Contacts of the helix formed by residues 44 - 73 (chain X) in PDB entry 2ZG8
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 44 (chain X).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37X PHE* 2.9 31.2 + - + +
42X VAL* 3.7 8.7 - - + +
43X ALA* 1.3 78.8 - - - +
45X GLU* 1.3 65.4 + - - +
46X GLY 3.3 2.5 - - - -
47X VAL* 2.9 25.7 + - + +
48X CYS 3.0 9.7 + - - -
92X THR* 3.7 23.8 - - - +
163X GLU* 3.8 24.0 - - + +
164X TYR* 4.6 13.2 - - + +
167X GLU* 3.9 26.9 - - + +
184X EDO 4.2 9.2 - - - +
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Residues in contact with GLU 45 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37X PHE 5.1 0.7 - - - -
38X ASP* 4.2 5.3 - - - +
43X ALA 3.8 3.0 + - - -
44X LEU* 1.3 73.6 - - - +
46X GLY* 1.3 58.5 + - - +
48X CYS* 3.1 18.1 + - - +
49X ALA* 2.8 30.1 + - + +
167X GLU* 3.5 7.1 + - - +
168X ARG* 5.1 3.8 - - - +
172X LYS* 4.9 11.7 - - + -
181X PLL 3.5 24.6 - - - +
183X PLL 3.5 27.9 - - - +
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Residues in contact with GLY 46 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44X LEU 3.3 0.2 - - - -
45X GLU* 1.3 73.0 - - - +
47X VAL* 1.3 56.7 + - - +
49X ALA* 3.6 6.1 + - - +
50X PHE* 3.0 26.7 + - - +
167X GLU* 2.8 26.5 + - - -
171X LEU* 3.8 22.6 - - - +
172X LYS* 4.0 18.7 - - - +
173X HIS* 5.9 0.6 - - - -
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Residues in contact with VAL 47 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37X PHE* 3.5 27.4 - - + -
44X LEU* 2.9 24.1 + - + +
46X GLY* 1.3 75.6 - - - +
48X CYS* 1.3 64.9 + - - +
50X PHE* 3.2 3.6 + - + +
51X PHE* 3.1 50.5 + - + -
92X THR* 4.2 23.1 - - + +
96X MET* 5.7 0.9 - - + -
166X PHE* 5.5 0.4 - - + -
167X GLU* 4.2 9.2 - - + -
171X LEU* 3.6 24.0 - - + -
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Residues in contact with CYS 48 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34X GLY* 3.5 34.3 - - - +
35X PHE* 5.7 1.1 - - - -
37X PHE* 3.7 2.5 - - - +
38X ASP* 4.1 9.6 - - - +
44X LEU 3.0 9.6 + - - +
45X GLU* 3.4 31.9 - - - +
47X VAL* 1.3 77.3 - - - +
49X ALA* 1.3 57.7 + - - +
51X PHE 3.4 0.2 + - - -
52X ARG* 2.9 31.0 + - - +
181X PLL 3.6 26.7 - - - -
183X PLL 3.9 9.6 - - - -
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Residues in contact with ALA 49 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45X GLU* 2.8 22.1 + - + +
46X GLY* 3.9 6.5 - - - +
48X CYS* 1.3 73.7 - - - +
50X PHE* 1.3 64.1 + - - +
52X ARG* 3.4 2.9 + - - +
53X GLU* 2.9 26.3 + - - +
173X HIS* 4.1 25.9 + - + +
183X PLL 3.6 29.6 - - + +
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Residues in contact with PHE 50 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46X GLY 3.0 18.8 + - - +
47X VAL* 3.2 7.6 + - + +
49X ALA* 1.3 77.7 - - - +
51X PHE* 1.3 95.8 + + - +
53X GLU* 3.4 6.7 + - + +
54X LEU* 3.2 42.8 + - + +
96X MET* 3.8 23.6 - - + -
140X LEU* 5.2 3.1 - - + -
143X LYS* 4.5 13.5 - - + -
144X MET* 4.3 13.2 - - + -
147X HIS* 3.7 28.0 - + - -
171X LEU* 4.1 20.2 - - + -
173X HIS* 5.5 1.3 + - - -
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Residues in contact with PHE 51 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30X TYR* 3.4 36.3 - + + +
33X LEU* 3.7 17.9 - - + -
34X GLY* 3.7 18.6 - - - +
37X PHE* 3.9 17.0 - + - -
47X VAL* 3.1 42.7 + - + +
50X PHE* 1.3 103.7 - + - +
52X ARG* 1.3 60.2 + - - +
54X LEU* 3.1 3.6 + - + +
55X ALA* 2.9 24.3 + - - +
95X ALA* 3.9 27.1 - - + -
96X MET* 4.3 8.7 - - + -
99X ALA* 3.9 21.5 - - + -
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Residues in contact with ARG 52 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30X TYR 4.5 3.1 + - - -
31X LEU* 5.8 7.2 - - + +
34X GLY* 4.6 3.5 - - - -
35X PHE* 6.0 4.9 - - + -
48X CYS* 2.9 19.4 + - - +
49X ALA 3.8 3.7 + - - +
51X PHE* 1.3 77.0 - - - +
53X GLU* 1.3 87.0 + - - +
55X ALA* 3.2 7.6 + - + +
56X GLU* 3.0 75.9 + - - +
183X PLL 2.9 40.6 - - + +
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Residues in contact with GLU 53 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49X ALA 2.9 18.7 + - - +
50X PHE* 3.6 7.6 - - - +
52X ARG* 1.3 93.4 + - - +
54X LEU* 1.3 59.7 + - + +
56X GLU* 3.2 9.2 + - - +
57X GLU* 3.0 58.4 + - - +
60X GLU* 5.6 0.2 - - - +
173X HIS* 6.3 1.3 - - - +
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Residues in contact with LEU 54 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30X TYR* 3.7 29.2 - - + -
50X PHE* 3.2 36.0 + - + +
51X PHE* 3.1 10.6 + - + +
53X GLU* 1.3 77.4 - - + +
55X ALA* 1.3 59.4 + - - +
57X GLU* 3.1 27.9 + - + +
58X LYS* 2.9 35.9 + - - +
140X LEU* 3.7 29.6 - - + -
144X MET* 3.5 26.9 - - + -
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Residues in contact with ALA 55 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27X SER* 2.7 44.8 + - - +
30X TYR* 3.6 12.1 - - + +
31X LEU* 3.8 11.0 - - + +
51X PHE 2.9 12.6 + - - +
52X ARG* 3.4 12.6 - - - +
54X LEU* 1.3 77.2 - - - +
56X GLU* 1.3 68.3 + - - +
58X LYS 3.5 0.2 + - - -
59X ARG* 3.1 11.8 + - - +
189X EDO 4.1 8.5 - - - +
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Residues in contact with GLU 56 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31X LEU* 5.7 2.6 - - - +
52X ARG* 3.0 71.0 + - - +
53X GLU* 3.6 10.1 - - - +
55X ALA* 1.3 82.8 - - - +
57X GLU* 1.3 57.4 + - - +
59X ARG* 3.2 27.6 + - - +
60X GLU* 2.9 40.3 + - - +
189X EDO 5.4 6.3 + - - -
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Residues in contact with GLU 57 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23X TYR* 5.5 0.3 - - - -
53X GLU* 3.0 45.5 + - - +
54X LEU* 3.1 30.5 + - + +
56X GLU* 1.3 76.3 - - - +
58X LYS* 1.3 63.3 + - + +
60X GLU* 3.3 16.5 + - - +
61X GLY* 3.0 24.1 + - - -
140X LEU* 4.6 9.4 - - - +
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Residues in contact with LYS 58 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23X TYR* 3.6 45.3 - - + +
26X ALA* 3.9 5.8 - - + -
27X SER* 3.7 10.3 - - - +
30X TYR* 3.9 17.7 - - + -
54X LEU* 2.9 22.9 + - - +
57X GLU* 1.3 78.1 + - - +
59X ARG* 1.3 65.4 + - - +
61X GLY 3.2 1.0 + - - -
62X ALA* 3.0 18.9 + - - +
103X GLU* 2.7 43.5 + - - -
106X LEU* 3.6 18.6 - - + +
137X GLU* 2.8 18.4 + - - -
140X LEU* 3.9 10.7 - - - +
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Residues in contact with ARG 59 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24X LEU* 4.6 14.6 - - + -
27X SER* 3.7 13.1 + - - +
55X ALA 3.1 14.9 + - - +
56X GLU* 3.5 31.3 + - - +
58X LYS* 1.3 75.4 - - - +
60X GLU* 1.3 97.0 + - - +
62X ALA* 3.1 8.8 + - - +
63X GLU* 2.8 75.1 + - + +
189X EDO 4.7 14.2 - - - -
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Residues in contact with GLU 60 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53X GLU* 5.6 0.5 - - - +
56X GLU* 2.9 27.1 + - - +
57X GLU* 3.5 16.9 - - - +
58X LYS 3.2 0.2 - - - -
59X ARG* 1.3 105.2 + - - +
61X GLY* 1.3 54.8 + - - +
63X GLU* 3.2 7.4 + - - +
64X ARG* 2.9 39.0 + - - +
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Residues in contact with GLY 61 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23X TYR* 4.1 8.7 - - - -
57X GLU 3.0 14.1 + - - -
58X LYS 3.2 3.6 + - - -
59X ARG 3.2 0.4 - - - -
60X GLU* 1.3 76.9 - - - +
62X ALA* 1.3 60.9 + - - +
64X ARG* 3.2 4.8 + - - -
65X LEU* 3.0 21.0 + - - +
133X PHE* 3.4 32.6 - - - -
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Residues in contact with ALA 62 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20X VAL* 4.1 11.1 - - + +
23X TYR* 4.0 14.6 - - + +
24X LEU* 3.6 35.4 - - + -
58X LYS 3.0 10.6 + - - +
59X ARG 3.1 8.0 + - - +
61X GLY* 1.3 75.6 - - - +
63X GLU* 1.3 58.7 + - + +
65X LEU* 3.3 9.7 + - - +
66X LEU* 3.0 35.8 + - + +
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Residues in contact with GLU 63 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24X LEU* 6.3 0.4 - - + -
59X ARG* 2.8 61.2 + - + +
60X GLU* 3.2 9.8 + - - +
62X ALA* 1.3 78.2 - - + +
64X ARG* 1.3 56.3 + - - +
66X LEU* 3.2 14.0 + - + +
67X LYS* 2.9 29.3 + - - +
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Residues in contact with ARG 64 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60X GLU* 2.9 20.7 + - - +
61X GLY* 3.5 9.6 - - - +
63X GLU* 1.3 75.0 - - - +
65X LEU* 1.3 63.4 + - - +
67X LYS* 3.3 10.2 + - + +
68X MET* 3.0 23.0 + - - +
128X PHE* 3.8 14.7 - - + -
132X HIS* 3.2 58.6 + - + +
133X PHE* 3.9 6.6 - - + -
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Residues in contact with LEU 65 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16X VAL* 4.0 14.8 - - + +
19X LEU* 3.8 43.1 - - + -
20X VAL* 3.7 20.9 - - + +
23X TYR* 4.2 11.0 - - + -
61X GLY 3.0 21.6 + - - +
62X ALA* 3.5 7.6 - - - +
64X ARG* 1.3 77.6 - - - +
66X LEU* 1.3 55.8 + - - +
68X MET* 3.3 11.6 + - + +
69X GLN* 2.8 29.2 + - - +
128X PHE* 3.7 26.0 - - + -
129X LEU* 4.4 5.2 - - + -
133X PHE* 3.6 17.0 - - + -
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Residues in contact with LEU 66 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17X ASN* 4.9 4.7 - - - +
20X VAL* 3.9 22.9 - - + -
24X LEU* 5.6 1.8 - - + -
62X ALA* 3.0 25.6 + - + +
63X GLU* 3.2 12.5 + - + +
65X LEU* 1.3 72.7 - - - +
67X LYS* 1.3 65.3 + - - +
69X GLN* 3.3 6.8 + - + +
70X ASN* 3.1 26.8 + - - +
76X ALA* 3.7 23.1 - - + +
78X PHE* 3.7 42.6 - - + -
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Residues in contact with LYS 67 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63X GLU 2.9 15.9 + - - +
64X ARG* 3.6 9.9 - - + +
65X LEU 3.3 0.2 - - - -
66X LEU* 1.3 77.6 - - - +
68X MET* 1.3 56.9 + - - +
70X ASN* 3.3 8.4 + - - +
71X GLN* 2.9 55.0 + - + +
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Residues in contact with MET 68 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8X TYR* 4.0 11.0 - - - -
16X VAL* 3.7 37.0 - - + -
64X ARG 3.0 17.0 + - - +
65X LEU* 3.6 4.9 - - + +
67X LYS* 1.3 74.4 - - - +
69X GLN* 1.3 67.4 + - - +
71X GLN* 3.0 17.7 + - - +
72X ARG* 2.9 40.4 + - + +
124X HIS* 4.5 9.9 - - + -
125X LEU* 3.9 16.2 - - + -
128X PHE* 3.5 46.7 - - + -
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Residues in contact with GLN 69 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8X TYR* 2.6 46.4 + - - -
13X GLU* 3.1 19.5 - - - +
16X VAL* 3.8 9.7 - - + +
17X ASN* 3.0 26.5 + - - +
65X LEU 2.8 17.8 + - - +
66X LEU* 3.4 14.8 - - + +
68X MET* 1.3 79.1 - - - +
70X ASN* 1.3 60.9 + - - +
72X ARG* 3.3 1.7 + - - +
73X GLY 3.2 3.1 + - - -
74X GLY* 2.9 43.6 + - - +
75X ARG 3.8 8.7 - - - +
76X ALA* 3.9 15.7 - - + +
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Residues in contact with ASN 70 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4X ILE* 3.8 8.0 - - - +
66X LEU 3.1 12.9 + - - +
67X LYS* 3.7 8.6 - - - +
69X GLN* 1.3 77.5 - - - +
71X GLN* 1.3 66.8 + - + +
73X GLY* 3.1 12.5 + - - -
74X GLY 3.6 14.4 - - - +
75X ARG* 3.7 12.9 + - - +
76X ALA* 4.8 11.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 71 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4X ILE* 3.4 17.8 - - - +
67X LYS* 2.9 41.9 + - + +
68X MET* 3.0 26.6 + - + +
70X ASN* 1.3 75.6 - - - +
72X ARG* 1.3 63.2 + - + +
124X HIS* 5.0 9.0 - - + -
128X PHE* 5.4 2.8 - - - -
----------------------------------------------------------
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Residues in contact with ARG 72 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4X ILE* 4.4 3.8 - - - +
5X ARG* 3.5 25.8 - - - +
6X GLN 3.0 21.8 + - - +
7X ASN* 2.9 32.5 + - - +
8X TYR* 3.4 36.8 - - + +
68X MET* 2.9 35.4 + - + +
69X GLN 3.9 2.9 - - - +
70X ASN 3.1 0.2 - - - -
71X GLN* 1.3 79.7 - - + +
73X GLY* 1.3 60.9 + - - +
74X GLY 3.4 0.2 - - - -
122X ASP* 2.9 29.3 + - - -
124X HIS* 3.8 35.4 + - - +
125X LEU* 3.9 4.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 73 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2X SER* 3.7 31.8 - - - -
4X ILE* 3.9 6.3 - - - +
5X ARG* 4.0 15.4 + - - -
70X ASN 3.1 14.3 + - - -
71X GLN 3.3 1.2 + - - -
72X ARG* 1.3 79.8 - - - +
74X GLY* 1.3 64.7 + - - +
75X ARG* 3.8 14.8 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il