Contacts of the helix formed by residues 92 - 121 (chain A) in PDB entry 2ZA6
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 92 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A PHE* 4.2 3.6 - - - -
90A TRP 3.6 1.4 - - - +
91A GLY* 1.3 78.0 - - - -
93A THR* 1.3 66.6 + - - +
94A PRO* 3.1 25.6 - - - +
95A ASP* 2.9 21.9 + - - +
96A ALA* 3.0 20.3 + - - +
164A GLU* 3.8 17.0 - - - +
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Residues in contact with THR 93 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A PHE* 4.0 11.5 - - - -
45A LEU* 3.5 18.7 - - - +
48A VAL* 4.0 22.2 - - + +
92A THR* 1.3 71.3 - - - +
94A PRO* 1.3 64.1 - - - +
96A ALA* 3.2 3.1 + - - +
97A MET* 2.9 32.8 + - + +
152A ILE* 3.8 26.7 - - + -
164A GLU* 2.7 37.1 + - - +
167A PHE* 4.4 10.5 - - + -
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Residues in contact with PRO 94 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A THR* 3.1 20.6 - - - +
93A THR* 1.3 93.9 - - - +
95A ASP* 1.3 60.7 + - - +
97A MET* 4.5 0.9 - - + -
98A LYS* 3.0 39.0 + - - +
149A LEU* 3.8 17.4 - - + +
152A ILE* 3.4 25.5 - - + -
153A GLN* 4.9 7.2 - - + -
156A VAL* 4.3 21.5 - - + -
164A GLU* 4.4 2.5 - - + +
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Residues in contact with ASP 95 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A GLN* 6.3 0.4 - - - +
90A TRP 3.4 12.6 - - - +
91A GLY* 3.5 8.3 - - - -
92A THR* 2.9 38.7 + - - +
94A PRO* 1.3 78.0 - - - +
96A ALA* 1.3 58.2 + - - +
98A LYS* 3.4 14.3 + - - +
99A ALA* 3.1 28.1 + - - +
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Residues in contact with ALA 96 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A LEU* 3.7 19.6 - - + +
38A PHE* 3.5 39.0 - - + -
48A VAL* 5.4 0.2 - - + -
52A PHE* 3.8 11.1 - - + -
90A TRP* 4.1 7.0 - - - +
92A THR 3.0 5.6 + - - +
93A THR 3.6 5.2 - - - +
95A ASP* 1.3 73.5 - - - +
97A MET* 1.3 61.2 + - - +
99A ALA* 3.3 5.7 + - - +
100A ALA* 2.9 29.1 + - - +
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Residues in contact with MET 97 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A VAL* 5.8 1.1 - - + -
51A PHE* 3.8 36.3 - - + -
52A PHE* 4.3 10.4 - - + -
93A THR* 2.9 21.2 + - + +
94A PRO 4.0 3.4 - - - +
96A ALA* 1.3 75.8 - - - +
98A LYS* 1.3 57.9 + - - +
100A ALA* 3.3 4.5 + - - +
101A ILE* 2.9 31.4 + - + +
145A MET* 3.7 35.7 - - - +
148A HIS* 4.0 22.9 - - + -
149A LEU* 4.1 17.7 - - + +
152A ILE* 4.0 17.3 - - + -
167A PHE* 4.8 4.9 - - + -
172A LEU* 5.4 3.6 - - + -
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Residues in contact with LYS 98 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A PRO* 3.0 29.6 + - - +
95A ASP* 3.6 13.4 + - - +
96A ALA 3.3 0.2 - - - -
97A MET* 1.3 73.7 - - - +
99A ALA* 1.3 65.0 + - - +
101A ILE* 3.2 7.2 + - - +
102A VAL* 3.0 30.0 + - + +
149A LEU* 3.8 21.5 - - + +
153A GLN* 3.7 26.4 - - - +
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Residues in contact with ALA 99 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A LEU* 5.5 3.1 - - + -
87A GLN* 4.8 7.0 - - - +
90A TRP* 4.2 30.1 - - + -
95A ASP 3.1 14.0 + - - +
96A ALA 3.3 7.4 + - - +
98A LYS* 1.3 75.1 - - - +
100A ALA* 1.3 58.3 + - - +
102A VAL* 3.4 9.1 + - - +
103A LEU* 2.9 28.5 + - - +
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Residues in contact with ALA 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A TYR* 3.7 10.9 + - + +
34A LEU* 5.0 2.8 - - + +
52A PHE* 3.8 20.0 - - + -
96A ALA 2.9 16.6 + - - +
97A MET* 3.5 8.7 - - - +
98A LYS 3.2 0.2 - - - -
99A ALA* 1.3 77.4 - - - +
101A ILE* 1.3 57.7 + - - +
103A LEU* 3.3 5.9 + - - +
104A GLU* 2.9 32.9 + - - +
145A MET* 3.6 25.6 - - + -
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Residues in contact with ILE 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A MET 2.9 19.1 + - - +
98A LYS* 3.2 7.4 + - - +
100A ALA* 1.3 75.5 - - - +
102A VAL* 1.3 60.3 - - + +
104A GLU* 3.3 3.1 + - - +
105A LYS* 2.9 56.0 + - + +
142A ILE* 5.0 11.0 - - + +
145A MET* 3.5 48.5 - - + +
146A GLY* 3.9 6.7 - - - +
149A LEU* 3.8 26.7 - - + -
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Residues in contact with VAL 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98A LYS* 3.0 20.8 + - + +
99A ALA* 3.6 9.9 - - - +
101A ILE* 1.3 79.2 - - + +
103A LEU* 1.3 63.4 + - - +
105A LYS* 3.5 8.0 + - + +
106A SER* 3.0 23.7 + - - -
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Residues in contact with LEU 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A LEU 5.6 0.4 - - - +
26A ARG* 5.6 0.7 - - + -
27A ALA* 4.1 25.6 - - + +
30A THR* 3.8 34.3 - - + +
31A TYR* 3.7 32.8 - - + +
34A LEU* 5.5 0.7 - - + -
99A ALA 2.9 14.4 + - - +
100A ALA* 3.5 9.2 - - - +
102A VAL* 1.3 78.0 - - - +
104A GLU* 1.3 63.6 + - - +
106A SER* 2.6 29.3 + - - +
107A LEU* 3.1 12.1 + - + +
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Residues in contact with GLU 104 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A TYR* 2.6 25.1 + - - +
59A LYS* 2.7 38.2 + - - -
100A ALA 2.9 23.5 + - - +
101A ILE 3.9 2.5 - - - +
103A LEU* 1.3 70.8 - - - +
105A LYS* 1.3 60.4 + - - +
107A LEU* 3.2 7.5 + - - +
108A ASN* 2.8 30.0 + - - +
138A GLU* 2.6 30.6 - - - +
141A LEU* 3.5 12.8 - - + +
142A ILE* 3.7 21.8 - - + -
145A MET* 3.7 16.6 - - + -
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Residues in contact with LYS 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A ILE* 2.9 41.3 + - + +
102A VAL* 3.9 7.2 - - + +
104A GLU* 1.3 75.7 - - - +
106A SER* 1.3 57.4 + - - +
108A ASN* 3.7 7.1 - - - +
109A GLN* 2.8 30.3 + - - +
142A ILE* 4.3 20.0 - - + -
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Residues in contact with SER 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A LEU* 5.2 1.7 - - - +
102A VAL* 3.0 14.7 + - - -
103A LEU* 2.6 31.2 + - - +
105A LYS* 1.3 74.5 - - - +
107A LEU* 1.3 66.1 + - - +
109A GLN* 3.5 6.2 + - - +
110A ALA* 3.0 21.7 + - - +
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Residues in contact with LEU 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A LEU* 4.8 0.7 - - + +
23A LEU* 3.6 44.2 - - + +
24A TYR* 4.1 23.6 - - + -
27A ALA* 3.8 13.9 - - + -
59A LYS* 3.7 40.4 - - + +
103A LEU* 3.1 13.6 + - + +
104A GLU* 3.2 14.8 + - - +
106A SER* 1.3 82.0 + - - +
108A ASN* 1.3 61.4 + - - +
110A ALA* 3.2 7.1 + - - +
111A LEU* 2.9 33.2 + - - +
138A GLU* 4.4 5.6 - - - +
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Residues in contact with ASN 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A GLU 2.8 18.3 + - - +
105A LYS* 3.7 5.8 - - - +
107A LEU* 1.3 75.8 - - - +
109A GLN* 1.3 57.3 + - - +
111A LEU* 3.1 15.5 + - - +
112A LEU* 2.9 47.8 + - - +
135A LEU* 4.4 12.6 - - - +
138A GLU* 3.5 24.5 + - + +
139A VAL* 5.0 10.8 - - - +
142A ILE* 4.1 17.8 - - + +
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Residues in contact with GLN 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A LYS 2.8 18.4 + - - +
106A SER* 3.8 6.3 - - - +
108A ASN* 1.3 76.0 - - - +
110A ALA* 1.3 58.7 + - - +
112A LEU* 3.2 22.6 + - - +
113A ASP* 2.9 63.5 + - - +
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Residues in contact with ALA 110 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A LEU* 3.9 12.7 - - + +
23A LEU* 3.6 29.8 - - + -
106A SER 3.0 14.6 + - - +
107A LEU 3.2 9.6 + - - +
109A GLN* 1.3 77.6 - - - +
111A LEU* 1.3 56.1 + - - +
113A ASP* 3.3 9.8 + - - +
114A LEU* 3.0 28.8 + - - +
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Residues in contact with LEU 111 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A LEU* 3.7 25.4 - - + -
24A TYR* 3.4 25.1 - - + +
107A LEU 2.9 16.7 + - - +
108A ASN* 3.1 8.5 + - - +
110A ALA* 1.3 75.0 - - - +
112A LEU* 1.3 58.4 + - - +
114A LEU* 3.3 6.1 + - - +
115A HIS* 2.9 28.6 + - - +
130A LEU* 3.9 15.8 - - + +
134A PHE* 3.6 34.3 - - + +
135A LEU* 3.8 19.9 - - + +
138A GLU* 3.6 25.6 - - + -
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Residues in contact with LEU 112 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A ASN* 2.9 37.0 + - - +
109A GLN* 3.6 29.2 - - - +
111A LEU* 1.3 72.1 - - - +
113A ASP* 1.3 61.4 + - - +
115A HIS* 3.3 8.0 + - + +
116A ALA* 2.9 29.6 + - - +
135A LEU* 4.1 24.5 - - + -
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Residues in contact with ASP 113 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A GLN* 2.9 48.2 + - - +
110A ALA* 3.6 8.6 - - - +
112A LEU* 1.3 77.6 - - - +
114A LEU* 1.3 56.7 + - - +
116A ALA* 3.3 7.9 + - - +
117A LEU* 3.0 27.0 + - - +
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Residues in contact with LEU 114 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A VAL* 4.5 6.5 - - + +
16A ALA* 3.6 30.5 - - + +
17A VAL* 4.2 21.8 - - + -
20A LEU* 3.7 28.7 - - + -
66A LEU* 5.1 1.3 - - + -
110A ALA 3.0 17.4 + - - +
111A LEU* 3.7 5.4 - - - +
113A ASP* 1.3 75.1 - - - +
115A HIS* 1.3 60.6 + - - +
117A LEU* 3.2 12.3 + - + +
118A GLY* 2.9 26.3 + - - -
126A LEU* 3.8 19.7 - - + +
130A LEU* 3.8 21.3 - - + -
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Residues in contact with HIS 115 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A LEU 2.9 17.6 + - - +
112A LEU* 3.3 11.4 + - + +
114A LEU* 1.3 77.3 - - - +
116A ALA* 1.3 57.1 + - - +
118A GLY 3.3 0.2 + - - -
119A SER* 2.8 33.8 + - - -
126A LEU* 5.5 0.2 - - - -
127A CYS* 3.5 41.4 - - + +
130A LEU* 3.6 12.9 - - + +
131A GLU* 2.6 36.8 + - + +
135A LEU* 4.3 14.1 - - + +
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Residues in contact with ALA 116 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A LEU 2.9 16.7 + - - +
113A ASP* 3.6 8.5 - - - +
114A LEU 3.2 0.2 - - - -
115A HIS* 1.3 77.1 + - - +
117A LEU* 1.3 57.9 + - - +
119A SER* 3.3 7.7 + - - -
120A ALA* 3.0 28.8 + - - +
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Residues in contact with LEU 117 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12A GLU* 3.7 37.7 - - + +
13A VAL* 3.9 15.3 - - + -
16A ALA* 4.0 14.8 - - + -
19A ARG* 5.5 2.5 - - - +
113A ASP 3.0 12.5 + - - +
114A LEU* 3.2 11.0 + - + +
116A ALA* 1.3 74.2 - - - +
118A GLY* 1.3 66.0 + - - +
120A ALA* 3.2 8.1 + - + +
121A GLN* 3.0 51.2 + - + +
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Residues in contact with GLY 118 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A VAL* 4.4 4.3 - - - -
114A LEU 2.9 14.6 + - - -
115A HIS 3.7 2.2 - - - -
117A LEU* 1.3 75.8 - - - +
119A SER* 1.3 60.8 + - - +
121A GLN* 3.3 1.3 + - - -
122A ALA 3.0 4.2 + - - -
123A ASP* 2.8 34.4 + - - -
126A LEU* 3.8 20.8 - - - +
127A CYS* 3.7 10.5 - - - -
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Residues in contact with SER 119 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A HIS* 2.8 25.3 + - - -
116A ALA* 3.7 8.1 - - - -
118A GLY* 1.3 77.3 - - - +
120A ALA* 1.3 61.7 + - - +
122A ALA* 3.1 14.9 + - - +
123A ASP 5.0 0.2 - - - +
127A CYS* 3.5 11.6 - - - -
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Residues in contact with ALA 120 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A ALA 3.0 16.6 + - - +
117A LEU* 3.6 9.9 - - + +
119A SER* 1.3 76.2 - - - +
121A GLN* 1.3 61.4 + - + +
122A ALA* 3.3 1.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 121 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A ASN* 4.2 8.3 - - - +
10A SER* 3.4 28.2 - - - +
12A GLU* 3.2 35.5 + - - +
13A VAL* 4.9 1.3 - - + -
117A LEU* 3.0 35.5 + - + +
118A GLY* 4.0 4.9 - - - +
119A SER 3.2 0.2 - - - -
120A ALA* 1.3 78.5 - - + +
122A ALA* 1.3 70.5 - - - +
123A ASP* 3.3 7.3 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il