Contacts of the helix formed by residues 91 - 120 (chain X) in PDB entry 2ZG8
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 91 (chain X).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37X PHE* 4.3 1.6 - - - -
90X GLY* 1.3 77.0 - - - +
92X THR* 1.3 65.3 + - - +
93X PRO* 3.2 11.7 - - - +
94X ASP* 3.0 32.5 + - - +
95X ALA* 3.0 21.3 + - - +
163X GLU* 3.4 16.4 - - - +
184X EDO 3.5 12.3 - - - +
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Residues in contact with THR 92 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37X PHE* 3.8 11.5 - - - -
44X LEU* 3.7 16.6 - - - +
47X VAL* 4.2 23.4 - - + +
91X THR* 1.3 70.9 - - - +
93X PRO* 1.4 70.1 - - - +
95X ALA* 3.2 3.0 + - + +
96X MET* 2.9 31.7 + - + +
151X ILE* 4.2 17.9 - - + -
163X GLU* 2.7 29.5 + - - +
166X PHE* 4.4 17.0 - - + -
184X EDO 4.0 1.0 + - - -
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Residues in contact with PRO 93 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91X THR* 3.2 15.7 - - - +
92X THR* 1.4 93.7 - - - +
94X ASP* 1.3 62.0 + - - +
96X MET* 3.8 0.6 - - + +
97X LYS* 2.9 40.6 + - - +
148X LEU* 3.9 20.0 - - + +
151X ILE* 3.8 25.1 - - + -
152X GLN* 4.9 5.4 - - + -
155X VAL* 4.0 20.9 - - + -
163X GLU* 4.1 6.5 - - + +
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Residues in contact with ASP 94 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89X TRP 3.4 13.0 - - - +
90X GLY* 3.6 1.9 - - - -
91X THR* 3.0 37.0 + - - +
93X PRO* 1.3 78.9 - - - +
95X ALA* 1.3 58.8 + - - +
97X LYS* 3.4 15.6 + - - +
98X ALA* 3.0 28.8 + - - +
186X EDO 3.2 26.1 + - - +
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Residues in contact with ALA 95 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33X LEU* 3.7 19.1 - - + +
37X PHE* 3.5 36.3 - - + -
47X VAL* 5.5 0.2 - - + -
51X PHE* 3.9 11.1 - - + -
89X TRP* 3.8 7.6 + - - +
91X THR 3.0 6.7 + - - +
92X THR* 3.6 7.0 - - + +
94X ASP* 1.3 78.4 - - - +
96X MET* 1.3 57.7 + - - +
98X ALA* 3.2 6.3 + - - +
99X ALA* 2.9 28.4 + - - +
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Residues in contact with MET 96 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47X VAL* 5.7 0.9 - - + -
50X PHE* 3.8 38.4 - - + -
51X PHE* 4.3 10.0 - - + -
92X THR* 2.9 24.5 + - + +
93X PRO* 3.9 3.4 - - + +
95X ALA* 1.3 76.3 - - - +
97X LYS* 1.3 62.8 + - - +
99X ALA* 3.3 6.1 + - - +
100X ILE* 3.0 29.3 + - + +
144X MET* 3.7 31.6 - - - +
147X HIS* 4.1 22.2 - - + +
148X LEU* 4.0 22.0 - - + +
151X ILE* 5.0 2.9 - - + -
166X PHE* 4.7 12.8 - - + -
171X LEU* 5.3 3.6 - - + -
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Residues in contact with LYS 97 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93X PRO* 2.9 29.9 + - - +
94X ASP* 3.6 14.6 + - - +
96X MET* 1.3 76.2 - - - +
98X ALA* 1.3 62.6 + - - +
100X ILE* 3.2 6.3 + - - +
101X VAL* 3.0 29.3 + - + +
148X LEU* 3.8 25.1 - - + -
152X GLN* 3.8 22.2 + - - -
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Residues in contact with ALA 98 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33X LEU* 5.3 3.6 - - + -
86X GLN* 4.8 5.6 - - - +
89X TRP* 4.2 29.4 - - + -
94X ASP 3.0 14.0 + - - +
95X ALA* 3.5 9.2 - - - +
97X LYS* 1.3 74.3 - - - +
99X ALA* 1.3 57.5 + - - +
101X VAL* 3.3 9.3 + - - +
102X LEU* 3.0 28.8 + - - +
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Residues in contact with ALA 99 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30X TYR* 3.5 12.7 + - + +
33X LEU* 5.1 3.1 - - + +
51X PHE* 3.9 19.5 - - + -
95X ALA 2.9 13.6 + - - +
96X MET* 3.5 11.4 - - - +
97X LYS 3.2 0.2 - - - -
98X ALA* 1.3 77.9 - - - +
100X ILE* 1.3 56.3 - - - +
102X LEU* 3.3 6.0 + - - +
103X GLU* 2.9 33.4 + - - +
144X MET* 3.8 24.0 - - + -
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Residues in contact with ILE 100 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96X MET 3.0 17.1 + - - +
97X LYS* 3.6 6.5 - - - +
99X ALA* 1.3 72.3 - - - +
101X VAL* 1.3 61.7 + - + +
103X GLU* 3.2 2.8 + - - +
104X LYS* 2.8 59.4 + - + +
141X ILE* 4.8 11.2 - - + +
144X MET* 3.6 44.4 - - + +
145X GLY* 4.0 7.9 - - - +
148X LEU* 3.7 30.1 - - + -
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Residues in contact with VAL 101 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97X LYS* 3.0 19.8 + - + +
98X ALA* 3.3 10.5 + - - +
100X ILE* 1.3 76.4 - - + +
102X LEU* 1.3 64.6 + - - +
104X LYS* 3.4 9.2 + - + +
105X SER* 3.0 24.4 + - - -
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Residues in contact with LEU 102 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22X LEU 5.6 0.4 - - - +
25X ARG* 5.7 0.7 - - + -
26X ALA* 4.1 24.9 - - + +
29X THR* 3.9 33.7 - - + +
30X TYR* 3.7 33.9 - - + +
33X LEU* 5.6 0.4 - - + -
98X ALA 3.0 14.3 + - - +
99X ALA* 3.5 8.1 - - - +
101X VAL* 1.3 77.7 - - - +
103X GLU* 1.3 65.3 + - - +
105X SER* 2.7 29.6 + - - +
106X LEU* 3.0 13.5 + - + +
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Residues in contact with GLU 103 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30X TYR* 2.6 24.8 + - - +
58X LYS* 2.7 39.1 + - - -
99X ALA 2.9 23.0 + - - +
100X ILE 3.8 2.5 - - - +
102X LEU* 1.3 73.2 - - - +
104X LYS* 1.3 57.5 + - - +
106X LEU* 3.2 7.0 + - - +
107X ASN* 2.8 28.1 + - - +
137X GLU* 2.6 36.1 - - - +
140X LEU* 3.4 14.2 - - + +
141X ILE* 3.7 17.5 - - + -
144X MET* 3.7 17.7 - - + -
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Residues in contact with LYS 104 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100X ILE* 2.8 41.5 + - + +
101X VAL* 3.7 8.5 - - + +
103X GLU* 1.3 76.0 - - - +
105X SER* 1.3 56.3 + - - +
107X ASN* 3.3 7.2 + - - +
108X GLN* 2.9 30.5 + - - +
141X ILE* 4.4 19.5 - - + -
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Residues in contact with SER 105 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22X LEU* 5.9 0.2 - - - -
101X VAL* 3.0 14.7 + - - -
102X LEU* 2.7 30.0 + - - +
104X LYS* 1.3 78.5 - - - +
106X LEU* 1.3 63.0 + - - +
108X GLN* 3.5 5.4 + - - +
109X ALA* 3.0 22.2 + - - +
187X EDO 3.7 33.1 + - - -
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Residues in contact with LEU 106 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19X LEU* 4.8 1.3 - - + +
22X LEU* 3.8 40.6 - - + +
23X TYR* 4.0 25.4 - - + +
26X ALA* 3.9 13.0 - - + -
58X LYS* 3.6 42.2 - - + +
102X LEU* 3.0 18.4 + - + +
103X GLU* 3.6 13.2 - - - +
105X SER* 1.3 77.1 + - - +
107X ASN* 1.3 66.8 + - - +
109X ALA* 3.1 7.1 + - - +
110X LEU* 2.9 26.5 + - - +
137X GLU* 4.4 4.3 - - - +
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Residues in contact with ASN 107 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103X GLU 2.8 16.6 + - - +
104X LYS* 3.6 6.7 - - - +
106X LEU* 1.3 76.3 - - - +
108X GLN* 1.3 57.5 + - - +
110X LEU* 3.2 7.9 + - - +
111X LEU* 2.9 44.5 + - + +
134X LEU* 3.6 24.4 + - - +
137X GLU* 3.4 27.5 + - + +
138X VAL* 5.1 9.0 - - - +
141X ILE* 4.2 15.3 - - + +
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Residues in contact with GLN 108 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104X LYS 2.9 17.5 + - - +
105X SER* 3.9 6.7 - - - +
107X ASN* 1.3 77.6 - - - +
109X ALA* 1.3 56.8 + - - +
111X LEU* 3.3 22.6 + - - +
112X ASP* 2.9 61.5 + - - +
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Residues in contact with ALA 109 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19X LEU* 3.7 15.0 - - + +
22X LEU* 3.6 28.3 - - + -
105X SER 3.0 14.5 + - - +
106X LEU* 3.1 9.6 + - - +
108X GLN* 1.3 77.9 - - - +
110X LEU* 1.3 55.4 + - - +
112X ASP* 3.4 9.0 + - - +
113X LEU* 3.0 28.2 + - - +
187X EDO 4.6 4.9 - - - +
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Residues in contact with LEU 110 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19X LEU* 3.7 25.8 - - + -
23X TYR* 3.4 25.1 - - + +
106X LEU 2.9 15.7 + - - +
107X ASN* 3.2 6.9 + - - +
109X ALA* 1.3 73.4 - - - +
111X LEU* 1.3 61.6 + - - +
113X LEU* 3.2 6.4 + - - +
114X HIS* 2.9 29.1 + - - +
129X LEU* 4.0 14.0 - - + +
133X PHE* 3.6 36.1 - - + -
134X LEU* 3.7 18.5 - - + +
137X GLU* 3.6 25.8 - - + -
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Residues in contact with LEU 111 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107X ASN* 2.9 32.0 + - - +
108X GLN* 3.6 29.6 - - - +
110X LEU* 1.3 75.4 - - - +
112X ASP* 1.3 57.8 + - - +
114X HIS* 3.3 7.5 + - + +
115X ALA* 3.0 29.1 + - - +
134X LEU* 3.6 26.2 - - + -
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Residues in contact with ASP 112 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108X GLN* 2.9 47.2 + - - +
109X ALA* 3.6 8.7 - - - +
111X LEU* 1.3 76.7 - - - +
113X LEU* 1.3 61.3 + - - +
115X ALA* 3.3 8.1 + - - +
116X LEU* 3.0 21.8 + - - +
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Residues in contact with LEU 113 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12X VAL* 4.5 11.9 - - + +
15X ALA* 3.5 29.4 - - + +
16X VAL* 4.0 23.3 - - + +
19X LEU* 3.7 27.8 - - + -
109X ALA 3.0 17.6 + - - +
110X LEU* 3.2 5.1 + - - +
112X ASP* 1.3 74.5 - - - +
114X HIS* 1.3 59.3 + - - +
116X LEU* 3.2 13.2 + - + -
117X GLY 2.8 24.9 + - - -
125X LEU* 3.7 12.8 - - + +
129X LEU* 3.5 22.7 - - + -
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Residues in contact with HIS 114 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110X LEU 2.9 17.3 + - - +
111X LEU* 3.6 10.3 - - + +
113X LEU* 1.3 75.7 - - - +
115X ALA* 1.3 59.1 + - - +
117X GLY* 3.3 2.1 + - - +
118X SER* 2.9 33.3 + - - -
125X LEU* 4.8 1.8 - - - -
126X CYS* 3.2 45.8 - - + +
129X LEU* 3.8 10.5 - - + +
130X GLU* 4.7 0.2 - - - -
134X LEU* 4.0 17.3 - - + -
182X PLL 3.3 29.7 - - + +
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Residues in contact with ALA 115 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111X LEU 3.0 13.4 + - - +
112X ASP* 3.5 11.7 - - - +
113X LEU 3.2 0.2 - - - -
114X HIS* 1.3 78.7 + - - +
116X LEU* 1.3 56.6 + - - +
118X SER* 3.3 8.8 + - - -
119X ALA* 2.9 28.3 + - - +
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Residues in contact with LEU 116 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11X GLU* 3.7 40.8 - - + +
12X VAL* 3.9 13.5 - - + -
15X ALA* 3.9 17.5 - - + -
18X ARG* 5.8 0.7 - - - +
112X ASP 3.0 13.6 + - - +
113X LEU* 3.2 10.5 + - + +
115X ALA* 1.3 74.1 - - - +
117X GLY* 1.3 60.8 + - - +
119X ALA* 3.1 9.2 + - + +
120X GLN* 2.8 52.7 + - + +
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Residues in contact with GLY 117 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12X VAL* 4.6 3.6 - - - -
113X LEU 2.8 14.6 + - - -
114X HIS 3.6 3.6 - - - -
116X LEU* 1.3 76.5 - - - +
118X SER* 1.3 56.0 + - - +
120X GLN 3.2 1.4 + - - -
121X ALA 2.9 9.0 + - - -
122X ASP* 2.9 41.5 + - - -
125X LEU* 3.8 20.3 - - - +
126X CYS* 5.2 3.4 - - - -
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Residues in contact with SER 118 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114X HIS* 2.9 21.6 + - - -
115X ALA* 3.5 12.8 - - - -
116X LEU 3.2 0.2 - - - -
117X GLY* 1.3 75.0 - - - +
119X ALA* 1.3 62.2 + - - +
121X ALA* 3.1 14.7 + - - +
126X CYS* 5.2 3.0 - - - +
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Residues in contact with ALA 119 (chain X).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115X ALA 2.9 17.2 + - - +
116X LEU* 3.6 12.6 - - + +
118X SER* 1.3 77.4 - - - +
120X GLN* 1.3 63.3 + - + +
121X ALA* 3.7 0.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 120 (chain X).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7X ASN* 4.1 10.7 + - - +
9X SER* 3.6 31.9 - - - +
11X GLU* 3.5 32.0 + - - +
12X VAL* 4.3 3.1 - - + -
116X LEU* 2.8 33.3 + - + +
117X GLY 3.9 3.1 - - - +
119X ALA* 1.3 80.2 - - + +
121X ALA* 1.3 69.7 + - - +
122X ASP* 3.3 9.6 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il