Contacts of the helix formed by residues 55 - 84 (chain J) in PDB entry 2XQL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with SER 55 (chain J).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77I  ARG*     4.7     6.1    -      -       -      +
     78I  ILE      3.0    14.4    +      -       -      +
     79I  ILE*     3.7    22.0    -      -       -      +
     80I  PRO*     3.7     2.8    -      -       -      +
     54J  ILE*     1.3    75.4    -      -       -      +
     56J  SER*     1.3    55.3    +      -       -      +
     57J  LYS*     3.9     6.0    +      -       -      +
     58J  ALA*     3.0    25.2    +      -       -      +
     59J  MET*     2.7    34.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 56 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54J  ILE      3.9     0.4    +      -       -      -
     55J  SER*     1.3    72.9    -      -       -      +
     57J  LYS*     1.3    57.8    +      -       -      +
     59J  MET*     3.1    10.5    +      -       -      +
     60J  GLY*     2.9    24.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 57 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64G  GLU*     4.3     1.4    +      -       -      -
     80I  PRO*     4.1    17.7    -      -       +      -
    103I  ALA*     5.2     4.5    -      -       +      +
    104I  GLN*     3.0    39.1    -      -       +      +
     55J  SER*     3.2     7.1    -      -       -      +
     56J  SER*     1.3    77.9    -      -       -      +
     58J  ALA*     1.3    62.1    +      -       -      +
     60J  GLY*     3.2    10.3    +      -       -      +
     61J  ILE*     3.3    16.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 58 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78I  ILE      3.2    18.8    -      -       -      +
     79I  ILE*     4.0     1.1    -      -       -      -
     80I  PRO*     3.7    21.9    -      -       +      +
     83I  LEU*     3.6    13.5    -      -       +      +
     54J  ILE*     3.7    11.9    -      -       +      -
     55J  SER*     3.0    24.5    +      -       -      +
     57J  LYS*     1.3    75.1    -      -       -      +
     59J  MET*     1.3    64.6    +      -       -      +
     61J  ILE*     3.2     5.7    +      -       -      +
     62J  MET*     3.1    20.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 59 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38J  SER*     3.5    43.7    -      -       -      +
     41J  VAL*     3.2    43.3    -      -       +      -
     42J  TYR*     3.8    12.1    -      -       +      +
     54J  ILE*     4.0    26.7    -      -       +      +
     55J  SER      2.7    14.8    +      -       -      +
     56J  SER*     3.2    14.4    -      -       -      +
     58J  ALA*     1.3    76.0    -      -       -      +
     60J  GLY*     1.3    64.9    +      -       -      +
     62J  MET*     3.3     4.6    +      -       -      +
     63J  ASN*     3.0    32.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 60 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     56J  SER      2.9    13.3    +      -       -      -
     57J  LYS*     3.2     5.6    +      -       -      -
     58J  ALA      3.1     0.8    -      -       -      -
     59J  MET*     1.3    76.6    -      -       -      +
     61J  ILE*     1.3    62.6    +      -       -      +
     63J  ASN*     3.2     9.9    +      -       -      +
     64J  SER*     3.0    23.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 61 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80I  PRO*     3.4    24.7    -      -       +      -
     83I  LEU*     3.5    17.3    -      -       +      -
    102I  ILE*     3.2    49.1    -      -       +      -
    103I  ALA*     3.4    27.4    -      -       +      +
     57J  LYS*     3.3     7.9    +      -       +      +
     58J  ALA      3.2     7.6    +      -       -      +
     59J  MET      3.2     0.2    -      -       -      -
     60J  GLY*     1.3    74.6    -      -       -      +
     62J  MET*     1.3    60.5    +      -       -      +
     64J  SER*     2.8    26.4    +      -       -      -
     65J  PHE*     2.9    14.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with MET 62 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59I  THR*     3.7    32.8    -      -       +      +
     62I  ILE*     3.4    39.0    -      -       +      -
     63I  LEU*     4.1    20.2    -      -       +      -
     83I  LEU*     4.0    18.2    -      -       +      -
     41J  VAL*     4.0    21.1    -      -       +      -
     54J  ILE*     4.2     7.0    -      -       +      -
     58J  ALA      3.1    13.9    +      -       -      +
     59J  MET*     3.3     8.7    +      -       -      +
     61J  ILE*     1.3    77.9    -      -       -      +
     63J  ASN*     1.3    57.1    +      -       -      +
     65J  PHE*     3.1    10.9    +      -       +      +
     66J  VAL*     2.9    35.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 63 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36J  SER*     3.6    11.1    -      -       -      +
     37J  TYR*     2.7    40.8    +      -       -      +
     38J  SER*     3.1    28.3    +      -       -      +
     41J  VAL*     5.2     0.9    -      -       -      -
     59J  MET*     3.0    27.1    +      -       -      +
     60J  GLY*     3.4    11.3    -      -       -      +
     61J  ILE      3.1     0.2    -      -       -      -
     62J  MET*     1.3    76.4    -      -       -      +
     64J  SER*     1.3    63.5    +      -       -      +
     66J  VAL*     3.3     6.2    +      -       -      +
     67J  ASN*     3.1    33.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 64 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    105H  GLU*     4.7    15.2    +      -       -      -
    109H  HIS*     6.0     0.5    -      -       -      -
     60J  GLY      3.0    12.6    +      -       -      -
     61J  ILE*     2.8    13.7    +      -       -      -
     63J  ASN*     1.3    77.2    -      -       -      +
     65J  PHE*     1.3    58.5    +      -       -      +
     67J  ASN*     3.4     4.5    +      -       -      +
     68J  ASP*     2.8    31.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 65 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55I  LEU*     4.9     1.8    -      -       -      -
     58I  LEU*     3.7    35.2    -      -       +      -
     59I  THR*     4.2    11.0    -      -       -      -
     62I  ILE*     3.9    34.3    -      -       +      -
     87I  ILE*     5.9     0.7    -      -       +      -
     96I  LEU*     4.6     4.7    -      -       +      -
     97I  LEU*     3.9    34.1    -      -       +      -
     61J  ILE*     2.9    13.5    +      -       +      +
     62J  MET*     3.3    15.3    -      -       +      +
     64J  SER*     1.3    75.5    -      -       -      +
     66J  VAL*     1.3    78.7    +      -       +      +
     68J  ASP*     3.2     6.0    +      -       +      -
     69J  ILE*     3.1    50.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 66 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25I  PHE*     3.8    16.2    -      -       +      -
     55I  LEU*     4.2    14.7    -      -       +      +
     59I  THR*     3.7    23.3    -      -       +      +
     37J  TYR*     3.4    49.8    -      -       +      +
     41J  VAL*     5.7     1.8    -      -       +      -
     62J  MET*     2.9    24.7    +      -       +      +
     63J  ASN      3.3     4.0    +      -       -      +
     65J  PHE*     1.3    83.0    -      -       +      +
     67J  ASN*     1.3    63.9    +      -       -      +
     69J  ILE*     3.8     4.3    +      -       -      +
     70J  PHE*     3.2    21.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 67 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33I  LEU*     5.2     6.3    -      -       -      +
     36J  SER*     4.9     6.2    +      -       -      -
     37J  TYR*     3.4    32.4    +      -       -      -
     63J  ASN*     3.1    23.8    +      -       -      +
     64J  SER*     3.9     4.7    -      -       -      +
     66J  VAL*     1.3    74.9    -      -       -      +
     68J  ASP*     1.3    64.6    +      -       -      +
     70J  PHE*     3.3     8.4    +      -       -      +
     71J  GLU*     2.9    38.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 68 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108H  LYS*     5.4     6.7    +      -       -      -
     97I  LEU*     5.0     2.1    -      -       -      +
    100I  VAL*     4.3    10.6    -      -       -      +
     64J  SER      2.8    20.1    +      -       -      +
     65J  PHE*     3.2     7.6    +      -       -      +
     67J  ASN*     1.3    75.5    -      -       -      +
     69J  ILE*     1.3    63.0    +      -       +      +
     71J  GLU*     2.9    31.5    +      -       -      +
     72J  ARG*     2.9    50.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 69 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54I  VAL*     4.7     0.4    -      -       +      -
     55I  LEU*     3.3    23.8    -      -       +      -
     58I  LEU*     3.4    26.5    -      -       +      -
     96I  LEU*     4.9     8.5    -      -       +      -
     97I  LEU*     4.8     7.0    -      -       +      -
     65J  PHE*     3.1    45.6    +      -       +      +
     66J  VAL*     4.3     1.8    -      -       -      +
     68J  ASP*     1.3    81.0    -      -       -      +
     70J  PHE*     1.3    58.4    +      -       -      +
     72J  ARG*     3.7    15.7    -      -       +      +
     73J  ILE*     3.0    68.7    +      -       +      +
    102J  LEU*     5.1     4.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 70 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30I  VAL*     4.0    10.5    -      -       +      -
     33I  LEU*     3.4    39.3    -      -       +      -
     34I  LEU*     3.7    29.8    -      -       +      -
     39I  TYR*     4.5    14.6    -      +       -      -
     51I  LEU*     3.8    17.3    -      -       +      +
     55I  LEU*     4.0    24.7    -      -       +      -
     37J  TYR*     4.6    10.8    -      -       -      +
     66J  VAL      3.2    20.3    +      -       -      +
     67J  ASN*     3.3    11.7    -      -       -      +
     68J  ASP      3.0     0.4    +      -       -      -
     69J  ILE*     1.3    78.0    -      -       -      +
     71J  GLU*     1.3    67.0    +      -       +      +
     73J  ILE*     3.3     1.2    +      -       -      +
     74J  ALA*     2.9    39.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 71 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108H  LYS*     5.3     6.8    +      -       -      -
     39I  TYR*     4.1    19.3    +      -       -      +
     67J  ASN*     2.9    25.1    +      -       +      +
     68J  ASP*     2.9    17.4    +      -       -      +
     70J  PHE*     1.3    86.3    -      -       +      +
     72J  ARG*     1.3    56.4    +      -       +      +
     74J  ALA*     4.2     0.7    -      -       -      +
     75J  GLY*     3.0    26.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 72 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96I  LEU*     3.0    46.8    +      -       -      +
     97I  LEU*     4.0    11.8    -      -       -      +
    100I  VAL*     4.1    10.7    -      -       -      +
     68J  ASP*     2.9    46.9    +      -       -      +
     69J  ILE*     3.7    14.5    -      -       +      +
     71J  GLU*     1.3    78.3    -      -       +      +
     73J  ILE*     1.3    62.8    +      -       +      +
     75J  GLY*     3.3     2.5    +      -       -      -
     76J  GLU*     3.1    19.4    +      -       -      +
     79J  ARG*     5.5     0.2    +      -       -      -
    101J  LEU*     3.3    32.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 73 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51I  LEU*     4.3    18.4    -      -       +      -
     54I  VAL*     4.2     9.9    -      -       +      -
     69J  ILE*     3.0    41.5    +      -       +      +
     70J  PHE      3.9     1.8    -      -       -      +
     72J  ARG*     1.3    78.0    -      -       +      +
     74J  ALA*     1.3    60.0    +      -       -      +
     76J  GLU      3.5     0.7    +      -       -      -
     77J  ALA*     2.9    26.3    +      -       -      +
     94J  ILE*     4.1    26.7    -      -       +      +
     97J  ALA*     3.6    16.5    -      -       +      +
     98J  VAL*     3.9    21.3    -      -       +      -
    101J  LEU*     3.5    18.2    -      -       +      -
    102J  LEU*     4.8     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 74 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34I  LEU*     4.0    23.6    -      -       +      -
     39I  TYR*     3.3    28.8    -      -       +      +
     51I  LEU*     4.7     4.7    -      -       +      +
     70J  PHE*     2.9    24.9    +      -       +      +
     71J  GLU      4.2     0.2    -      -       -      +
     73J  ILE*     1.3    74.7    -      -       -      +
     75J  GLY*     1.3    60.8    +      -       -      +
     77J  ALA*     3.7     7.4    -      -       -      +
     78J  SER*     3.0    30.5    +      -       -      -
     89J  ILE*     4.5     0.5    -      -       -      +
     94J  ILE*     5.6     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 75 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39I  TYR*     3.8    11.0    -      -       -      -
     71J  GLU      3.0    19.0    +      -       -      -
     72J  ARG      3.3     1.8    +      -       -      -
     73J  ILE      3.2     0.2    -      -       -      -
     74J  ALA*     1.3    77.1    -      -       -      +
     76J  GLU*     1.3    56.0    +      -       -      +
     78J  SER*     3.3     4.6    +      -       -      -
     79J  ARG*     2.9    46.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 76 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72J  ARG      3.1    12.7    +      -       -      +
     75J  GLY*     1.3    71.9    -      -       -      +
     77J  ALA*     1.3    57.5    +      -       -      +
     79J  ARG*     2.6    38.9    +      -       -      +
     80J  LEU*     2.7    40.6    +      -       -      +
     83J  TYR*     5.6     2.4    -      -       -      -
     97J  ALA*     3.9    18.2    -      -       +      -
    100J  LEU*     3.9    25.4    -      -       +      +
    101J  LEU*     3.7    30.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 77 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73J  ILE      2.9    19.4    +      -       -      +
     74J  ALA*     3.7     7.0    -      -       -      +
     75J  GLY      3.3     0.2    -      -       -      -
     76J  GLU*     1.3    76.4    -      -       -      +
     78J  SER*     1.3    63.6    +      -       -      +
     80J  LEU*     3.2     5.9    +      -       -      +
     81J  ALA*     3.1    21.8    +      -       -      +
     89J  ILE*     4.2    10.5    -      -       +      -
     93J  GLU*     3.9    23.1    -      -       +      +
     94J  ILE*     4.0    26.2    -      -       +      -
     97J  ALA*     3.7     7.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 78 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39I  TYR*     2.6    45.7    +      -       -      -
     74J  ALA      3.0    19.1    +      -       -      -
     75J  GLY*     3.5     5.4    -      -       -      -
     77J  ALA*     1.3    75.7    -      -       -      +
     79J  ARG*     1.3    62.5    +      -       -      +
     81J  ALA*     3.4     2.5    +      -       -      +
     82J  HIS*     3.2    38.1    +      -       -      -
     89J  ILE*     3.9    10.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 79 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72J  ARG      5.5     0.2    +      -       -      -
     75J  GLY*     2.9    28.5    +      -       -      +
     76J  GLU*     2.6    61.8    +      -       -      +
     78J  SER*     1.3    77.0    -      -       -      +
     80J  LEU*     1.3    62.2    +      -       -      +
     82J  HIS*     3.3     7.4    +      -       -      +
     83J  TYR*     3.1    71.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 80 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76J  GLU*     2.7    26.0    +      -       -      +
     77J  ALA*     3.3     7.9    -      -       -      +
     79J  ARG*     1.3    73.6    -      -       -      +
     81J  ALA*     1.3    60.5    +      -       -      +
     83J  TYR*     3.5    14.1    +      -       +      +
     84J  ASN*     3.1    39.0    +      -       -      +
     93J  GLU*     3.6    27.4    -      -       +      +
     96J  THR*     3.5    42.2    -      -       +      -
     97J  ALA*     3.7     9.6    -      -       +      +
    100J  LEU*     4.4    10.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 81 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77J  ALA      3.1    11.7    +      -       -      +
     78J  SER*     3.7     8.7    -      -       -      +
     79J  ARG      3.2     0.4    -      -       -      -
     80J  LEU*     1.3    75.8    -      -       -      +
     82J  HIS*     1.3    66.9    +      -       +      +
     84J  ASN*     3.3     2.4    +      -       -      -
     85J  LYS      3.2     3.8    +      -       -      -
     86J  ARG*     2.9    46.6    +      -       +      +
     87J  SER      5.7     0.2    -      -       -      -
     88J  THR      4.2    16.2    -      -       -      +
     89J  ILE*     4.5    10.5    -      -       +      -
     93J  GLU*     4.4    11.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 82 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39I  TYR      3.8    15.4    +      -       -      -
     40I  ALA*     5.5     1.4    -      -       -      -
     78J  SER*     3.2    28.0    +      -       -      -
     79J  ARG*     3.3     8.6    +      -       -      +
     81J  ALA*     1.3    80.2    -      -       +      +
     83J  TYR*     1.3    68.7    +      -       +      +
     85J  LYS*     2.9    22.0    +      -       -      +
     86J  ARG      4.6     6.7    -      -       -      -
     87J  SER*     6.3     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 83 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76J  GLU*     5.6     2.7    -      -       -      -
     79J  ARG*     3.1    53.9    +      -       +      +
     80J  LEU*     3.7    18.6    -      -       +      +
     82J  HIS*     1.3    81.2    -      -       +      +
     84J  ASN*     1.3    65.4    +      -       -      +
     85J  LYS*     3.4     8.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 84 (chain J). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80J  LEU*     3.1    31.3    +      -       -      +
     81J  ALA*     3.4     2.0    -      -       -      +
     82J  HIS      3.2     0.4    -      -       -      -
     83J  TYR*     1.3    82.9    +      -       -      +
     85J  LYS*     1.3    70.5    +      -       -      +
     86J  ARG*     3.0    23.9    +      -       +      +
     93J  GLU*     5.7     3.6    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il