Contacts of the helix formed by residues 55 - 84 (chain B) in PDB entry 2XQL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 55 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77A  ARG*     4.7     5.5    -      -       -      +
     78A  ILE      3.0    14.0    +      -       -      +
     79A  ILE*     3.7    22.2    -      -       -      +
     80A  PRO*     3.7     2.9    -      -       -      +
     54B  ILE*     1.3    76.1    -      -       -      +
     56B  SER*     1.3    54.1    +      -       -      +
     57B  LYS*     3.9     5.9    +      -       -      +
     58B  ALA*     3.0    25.0    +      -       -      +
     59B  MET*     2.7    34.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 56 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54B  ILE      3.9     0.4    +      -       -      -
     55B  SER*     1.3    73.0    -      -       -      +
     57B  LYS*     1.3    58.6    +      -       -      +
     59B  MET*     3.1    11.6    +      -       -      +
     60B  GLY*     2.9    23.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 57 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80A  PRO*     4.1    17.0    -      -       +      -
    103A  ALA*     5.2     4.5    -      -       +      +
    104A  GLN*     3.0    38.0    -      -       +      +
     55B  SER*     4.1     7.1    -      -       -      +
     56B  SER*     1.3    77.7    -      -       -      +
     58B  ALA*     1.3    61.7    +      -       -      +
     60B  GLY*     3.2    10.7    +      -       -      +
     61B  ILE*     3.3    16.0    +      -       +      +
     64I  GLU*     4.3     1.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 58 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78A  ILE      3.2    18.6    -      -       -      +
     79A  ILE*     4.0     0.9    -      -       -      -
     80A  PRO*     3.7    21.7    -      -       +      +
     83A  LEU*     3.6    13.7    -      -       +      +
     54B  ILE*     3.7    11.4    -      -       +      -
     55B  SER*     3.0    24.3    +      -       -      +
     57B  LYS*     1.3    74.9    -      -       -      +
     59B  MET*     1.3    65.5    +      -       -      +
     61B  ILE*     3.2     6.0    +      -       -      +
     62B  MET*     3.1    20.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 59 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38B  SER*     3.5    43.3    -      -       -      +
     41B  VAL*     3.2    44.2    -      -       +      -
     42B  TYR*     3.8    11.4    -      -       +      +
     54B  ILE*     4.0    27.3    -      -       +      +
     55B  SER      2.7    15.6    +      -       -      +
     56B  SER*     3.2    14.6    -      -       -      +
     58B  ALA*     1.3    76.1    -      -       -      +
     60B  GLY*     1.3    65.7    +      -       -      +
     62B  MET*     3.3     5.2    +      -       -      +
     63B  ASN*     3.0    31.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 60 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56B  SER      2.9    13.5    +      -       -      -
     57B  LYS*     3.2     6.6    +      -       -      -
     58B  ALA      3.1     0.6    -      -       -      -
     59B  MET*     1.3    76.4    -      -       -      +
     61B  ILE*     1.3    62.6    +      -       -      +
     63B  ASN*     3.2    10.3    +      -       -      +
     64B  SER*     3.0    22.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 61 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80A  PRO*     3.4    25.1    -      -       +      -
     83A  LEU*     3.5    17.7    -      -       +      -
     87A  ILE*     5.9     1.1    -      -       +      -
    102A  ILE*     3.2    48.5    -      -       +      -
    103A  ALA*     3.4    27.8    -      -       +      +
     57B  LYS*     3.3     8.1    +      -       +      +
     58B  ALA      3.2     7.5    +      -       -      +
     59B  MET      3.2     0.2    -      -       -      -
     60B  GLY*     1.3    74.7    -      -       -      +
     62B  MET*     1.3    61.7    +      -       -      +
     64B  SER*     2.8    26.6    +      -       -      -
     65B  PHE*     2.9    14.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with MET 62 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59A  THR*     3.7    32.8    -      -       +      +
     62A  ILE*     3.4    39.3    -      -       +      -
     63A  LEU*     4.1    20.0    -      -       +      -
     83A  LEU*     4.0    17.5    -      -       +      -
     41B  VAL*     4.0    20.9    -      -       +      -
     54B  ILE*     4.2     7.4    -      -       +      -
     58B  ALA      3.1    13.6    +      -       -      +
     59B  MET*     3.3     9.8    +      -       -      +
     61B  ILE*     1.3    78.4    -      -       -      +
     63B  ASN*     1.3    58.3    +      -       -      +
     65B  PHE*     3.1    11.7    +      -       +      +
     66B  VAL*     2.9    33.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 63 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36B  SER*     3.6    10.4    -      -       -      +
     37B  TYR*     2.7    41.7    +      -       -      +
     38B  SER*     3.1    28.7    +      -       -      +
     41B  VAL*     4.8     0.6    -      -       -      +
     59B  MET*     3.0    28.1    +      -       -      +
     60B  GLY*     3.4    10.6    -      -       -      +
     61B  ILE      3.1     0.2    -      -       -      -
     62B  MET*     1.3    76.8    -      -       -      +
     64B  SER*     1.3    63.2    +      -       -      +
     66B  VAL*     3.3     6.0    +      -       -      +
     67B  ASN*     3.1    33.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 64 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60B  GLY      3.0    13.0    +      -       -      -
     61B  ILE*     2.8    13.9    +      -       -      -
     63B  ASN*     1.3    75.9    -      -       -      +
     65B  PHE*     1.3    58.0    +      -       -      +
     67B  ASN*     3.8     4.9    -      -       -      +
     68B  ASP*     2.8    31.8    +      -       -      +
    105J  GLU*     4.7    15.4    +      -       -      -
    109J  HIS*     6.0     0.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 65 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55A  LEU*     4.9     1.6    -      -       -      -
     58A  LEU*     3.7    35.0    -      -       +      -
     59A  THR*     4.2    11.4    -      -       -      -
     62A  ILE*     3.9    35.4    -      -       +      -
     87A  ILE*     5.9     0.7    -      -       +      -
     96A  LEU*     4.6     4.5    -      -       +      -
     97A  LEU*     3.9    34.8    -      -       +      -
     61B  ILE*     2.9    14.4    +      -       +      +
     62B  MET*     3.1    15.0    +      -       +      +
     64B  SER*     1.3    75.5    -      -       -      +
     66B  VAL*     1.3    78.8    +      -       +      +
     68B  ASP*     3.2     5.0    +      -       +      +
     69B  ILE*     3.1    51.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 66 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25A  PHE*     3.8    16.4    -      -       +      -
     55A  LEU*     4.2    13.4    -      -       +      +
     59A  THR*     3.7    23.6    -      -       +      +
     37B  TYR*     3.4    50.3    -      -       +      +
     41B  VAL*     5.7     2.0    -      -       +      -
     62B  MET*     2.9    25.1    +      -       +      +
     63B  ASN      3.3     4.7    +      -       -      +
     65B  PHE*     1.3    83.7    -      -       +      +
     67B  ASN*     1.3    62.3    +      -       -      +
     69B  ILE*     3.8     4.3    +      -       -      +
     70B  PHE*     3.2    21.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 67 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33A  LEU*     5.2     6.9    -      -       -      +
     36B  SER*     4.9     5.9    +      -       -      -
     37B  TYR*     3.4    32.5    +      -       -      -
     63B  ASN*     3.1    24.6    +      -       -      +
     64B  SER*     3.9     4.7    -      -       -      +
     66B  VAL*     1.3    75.7    -      -       -      +
     68B  ASP*     1.3    63.2    +      -       -      +
     70B  PHE*     3.3     7.8    +      -       -      +
     71B  GLU*     2.9    38.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 68 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     97A  LEU*     5.0     2.1    -      -       -      +
    100A  VAL*     4.3    11.1    -      -       -      +
     64B  SER      2.8    18.4    +      -       -      +
     65B  PHE*     3.2     7.9    +      -       -      +
     67B  ASN*     1.3    75.7    -      -       -      +
     69B  ILE*     1.3    61.8    +      -       +      +
     71B  GLU*     2.9    31.5    +      -       -      +
     72B  ARG*     2.9    50.2    +      -       -      +
    108J  LYS*     5.4     6.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 69 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54A  VAL*     4.7     0.4    -      -       +      -
     55A  LEU*     3.3    24.0    -      -       +      -
     58A  LEU*     3.4    26.0    -      -       +      -
     96A  LEU*     4.9     8.5    -      -       +      -
     97A  LEU*     4.8     7.0    -      -       +      -
     65B  PHE*     3.1    46.8    +      -       +      +
     66B  VAL      4.3     1.6    -      -       -      +
     68B  ASP*     1.3    80.8    -      -       -      +
     70B  PHE*     1.3    58.2    +      -       -      +
     72B  ARG*     3.7    16.8    -      -       +      +
     73B  ILE*     3.0    69.7    +      -       +      +
    102B  LEU*     5.1     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 70 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30A  VAL*     4.0    10.5    -      -       +      -
     33A  LEU*     3.4    40.8    -      -       +      -
     34A  LEU*     3.7    28.9    -      -       +      -
     39A  TYR*     4.5    14.8    -      +       -      -
     51A  LEU*     3.8    16.6    -      -       +      +
     55A  LEU*     4.0    25.1    -      -       +      -
     37B  TYR*     4.6    10.8    -      -       -      +
     66B  VAL      3.2    19.0    +      -       -      +
     67B  ASN*     3.3    12.1    -      -       -      +
     68B  ASP      3.0     0.6    +      -       -      -
     69B  ILE*     1.3    78.2    -      -       -      +
     71B  GLU*     1.3    68.0    +      -       +      +
     73B  ILE*     3.3     1.7    +      -       -      +
     74B  ALA*     2.9    39.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 71 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39A  TYR*     4.1    20.0    +      -       -      +
     67B  ASN*     2.9    24.0    +      -       +      +
     68B  ASP*     2.9    16.5    +      -       -      +
     70B  PHE*     1.3    86.2    -      -       +      +
     72B  ARG*     1.3    56.8    +      -       +      +
     74B  ALA*     4.0     0.7    -      -       -      +
     75B  GLY*     3.0    26.5    +      -       -      -
    108J  LYS*     5.3     6.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 72 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96A  LEU*     3.0    46.0    +      -       -      +
     97A  LEU*     4.0    11.1    -      -       -      +
     99A  LYS      6.1     0.2    -      -       -      +
    100A  VAL*     4.1    10.7    -      -       -      +
     68B  ASP*     2.9    47.9    +      -       -      +
     69B  ILE*     3.7    14.3    -      -       +      +
     71B  GLU*     1.3    78.5    -      -       +      +
     73B  ILE*     1.3    62.0    +      -       +      +
     75B  GLY*     3.3     2.0    +      -       -      -
     76B  GLU*     3.1    19.2    +      -       -      +
     79B  ARG*     5.5     0.2    +      -       -      -
    101B  LEU*     3.3    32.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 73 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51A  LEU*     4.3    19.1    -      -       +      -
     54A  VAL*     4.2     9.9    -      -       +      -
     69B  ILE*     3.0    41.8    +      -       +      +
     70B  PHE      3.9     2.0    -      -       -      +
     72B  ARG*     1.3    77.5    -      -       +      +
     74B  ALA*     1.3    63.2    +      -       -      +
     76B  GLU      3.5     0.5    +      -       -      -
     77B  ALA*     2.9    27.0    +      -       -      +
     94B  ILE*     4.1    26.5    -      -       +      +
     97B  ALA*     3.6    16.3    -      -       +      +
     98B  VAL*     3.9    20.9    -      -       +      -
    101B  LEU*     3.5    17.9    -      -       +      -
    102B  LEU*     4.8     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 74 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34A  LEU*     4.0    22.7    -      -       +      -
     39A  TYR*     3.3    28.8    -      -       +      +
     51A  LEU*     4.7     4.7    -      -       +      +
     70B  PHE*     2.9    26.3    +      -       +      +
     73B  ILE*     1.3    74.4    -      -       -      +
     75B  GLY*     1.3    62.0    +      -       -      +
     77B  ALA*     3.7     7.1    -      -       -      +
     78B  SER*     3.0    30.1    +      -       -      -
     89B  ILE*     4.5     0.7    -      -       -      +
     94B  ILE*     5.6     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 75 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39A  TYR*     3.8    11.4    -      -       -      -
     71B  GLU      3.0    18.6    +      -       -      -
     72B  ARG      3.7     2.0    -      -       -      -
     73B  ILE      3.2     0.2    -      -       -      -
     74B  ALA*     1.3    77.5    -      -       -      +
     76B  GLU*     1.3    56.6    +      -       -      +
     78B  SER*     3.3     5.0    +      -       -      -
     79B  ARG*     2.9    45.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 76 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  ARG      3.1    11.8    +      -       -      +
     75B  GLY*     1.3    71.3    -      -       -      +
     77B  ALA*     1.3    56.8    +      -       -      +
     79B  ARG*     2.6    40.8    +      -       -      +
     80B  LEU*     2.7    40.7    +      -       -      +
     83B  TYR*     5.6     2.4    -      -       -      -
     97B  ALA*     3.9    17.7    -      -       +      -
    100B  LEU*     3.9    25.7    -      -       +      +
    101B  LEU*     3.7    30.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 77 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34A  LEU*     6.1     0.2    -      -       +      -
     73B  ILE      2.9    19.0    +      -       -      +
     74B  ALA*     3.7     7.2    -      -       -      +
     76B  GLU*     1.3    76.9    -      -       -      +
     78B  SER*     1.3    63.5    +      -       -      +
     80B  LEU*     3.2     5.6    +      -       -      +
     81B  ALA*     3.1    22.2    +      -       -      +
     89B  ILE*     4.2    10.3    -      -       +      -
     93B  GLU*     3.9    23.2    -      -       +      +
     94B  ILE*     4.0    25.8    -      -       +      -
     97B  ALA*     3.7     7.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 78 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39A  TYR*     2.6    44.9    +      -       -      -
     74B  ALA      3.0    19.1    +      -       -      -
     75B  GLY*     3.5     4.7    -      -       -      -
     77B  ALA*     1.3    77.7    -      -       -      +
     79B  ARG*     1.3    62.7    +      -       -      +
     81B  ALA*     3.4     2.5    +      -       -      +
     82B  HIS*     3.2    36.9    +      -       -      -
     89B  ILE*     3.9    10.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 79 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  ARG      5.7     0.2    +      -       -      -
     75B  GLY*     2.9    27.7    +      -       -      +
     76B  GLU*     2.6    60.4    +      -       -      +
     78B  SER*     1.3    77.5    -      -       -      +
     80B  LEU*     1.3    61.8    +      -       -      +
     82B  HIS*     3.3     8.6    +      -       -      +
     83B  TYR*     3.1    71.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 80 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76B  GLU*     2.7    24.9    +      -       -      +
     77B  ALA*     3.3     8.1    -      -       -      +
     79B  ARG*     1.3    74.4    -      -       -      +
     81B  ALA*     1.3    61.2    +      -       -      +
     83B  TYR*     3.5    13.9    +      -       +      +
     84B  ASN*     3.1    38.9    +      -       -      +
     93B  GLU*     3.6    28.8    -      -       +      +
     96B  THR*     3.5    41.3    -      -       +      -
     97B  ALA*     3.7     9.9    -      -       -      +
    100B  LEU*     4.4    10.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 81 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77B  ALA      3.1    12.5    +      -       -      +
     78B  SER*     3.7     8.7    -      -       -      +
     79B  ARG      3.2     0.4    -      -       -      -
     80B  LEU*     1.3    74.3    -      -       -      +
     82B  HIS*     1.3    67.3    +      -       +      +
     84B  ASN*     3.3     2.8    +      -       -      -
     85B  LYS      3.2     3.6    +      -       -      -
     86B  ARG*     2.9    47.3    +      -       +      +
     88B  THR      4.2    16.4    -      -       -      +
     89B  ILE*     4.5    10.8    -      -       +      -
     93B  GLU*     4.3    11.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 82 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38A  ASN      6.0     0.2    -      -       -      -
     39A  TYR      3.8    15.3    +      -       -      -
     40A  ALA*     5.5     1.4    -      -       -      -
     78B  SER*     3.2    27.6    +      -       -      -
     79B  ARG*     3.3     8.4    +      -       -      +
     81B  ALA*     1.3    81.7    -      -       +      +
     83B  TYR*     1.3    68.1    +      -       +      +
     85B  LYS*     2.9    22.0    +      -       -      +
     86B  ARG      4.6     6.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 83 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76B  GLU*     5.6     2.7    -      -       -      -
     79B  ARG*     3.1    52.2    +      -       +      +
     80B  LEU*     3.7    18.8    -      -       +      +
     81B  ALA      3.3     0.2    -      -       -      -
     82B  HIS*     1.3    81.0    -      -       +      +
     84B  ASN*     1.3    65.9    +      -       -      +
     85B  LYS*     3.4     8.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 84 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80B  LEU*     3.1    31.9    +      -       -      +
     81B  ALA*     4.2     1.6    -      -       -      +
     82B  HIS      3.2     0.6    -      -       -      -
     83B  TYR*     1.3    83.1    +      -       -      +
     85B  LYS*     1.3    69.6    +      -       -      +
     86B  ARG*     3.0    23.5    +      -       +      +
     93B  GLU*     5.7     3.8    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il