K  TYR*     4.2    15.0    -      +       -      +
     89K  ALA      3.2    14.7    +      -       -      +
     90K  ALA*     3.2    10.0    +      -       -      +
     92K  GLU*     1.3    76.3    -      -       -      +
     94K  GLU*     1.3    58.8    +      -       -      +
     96K  PHE*     3.2    32.2    +      +       -      +
     97K  ILE*     3.0    30.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 94 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20K  SER*     5.7     0.5    +      -       -      -
     24K  TYR*     2.5    29.7    +      -       -      +
     50K  GLU*     3.8     4.3    -      -       -      +
     90K  ALA      2.8    15.2    +      -       -      +
     91K  TYR*     3.7     9.0    -      -       +      +
     92K  GLU      3.4     0.4    -      -       -      -
     93K  HIS*     1.3    80.4    -      -       -      +
     95K  LYS*     1.3    57.0    +      -       -      +
     97K  ILE*     3.6     6.4    +      -       -      +
     98K  SER*     2.8    31.5    +      -       -      -
    127K  GLN*     2.8    31.0    +      -       -      +
    130K  GLU*     3.2    39.0    -      -       -      +
    131K  GLU*     4.1    15.5    +      -       +      +
    134K  VAL*     4.0    19.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 95 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     91K  TYR*     3.2    48.4    +      -       +      +
     92K  GLU*     3.9    15.4    -      -       -      +
     93K  HIS      3.3     0.2    -      -       -      -
     94K  GLU*     1.3    73.9    -      -       -      +
     96K  PHE*     1.3    59.2    +      -       -      +
     98K  SER*     3.9     2.0    -      -       -      -
     99K  LYS*     3.1    29.6    +      -       -      +
    131K  GLU*     4.2    24.0    -      -       -      +
      1R  MET*     5.3    19.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 96 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16K  ARG*     4.2    31.9    -      -       +      -
     19K  TYR*     6.0     1.1    -      +       -      -
     92K  GLU      3.2    14.5    +      -       -      +
     93K  HIS*     3.2    39.0    +      +       -      +
     95K  LYS*     1.3    75.6    -      -       -      +
     97K  ILE*     1.3    70.0    +      -       +      +
     99K  LYS*     3.6     9.1    +      -       +      +
    100K  SER*     3.2    22.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 97 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13K  GLN*     3.7     7.9    -      -       -      +
     16K  ARG*     4.0    25.8    -      -       +      +
     17K  GLU*     3.7    19.3    -      -       -      +
     20K  SER*     3.4    25.6    -      -       -      +
     50K  GLU*     6.0     0.4    -      -       -      +
     93K  HIS*     3.0    31.5    +      -       +      +
     94K  GLU*     4.0     9.9    -      -       -      +
     96K  PHE*     1.3    85.0    -      -       +      +
     98K  SER*     1.3    60.3    +      -       -      +
    100K  SER*     2.7    19.9    +      -       -      +
    101K  ILE*     2.9    22.3    +      -       +      +
    127K  GLN*     3.7    26.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 98 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     94K  GLU      2.8    17.2    +      -       -      -
     95K  LYS*     3.9     4.9    -      -       -      -
     96K  PHE      3.4     0.2    -      -       -      -
     97K  ILE*     1.3    76.1    -      -       -      +
     99K  LYS*     1.3    57.6    +      -       -      +
    101K  ILE*     3.3     9.9    +      -       -      +
    102K  TYR*     3.0    50.5    +      -       -      -
    127K  GLN*     3.4    26.0    +      -       -      +
    131K  GLU*     2.7    29.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 99 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     95K  LYS      3.1    20.8    +      -       -      +
     96K  PHE*     3.7     9.0    -      -       +      +
     97K  ILE      3.2     0.2    -      -       -      -
     98K  SER*     1.3    77.2    -      -       -      +
    100K  SER*     1.3    58.2    +      -       -      +
    102K  TYR*     3.2    16.8    +      -       +      +
    103K  GLU*     3.1    50.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 100 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13K  GLN*     2.9    24.3    +      -       -      +
     16K  ARG*     3.8    25.9    +      -       -      -
     96K  PHE*     3.2    14.4    +      -       -      -
     97K  ILE*     2.7    24.1    +      -       -      -
     99K  LYS*     1.3    74.2    -      -       -      +
    101K  ILE*     1.3    62.3    +      -       -      +
    103K  GLU*     3.8    15.8    +      -       -      +
    104K  LEU*     3.3    26.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 101 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13K  GLN*     3.7    34.1    -      -       +      +
     17K  GLU*     4.5     4.5    -      -       -      +
     57K  PHE*     4.2     9.9    -      -       +      -
     97K  ILE*     2.9    26.0    +      -       +      +
     98K  SER*     3.4    11.9    -      -       -      +
     99K  LYS      3.2     0.2    -      -       -      -
    100K  SER*     1.3    76.3    -      -       -      +
    102K  TYR*     1.3    65.7    +      -       +      +
    104K  LEU*     3.2     7.3    +      -       +      +
    105K  ALA*     3.0    20.6    +      -       -      +
    120K  LEU*     4.5    11.5    -      -       +      +
    123K  PHE*     4.2    18.2    -      -       +      +
    124K  ILE*     3.7    38.8    -      -       +      +
    127K  GLN*     4.5     8.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 102 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98K  SER*     3.0    39.1    +      -       -      -
     99K  LYS*     3.2    18.1    +      -       +      +
    101K  ILE*     1.3    78.2    -      -       +      +
    103K  GLU*     1.3    57.9    +      -       +      +
    105K  ALA*     3.2     5.2    +      -       -      +
    106K  ALA*     2.9    28.8    +      -       -      +
    124K  ILE*     4.4    12.8    -      -       +      -
     64R  ARG*     3.1    18.2    +      -       -      -
    112R  LYS      5.4     3.1    -      -       -      -
    113R  ASP*     5.0     2.3    +      -       -      -
    114R  TYR*     3.6    49.5    -      +       +      -
    115R  SER*     2.6    30.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 103 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16K  ARG*     5.9     0.9    +      -       -      -
     99K  LYS*     3.1    37.2    +      -       +      +
    100K  SER*     4.0    13.8    -      -       -      +
    101K  ILE      3.3     0.2    -      -       -      -
    102K  TYR*     1.3    74.3    -      -       +      +
    104K  LEU*     1.3    61.2    +      -       -      +
    106K  ALA*     3.7     8.0    -      -       -      +
    107K  LEU*     3.0    28.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 104 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6K  MET*     4.4    11.4    -      -       -      +
      9K  ALA*     3.8    37.0    -      -       +      +
     10K  LEU*     4.3    14.8    -      -       +      -
     13K  GLN*     3.7    36.8    -      -       +      +
     16K  ARG*     5.6     0.9    -      -       -      +
     57K  PHE*     4.4     3.4    -      -       +      -
    100K  SER      3.3    16.9    +      -       -      +
    101K  ILE*     3.2    10.6    +      -       +      +
    103K  GLU*     1.3    76.4    -      -       -      +
    105K  ALA*     1.3    58.5    +      -       -      +
    107K  LEU*     3.3     6.6    +      -       +      +
    108K  ALA*     2.9    29.1    +      -       -      +
    120K  LEU*     3.7    27.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 105 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101K  ILE      3.0    12.7    +      -       -      +
    102K  TYR*     3.2     9.8    +      -       -      +
    104K  LEU*     1.3    77.3    -      -       -      +
    106K  ALA*     1.3    56.8    +      -       -      +
    108K  ALA*     3.3     2.5    +      -       -      +
    109K  GLU*     3.1    33.7    +      -       -      +
    117K  ARG*     3.8    22.1    -      -       -      +
    120K  LEU*     3.8    10.5    -      -       +      +
    124K  ILE*     4.3    16.6    -      -       +      -
    114R  TYR*     4.1    15.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 106 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102K  TYR      2.9    14.4    +      -       -      +
    103K  GLU*     3.7     9.2    -      -       -      +
    104K  LEU      3.3     0.2    -      -       -      -
    105K  ALA*     1.3    75.3    -      -       -      +
    107K  LEU*     1.3    58.9    +      -       -      +
    109K  GLU*     3.6     4.8    +      -       -      +
    110K  GLU*     3.2    28.8    +      -       -      +
    112R  LYS*     5.8     8.1    -      -       +      +
    114R  TYR*     3.4    20.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 107 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5K  ARG*     4.4    28.0    -      -       +      +
      6K  MET*     3.9    18.3    -      -       +      +
      9K  ALA*     3.9    28.7    -      -       +      -
    103K  GLU      3.0    19.3    +      -       -      +
    104K  LEU*     3.6     7.6    -      -       +      +
    105K  ALA      3.3     0.2    -      -       -      -
    106K  ALA*     1.3    74.8    -      -       -      +
    108K  ALA*     1.3    59.5    +      -       -      +
    110K  GLU*     3.6    17.1    +      -       -      +
    111K  GLU*     3.1    41.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 108 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      6K  MET*     3.7    17.4    -      -       +      +
    104K  LEU      2.9    16.4    +      -       -      +
    105K  ALA*     3.6     7.6    -      -       -      +
    107K  LEU*     1.3    78.5    -      -       -      +
    109K  GLU*     1.3    56.6    +      -       -      +
    112K  LYS*     3.2     5.0    +      -       -      -
    113K  ASP      2.9    34.4    +      -       -      +
    116K  THR*     4.4     4.0    -      -       -      -
    117K  ARG*     3.8    34.0    -      -       +      +
    120K  LEU*     4.4     2.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 109 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    105K  ALA      3.1    18.0    +      -       -      +
    106K  ALA*     4.0     5.5    -      -       -      +
    107K  LEU      3.3     0.2    -      -       -      -
    108K  ALA*     1.3    75.4    -      -       -      +
    110K  GLU*     1.3    63.4    +      -       -      +
    112K  LYS*     3.5    16.1    +      -       -      +
    117K  ARG*     3.0    35.7    +      -       +      +
    114R  TYR*     2.8    33.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 110 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    106K  ALA      3.2    17.6    +      -       -      +
    107K  LEU*     3.9    20.0    -      -       -      +
    109K  GLU*     1.3    78.9    -      -       -      +
    111K  GLU*     1.3    62.2    +      -       +      +
    112K  LYS*     3.2     6.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 111 (chain K). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3K  SER*     2.6    35.0    +      -       -      -
      5K  ARG*     3.6    28.2    -      -       -      +
      6K  MET*     3.4    24.4    +      -       +      +
    107K  LEU*     3.1    24.8    +      -       +      +
    108K  ALA      4.4     2.0    -      -       -      +
    110K  GLU*     1.3    78.8    -      -       +      +
    112K  LYS*     1.3    69.2    +      -       -      +
    113K  ASP*     3.3     6.7    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il